Wall clock time and date at job start Mon Mar 30 2020 03:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31299 * 1 3 3 Si 1.86799 * 120.00340 * 2 1 4 4 H 1.48497 * 109.47202 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47037 * 299.99440 * 3 2 1 6 6 H 1.48502 * 109.46796 * 59.99601 * 3 2 1 7 7 C 1.38979 * 119.99406 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00039 * 180.02562 * 7 2 1 9 9 N 1.37332 * 120.00294 * 0.02562 * 7 2 1 10 10 C 1.36531 * 126.08551 * 180.23476 * 9 7 2 11 11 C 1.35551 * 107.52136 * 180.13482 * 10 9 7 12 12 O 1.36137 * 126.06258 * 179.90172 * 11 10 9 13 13 C 1.35947 * 118.00094 * 185.66734 * 12 11 10 14 14 C 1.38742 * 120.00557 * 69.62033 * 13 12 11 15 15 C 1.38116 * 119.99343 * 180.25465 * 14 13 12 16 16 C 1.38705 * 120.00338 * 359.51782 * 15 14 13 17 17 O 1.35981 * 119.99756 * 180.27425 * 16 15 14 18 18 C 1.38714 * 120.01026 * 0.25203 * 16 15 14 19 19 C 1.38116 * 120.00063 * 359.97438 * 18 16 15 20 20 C 1.40548 * 107.87700 * 359.63659 * 11 10 9 21 21 N 1.30930 * 108.40038 * 0.22693 * 20 11 10 22 22 H 0.97005 * 119.99390 * 0.02562 * 1 2 3 23 23 H 1.07992 * 126.24333 * 0.02562 * 10 9 7 24 24 H 1.07998 * 119.99813 * 0.04731 * 14 13 12 25 25 H 1.08003 * 119.99538 * 179.78869 * 15 14 13 26 26 H 0.96703 * 114.00122 * 89.99501 * 17 16 15 27 27 H 1.07993 * 119.99881 * 180.02562 * 18 16 15 28 28 H 1.07999 * 119.99757 * 180.02562 * 19 18 16 29 29 H 1.07994 * 125.79515 * 180.25877 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2471 1.6177 0.0000 4 1 3.7070 1.3463 0.0006 5 1 1.8885 2.3963 -1.2125 6 1 1.8883 2.3964 1.2125 7 6 2.0078 -1.2037 0.0005 8 1 3.0878 -1.2038 0.0010 9 7 1.3210 -2.3930 0.0005 10 6 1.8744 -3.6411 0.0056 11 6 0.8582 -4.5381 0.0005 12 8 0.9856 -5.8935 0.0012 13 6 -0.1433 -6.6407 -0.1229 14 6 -0.8322 -6.6622 -1.3270 15 6 -1.9820 -7.4174 -1.4512 16 6 -2.4423 -8.1620 -0.3753 17 8 -3.5713 -8.9098 -0.4995 18 6 -1.7510 -8.1444 0.8271 19 6 -0.6038 -7.3857 0.9531 20 6 -0.3505 -3.8208 0.0007 21 7 -0.0718 -2.5415 0.0007 22 1 -0.4849 0.8401 -0.0004 23 1 2.9294 -3.8717 0.0106 24 1 -0.4713 -6.0859 -2.1660 25 1 -2.5202 -7.4314 -2.3874 26 1 -3.4127 -9.8139 -0.8039 27 1 -2.1094 -8.7246 1.6645 28 1 -0.0654 -7.3724 1.8892 29 1 -1.3407 -4.2517 0.0013 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260554818.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:30 Heat of formation + Delta-G solvation = 40.367939 kcal Electronic energy + Delta-G solvation = -16629.878437 eV Core-core repulsion = 13714.282865 eV Total energy + Delta-G solvation = -2915.595572 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.21499 -39.31285 -37.85372 -35.65488 -33.44286 -30.93092 -30.34251 -29.15523 -27.45819 -24.98021 -22.75465 -22.37642 -20.64522 -19.85674 -18.35710 -18.28952 -16.28943 -15.99301 -15.52279 -15.34029 -14.97589 -14.07507 -13.95823 -13.70633 -13.33476 -13.09369 -12.64163 -12.55084 -11.93596 -11.68803 -11.40273 -11.10519 -11.07366 -10.91403 -10.52696 -10.32736 -9.37986 -8.93878 -8.90872 -8.24277 -8.15681 -6.87350 -6.60192 -4.29040 1.25782 1.43916 2.93251 3.03996 3.10104 3.49391 3.54814 3.80767 4.11806 4.14333 4.36895 4.72171 4.97248 5.03281 5.05136 5.45780 5.65307 5.77525 6.08672 6.10614 6.22944 6.49214 6.53676 6.63784 6.73479 6.79011 6.96724 7.22142 7.54358 7.66255 7.94565 8.49990 8.71185 9.29868 9.53995 10.36305 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.055624 B = 0.004687 C = 0.004504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.260793 B = 5972.242673 C = 6215.561885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.045 3.955 3 Si 0.937 3.063 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.320 4.320 8 H 0.119 0.881 9 N -0.140 5.140 10 C -0.069 4.069 11 C -0.084 4.084 12 O -0.257 6.257 13 C 0.117 3.883 14 C -0.126 4.126 15 C -0.129 4.129 16 C 0.082 3.918 17 O -0.500 6.500 18 C -0.130 4.130 19 C -0.118 4.118 20 C -0.090 4.090 21 N -0.245 5.245 22 H 0.275 0.725 23 H 0.153 0.847 24 H 0.133 0.867 25 H 0.129 0.871 26 H 0.385 0.615 27 H 0.130 0.870 28 H 0.133 0.867 29 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.312 -11.670 -1.014 11.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.172 4.172 3 Si 0.760 3.240 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.452 4.452 8 H 0.137 0.863 9 N 0.089 4.911 10 C -0.216 4.216 11 C -0.138 4.138 12 O -0.168 6.168 13 C 0.074 3.926 14 C -0.144 4.144 15 C -0.148 4.148 16 C 0.037 3.963 17 O -0.309 6.309 18 C -0.149 4.149 19 C -0.137 4.137 20 C -0.263 4.263 21 N -0.079 5.079 22 H 0.085 0.915 23 H 0.171 0.829 24 H 0.151 0.849 25 H 0.147 0.853 26 H 0.240 0.760 27 H 0.148 0.852 28 H 0.151 0.849 29 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.076 -9.928 -0.803 10.175 hybrid contribution 0.697 -0.577 -0.214 0.930 sum -1.379 -10.505 -1.018 10.644 Atomic orbital electron populations 1.70220 1.06154 1.27954 1.35615 1.25653 0.95749 1.00318 0.95454 0.85730 0.79687 0.80074 0.78480 1.18591 1.19893 1.19891 1.19963 0.91787 0.80240 1.53222 0.86303 1.44535 1.03655 1.03299 1.39623 1.20922 0.97048 0.84324 1.19298 1.18268 0.93847 0.79979 1.21683 1.84033 1.27432 1.15082 1.90232 1.18753 0.87730 0.93709 0.92445 1.21474 0.95123 0.99663 0.98170 1.21240 0.96172 0.98589 0.98756 1.18406 0.87694 0.96780 0.93375 1.84856 1.28902 1.27554 1.89632 1.21191 0.94818 1.01065 0.97780 1.21097 0.95676 0.98807 0.98110 1.23627 0.96826 0.92613 1.13264 1.78174 0.90620 1.14162 1.24897 0.91482 0.82912 0.84931 0.85323 0.76039 0.85230 0.84928 0.83171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.33 11.82 55.49 0.66 -20.68 15 2 C 0.05 1.15 5.50 -17.50 -0.10 1.06 15 3 Si 0.94 18.80 29.55 -169.99 -5.02 13.78 15 4 H -0.26 -5.01 7.11 56.52 0.40 -4.60 15 5 H -0.27 -5.44 7.11 56.52 0.40 -5.04 15 6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 15 7 C -0.32 -8.45 10.25 -14.81 -0.15 -8.60 15 8 H 0.12 2.82 7.83 -52.49 -0.41 2.41 15 9 N -0.14 -3.86 3.74 -11.43 -0.04 -3.91 15 10 C -0.07 -1.69 11.49 -16.42 -0.19 -1.88 15 11 C -0.08 -2.01 6.80 -39.67 -0.27 -2.28 15 12 O -0.26 -5.44 10.08 -4.52 -0.05 -5.49 15 13 C 0.12 2.11 5.12 -39.21 -0.20 1.91 15 14 C -0.13 -2.06 9.13 -39.44 -0.36 -2.42 15 15 C -0.13 -1.81 9.98 -39.45 -0.39 -2.20 15 16 C 0.08 1.09 6.70 -39.23 -0.26 0.83 15 17 O -0.50 -5.72 13.50 -19.68 -0.27 -5.99 15 18 C -0.13 -1.74 9.98 -39.45 -0.39 -2.13 15 19 C -0.12 -1.83 9.98 -39.44 -0.39 -2.22 15 20 C -0.09 -2.27 10.85 -17.07 -0.19 -2.45 15 21 N -0.25 -7.01 10.40 30.78 0.32 -6.69 15 22 H 0.27 6.91 8.31 -40.82 -0.34 6.57 15 23 H 0.15 3.28 8.06 -52.49 -0.42 2.85 15 24 H 0.13 2.19 8.06 -52.49 -0.42 1.77 15 25 H 0.13 1.53 8.06 -52.48 -0.42 1.11 15 26 H 0.38 2.36 9.06 45.56 0.41 2.77 15 27 H 0.13 1.41 8.06 -52.49 -0.42 0.99 15 28 H 0.13 1.89 8.06 -52.49 -0.42 1.46 15 29 H 0.15 3.50 7.57 -52.49 -0.40 3.10 15 LS Contribution 269.27 15.07 4.06 4.06 Total: -1.00 -32.07 269.27 -4.88 -36.96 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -1.64 Total: 8.34 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: -2.90 Total: -20.39 kcal Atomic # 7 Polarization: -32.20 SS G_CDS: 0.93 Total: -31.27 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: -0.31 Total: -11.48 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.78 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -32.07 -4.88 -36.96 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260554818.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.323 kcal (2) G-P(sol) polarization free energy of solvation -32.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds