Wall clock time and date at job start Mon Mar 30 2020 03:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31299 * 1 3 3 Si 1.86799 * 120.00340 * 2 1 4 4 H 1.48497 * 109.47202 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47037 * 299.99440 * 3 2 1 6 6 H 1.48502 * 109.46796 * 59.99601 * 3 2 1 7 7 C 1.38979 * 119.99406 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00039 * 180.02562 * 7 2 1 9 9 N 1.37332 * 120.00294 * 0.02562 * 7 2 1 10 10 C 1.36531 * 126.08551 * 180.23476 * 9 7 2 11 11 C 1.35551 * 107.52136 * 180.13482 * 10 9 7 12 12 O 1.36137 * 126.06258 * 179.90172 * 11 10 9 13 13 C 1.35947 * 118.00094 * 185.66734 * 12 11 10 14 14 C 1.38742 * 120.00557 * 69.62033 * 13 12 11 15 15 C 1.38116 * 119.99343 * 180.25465 * 14 13 12 16 16 C 1.38705 * 120.00338 * 359.51782 * 15 14 13 17 17 O 1.35981 * 119.99756 * 180.27425 * 16 15 14 18 18 C 1.38714 * 120.01026 * 0.25203 * 16 15 14 19 19 C 1.38116 * 120.00063 * 359.97438 * 18 16 15 20 20 C 1.40548 * 107.87700 * 359.63659 * 11 10 9 21 21 N 1.30930 * 108.40038 * 0.22693 * 20 11 10 22 22 H 0.97005 * 119.99390 * 0.02562 * 1 2 3 23 23 H 1.07992 * 126.24333 * 0.02562 * 10 9 7 24 24 H 1.07998 * 119.99813 * 0.04731 * 14 13 12 25 25 H 1.08003 * 119.99538 * 179.78869 * 15 14 13 26 26 H 0.96703 * 114.00122 * 89.99501 * 17 16 15 27 27 H 1.07993 * 119.99881 * 180.02562 * 18 16 15 28 28 H 1.07999 * 119.99757 * 180.02562 * 19 18 16 29 29 H 1.07994 * 125.79515 * 180.25877 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2471 1.6177 0.0000 4 1 3.7070 1.3463 0.0006 5 1 1.8885 2.3963 -1.2125 6 1 1.8883 2.3964 1.2125 7 6 2.0078 -1.2037 0.0005 8 1 3.0878 -1.2038 0.0010 9 7 1.3210 -2.3930 0.0005 10 6 1.8744 -3.6411 0.0056 11 6 0.8582 -4.5381 0.0005 12 8 0.9856 -5.8935 0.0012 13 6 -0.1433 -6.6407 -0.1229 14 6 -0.8322 -6.6622 -1.3270 15 6 -1.9820 -7.4174 -1.4512 16 6 -2.4423 -8.1620 -0.3753 17 8 -3.5713 -8.9098 -0.4995 18 6 -1.7510 -8.1444 0.8271 19 6 -0.6038 -7.3857 0.9531 20 6 -0.3505 -3.8208 0.0007 21 7 -0.0718 -2.5415 0.0007 22 1 -0.4849 0.8401 -0.0004 23 1 2.9294 -3.8717 0.0106 24 1 -0.4713 -6.0859 -2.1660 25 1 -2.5202 -7.4314 -2.3874 26 1 -3.4127 -9.8139 -0.8039 27 1 -2.1094 -8.7246 1.6645 28 1 -0.0654 -7.3724 1.8892 29 1 -1.3407 -4.2517 0.0013 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260554818.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:29 Heat of formation + Delta-G solvation = 18.157814 kcal Electronic energy + Delta-G solvation = -16630.841540 eV Core-core repulsion = 13714.282865 eV Total energy + Delta-G solvation = -2916.558676 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.87498 -40.76756 -39.23258 -36.85587 -35.35522 -32.36119 -32.05635 -30.66416 -29.07433 -26.91706 -23.93310 -23.72218 -22.55729 -21.56322 -20.06016 -19.36858 -18.02114 -17.38752 -17.26778 -16.56179 -16.38962 -15.66288 -15.47850 -15.28783 -14.98853 -14.46396 -14.11528 -13.86474 -13.57216 -13.10685 -12.93015 -12.84364 -12.75494 -12.45991 -12.03169 -11.44392 -11.20664 -10.88400 -10.21610 -10.05735 -9.47725 -8.73771 -8.50768 -6.29194 0.05190 0.28812 1.25283 1.40435 1.59680 1.71448 2.04381 2.16602 2.32670 2.74981 2.94931 3.04544 3.28615 3.91239 3.94324 4.19963 4.30549 4.50454 4.53324 4.70944 4.85627 4.97546 5.03104 5.12485 5.30430 5.35566 5.47791 5.55463 5.80825 6.03564 6.62628 6.86388 6.98624 7.36567 7.55467 8.49079 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.055624 B = 0.004687 C = 0.004504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.260793 B = 5972.242673 C = 6215.561885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C -0.005 4.005 3 Si 1.021 2.979 4 H -0.243 1.243 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.351 4.351 8 H 0.140 0.860 9 N -0.161 5.161 10 C -0.081 4.081 11 C -0.071 4.071 12 O -0.263 6.263 13 C 0.073 3.927 14 C -0.133 4.133 15 C -0.131 4.131 16 C 0.099 3.901 17 O -0.503 6.503 18 C -0.126 4.126 19 C -0.118 4.118 20 C -0.096 4.096 21 N -0.293 5.293 22 H 0.278 0.722 23 H 0.181 0.819 24 H 0.121 0.879 25 H 0.150 0.850 26 H 0.412 0.588 27 H 0.160 0.840 28 H 0.141 0.859 29 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.316 -12.669 -0.844 12.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.217 4.217 3 Si 0.840 3.160 4 H -0.166 1.166 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.482 4.482 8 H 0.157 0.843 9 N 0.067 4.933 10 C -0.228 4.228 11 C -0.125 4.125 12 O -0.174 6.174 13 C 0.030 3.970 14 C -0.152 4.152 15 C -0.149 4.149 16 C 0.055 3.945 17 O -0.317 6.317 18 C -0.144 4.144 19 C -0.137 4.137 20 C -0.269 4.269 21 N -0.127 5.127 22 H 0.088 0.912 23 H 0.198 0.802 24 H 0.139 0.861 25 H 0.168 0.832 26 H 0.272 0.728 27 H 0.178 0.822 28 H 0.159 0.841 29 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.077 -10.995 -0.642 11.208 hybrid contribution 0.554 -0.537 -0.279 0.820 sum -1.524 -11.532 -0.921 11.669 Atomic orbital electron populations 1.70375 1.08315 1.29244 1.37057 1.26874 0.96568 1.04190 0.94046 0.84508 0.78970 0.74225 0.78346 1.16555 1.19562 1.19585 1.20684 0.93014 0.80629 1.53908 0.84280 1.44813 1.03478 1.04419 1.40600 1.21507 0.98604 0.83876 1.18821 1.18351 0.93003 0.81592 1.19589 1.84055 1.29526 1.13534 1.90325 1.19091 0.88504 0.95208 0.94177 1.21438 0.96065 1.00316 0.97405 1.21446 0.95357 0.98001 1.00122 1.18471 0.87279 0.95910 0.92889 1.84793 1.27790 1.29361 1.89739 1.21483 0.93696 1.00423 0.98783 1.21247 0.96360 0.98389 0.97689 1.23813 0.97904 0.92132 1.13053 1.78068 0.91952 1.15865 1.26797 0.91179 0.80216 0.86095 0.83215 0.72820 0.82211 0.84147 0.82076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.61 11.82 21.66 0.26 -46.36 15 2 C 0.00 -0.26 5.50 84.95 0.47 0.21 15 3 Si 1.02 38.32 29.55 68.60 2.03 40.35 15 4 H -0.24 -8.25 7.11 99.48 0.71 -7.55 15 5 H -0.27 -9.93 7.11 99.48 0.71 -9.22 15 6 H -0.27 -9.95 7.11 99.48 0.71 -9.24 15 7 C -0.35 -18.77 10.25 84.01 0.86 -17.91 15 8 H 0.14 6.54 7.83 -2.91 -0.02 6.52 15 9 N -0.16 -9.10 3.74 -190.08 -0.71 -9.81 15 10 C -0.08 -4.06 11.49 83.34 0.96 -3.10 15 11 C -0.07 -3.47 6.80 22.21 0.15 -3.32 15 12 O -0.26 -11.26 10.08 -39.08 -0.39 -11.65 15 13 C 0.07 2.61 5.12 22.51 0.12 2.73 15 14 C -0.13 -4.34 9.13 22.36 0.20 -4.14 15 15 C -0.13 -3.42 9.98 22.35 0.22 -3.20 15 16 C 0.10 2.35 6.70 22.50 0.15 2.50 15 17 O -0.50 -9.51 13.50 -93.33 -1.26 -10.77 15 18 C -0.13 -2.99 9.98 22.35 0.22 -2.77 15 19 C -0.12 -3.49 9.98 22.36 0.22 -3.27 15 20 C -0.10 -4.97 10.85 85.39 0.93 -4.04 15 21 N -0.29 -17.30 10.40 -56.53 -0.59 -17.89 15 22 H 0.28 14.40 8.31 -92.70 -0.77 13.63 15 23 H 0.18 7.67 8.06 -2.91 -0.02 7.65 15 24 H 0.12 4.11 8.06 -2.91 -0.02 4.09 15 25 H 0.15 3.21 8.06 -2.91 -0.02 3.19 15 26 H 0.41 3.23 9.06 -74.06 -0.67 2.56 15 27 H 0.16 2.83 8.06 -2.91 -0.02 2.81 15 28 H 0.14 3.82 8.06 -2.91 -0.02 3.80 15 29 H 0.16 7.72 7.57 -2.91 -0.02 7.69 15 Total: -1.00 -70.86 269.27 4.35 -66.51 By element: Atomic # 1 Polarization: 25.41 SS G_CDS: 0.52 Total: 25.92 kcal Atomic # 6 Polarization: -40.81 SS G_CDS: 4.50 Total: -36.31 kcal Atomic # 7 Polarization: -73.01 SS G_CDS: -1.04 Total: -74.05 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -1.65 Total: -22.43 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 2.03 Total: 40.35 kcal Total: -70.86 4.35 -66.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260554818.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.671 kcal (2) G-P(sol) polarization free energy of solvation -70.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds