Wall clock time and date at job start Mon Mar 30 2020 04:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35480 * 116.99843 * 2 1 4 4 C 1.40719 * 120.35509 * 180.02562 * 3 2 1 5 5 C 1.35001 * 119.91888 * 179.91711 * 4 3 2 6 6 N 1.36400 * 121.01421 * 0.09302 * 5 4 3 7 7 C 1.36932 * 120.82715 * 359.92716 * 6 5 4 8 8 C 1.38404 * 120.35687 * 359.97438 * 3 2 1 9 9 N 1.33688 * 121.74623 * 180.02562 * 7 6 5 10 10 C 1.31322 * 122.64492 * 359.62266 * 9 7 6 11 11 C 1.41196 * 119.63875 * 0.65362 * 10 9 7 12 12 C 1.40503 * 121.13146 * 179.69043 * 11 10 9 13 13 H 1.08006 * 120.00440 * 150.77149 * 12 11 10 14 14 C 1.39818 * 119.99891 * 330.49756 * 12 11 10 15 15 N 1.31027 * 120.00062 * 161.66721 * 14 12 11 16 16 Si 1.86801 * 120.00238 * 341.66723 * 14 12 11 17 17 H 1.48505 * 109.46944 * 95.36688 * 16 14 12 18 18 H 1.48494 * 109.47463 * 215.36637 * 16 14 12 19 19 H 1.48500 * 109.46931 * 335.36892 * 16 14 12 20 20 C 1.35234 * 119.10639 * 179.97438 * 6 5 4 21 21 O 1.21784 * 120.92098 * 0.02761 * 20 6 5 22 22 H 1.09004 * 109.47247 * 299.99949 * 1 2 3 23 23 H 1.09003 * 109.47632 * 60.00087 * 1 2 3 24 24 H 1.09001 * 109.47309 * 180.02562 * 1 2 3 25 25 H 1.08000 * 120.03749 * 359.97156 * 4 3 2 26 26 H 1.08001 * 119.49302 * 180.02562 * 5 4 3 27 27 H 1.08001 * 120.26572 * 0.04868 * 8 3 2 28 28 H 1.08001 * 120.18535 * 180.34624 * 10 9 7 29 29 H 0.97002 * 120.00277 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2071 0.0000 4 6 3.4488 1.2895 -0.0005 5 6 4.0525 2.4971 -0.0022 6 7 3.3211 3.6484 -0.0015 7 6 1.9523 3.6103 -0.0006 8 6 1.2974 2.3726 -0.0005 9 7 1.2175 4.7271 -0.0004 10 6 1.7519 5.9267 0.0062 11 6 3.1570 6.0652 -0.0006 12 6 3.7620 7.3333 -0.0003 13 1 4.7335 7.4681 0.4518 14 6 3.1088 8.4195 -0.5905 15 7 3.4717 9.6428 -0.2927 16 14 1.7187 8.1268 -1.8036 17 1 0.4175 8.1959 -1.0913 18 1 1.7589 9.1667 -2.8629 19 1 1.8746 6.7852 -2.4207 20 6 3.9658 4.8372 -0.0028 21 8 5.1825 4.8893 -0.0050 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 4.0432 0.3878 -0.0005 26 1 5.1311 2.5523 -0.0031 27 1 0.2183 2.3277 -0.0002 28 1 1.1201 6.8026 0.0117 29 1 3.0183 10.3964 -0.7019 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260568056.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:29 Heat of formation + Delta-G solvation = -4.295234 kcal Electronic energy + Delta-G solvation = -17263.757776 eV Core-core repulsion = 14346.225463 eV Total energy + Delta-G solvation = -2917.532313 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.13394 -38.98798 -36.74824 -36.05547 -34.02708 -32.11396 -31.03172 -29.26555 -27.62862 -25.33619 -23.77248 -22.38720 -21.99769 -19.25062 -17.94647 -17.34062 -16.92488 -16.05691 -15.69417 -15.48844 -15.02841 -14.80421 -14.50505 -13.56204 -13.33008 -12.84877 -12.71546 -12.38700 -12.21372 -11.94128 -11.70854 -11.38236 -11.25410 -10.96619 -10.83380 -10.24671 -9.77008 -9.18759 -8.89456 -8.72669 -8.52183 -7.45982 -7.06560 -4.42853 1.19497 1.49663 2.86350 2.93579 3.07513 3.19079 3.36871 3.38759 3.48040 3.70090 4.26092 5.04925 5.08596 5.12832 5.27343 5.31222 5.40006 5.50967 5.63287 5.71502 6.03947 6.27887 6.41679 6.50695 6.59742 6.84433 7.01976 7.31968 7.58149 7.70956 7.76645 7.99265 8.16367 8.81223 9.23043 9.50305 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.035946 B = 0.007270 C = 0.006273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.769205 B = 3850.477524 C = 4462.459303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.315 6.315 3 C 0.094 3.906 4 C -0.177 4.177 5 C 0.107 3.893 6 N -0.439 5.439 7 C 0.201 3.799 8 C -0.170 4.170 9 N -0.455 5.455 10 C -0.090 4.090 11 C -0.054 4.054 12 C -0.329 4.329 13 H 0.108 0.892 14 C 0.069 3.931 15 N -0.761 5.761 16 Si 0.925 3.075 17 H -0.258 1.258 18 H -0.283 1.283 19 H -0.244 1.244 20 C 0.497 3.503 21 O -0.546 6.546 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.094 0.906 25 H 0.143 0.857 26 H 0.167 0.833 27 H 0.141 0.859 28 H 0.140 0.860 29 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.202 -10.493 -1.149 11.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.044 3.956 4 C -0.200 4.200 5 C -0.013 4.013 6 N -0.151 5.151 7 C -0.037 4.037 8 C -0.191 4.191 9 N -0.172 5.172 10 C -0.240 4.240 11 C -0.064 4.064 12 C -0.357 4.357 13 H 0.126 0.874 14 C -0.155 4.155 15 N -0.382 5.382 16 Si 0.749 3.251 17 H -0.184 1.184 18 H -0.210 1.210 19 H -0.167 1.167 20 C 0.297 3.703 21 O -0.427 6.427 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.112 0.888 25 H 0.161 0.839 26 H 0.184 0.816 27 H 0.158 0.842 28 H 0.157 0.843 29 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.246 -10.150 -1.145 11.483 hybrid contribution 0.038 0.364 -0.495 0.615 sum -5.209 -9.786 -1.640 11.206 Atomic orbital electron populations 1.22997 0.78822 1.03218 1.01659 1.85868 1.20996 1.26985 1.88926 1.18848 0.91776 0.83829 1.01142 1.19822 0.91764 0.96985 1.11392 1.21676 0.98623 0.84746 0.96283 1.43351 1.07740 1.07251 1.56777 1.18527 0.77621 0.93781 1.13778 1.20596 0.99603 0.88521 1.10387 1.67419 1.36524 0.97507 1.15776 1.21877 0.91388 0.93124 1.17615 1.20506 0.92886 0.92145 1.00855 1.19453 1.04580 0.89141 1.22522 0.87445 1.26463 0.97876 0.94015 0.97163 1.69717 1.35589 0.99977 1.32911 0.86011 0.79510 0.80105 0.79457 1.18386 1.20973 1.16708 1.19250 0.88198 0.83043 0.79830 1.90732 1.12986 1.86075 1.52875 0.92649 0.92686 0.88759 0.83936 0.81568 0.84175 0.84283 0.89038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.82 101.05 0.99 1.29 15 2 O -0.32 -4.54 10.49 -18.13 -0.19 -4.73 15 3 C 0.09 1.56 6.74 -38.58 -0.26 1.30 15 4 C -0.18 -2.82 9.96 -39.80 -0.40 -3.22 15 5 C 0.11 1.97 10.06 -16.67 -0.17 1.80 15 6 N -0.44 -9.85 2.78 -63.13 -0.18 -10.02 15 7 C 0.20 4.47 7.33 -155.55 -1.14 3.33 15 8 C -0.17 -3.12 8.96 -38.85 -0.35 -3.47 15 9 N -0.46 -10.82 10.19 -11.77 -0.12 -10.94 15 10 C -0.09 -2.20 8.46 -16.65 -0.14 -2.34 15 11 C -0.05 -1.40 5.28 -104.36 -0.55 -1.95 15 12 C -0.33 -8.63 9.31 -38.14 -0.36 -8.99 15 13 H 0.11 2.99 8.02 -52.48 -0.42 2.57 15 14 C 0.07 1.68 5.42 -17.30 -0.09 1.59 15 15 N -0.76 -18.38 13.94 55.54 0.77 -17.61 15 16 Si 0.92 19.65 24.54 -169.99 -4.17 15.48 15 17 H -0.26 -5.28 6.71 56.52 0.38 -4.90 15 18 H -0.28 -5.65 7.11 56.52 0.40 -5.25 15 19 H -0.24 -5.55 6.86 56.52 0.39 -5.16 15 20 C 0.50 12.57 7.58 -12.49 -0.09 12.48 15 21 O -0.55 -14.46 16.27 5.11 0.08 -14.38 15 22 H 0.05 0.56 7.67 -51.93 -0.40 0.16 15 23 H 0.05 0.56 7.67 -51.93 -0.40 0.16 15 24 H 0.09 0.72 8.14 -51.93 -0.42 0.30 15 25 H 0.14 1.81 8.06 -52.49 -0.42 1.39 15 26 H 0.17 2.81 7.31 -52.49 -0.38 2.42 15 27 H 0.14 2.29 6.35 -52.49 -0.33 1.95 15 28 H 0.14 3.30 4.78 -52.49 -0.25 3.04 15 29 H 0.30 6.36 8.30 -40.82 -0.34 6.02 15 LS Contribution 254.09 15.07 3.83 3.83 Total: -1.00 -29.13 254.09 -4.73 -33.85 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -2.20 Total: 2.70 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -2.56 Total: 1.82 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.48 Total: -38.57 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.11 Total: -19.11 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.17 Total: 15.48 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -29.13 -4.73 -33.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260568056.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.559 kcal (2) G-P(sol) polarization free energy of solvation -29.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds