Wall clock time and date at job start Mon Mar 30 2020 04:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35480 * 116.99843 * 2 1 4 4 C 1.40719 * 120.35509 * 180.02562 * 3 2 1 5 5 C 1.35001 * 119.91888 * 179.91711 * 4 3 2 6 6 N 1.36400 * 121.01421 * 0.09302 * 5 4 3 7 7 C 1.36932 * 120.82715 * 359.92716 * 6 5 4 8 8 C 1.38404 * 120.35687 * 359.97438 * 3 2 1 9 9 N 1.33688 * 121.74623 * 180.02562 * 7 6 5 10 10 C 1.31322 * 122.64492 * 359.62266 * 9 7 6 11 11 C 1.41196 * 119.63875 * 0.65362 * 10 9 7 12 12 C 1.40503 * 121.13146 * 179.69043 * 11 10 9 13 13 H 1.08006 * 120.00440 * 150.77149 * 12 11 10 14 14 C 1.39818 * 119.99891 * 330.49756 * 12 11 10 15 15 N 1.31027 * 120.00062 * 161.66721 * 14 12 11 16 16 Si 1.86801 * 120.00238 * 341.66723 * 14 12 11 17 17 H 1.48505 * 109.46944 * 95.36688 * 16 14 12 18 18 H 1.48494 * 109.47463 * 215.36637 * 16 14 12 19 19 H 1.48500 * 109.46931 * 335.36892 * 16 14 12 20 20 C 1.35234 * 119.10639 * 179.97438 * 6 5 4 21 21 O 1.21784 * 120.92098 * 0.02761 * 20 6 5 22 22 H 1.09004 * 109.47247 * 299.99949 * 1 2 3 23 23 H 1.09003 * 109.47632 * 60.00087 * 1 2 3 24 24 H 1.09001 * 109.47309 * 180.02562 * 1 2 3 25 25 H 1.08000 * 120.03749 * 359.97156 * 4 3 2 26 26 H 1.08001 * 119.49302 * 180.02562 * 5 4 3 27 27 H 1.08001 * 120.26572 * 0.04868 * 8 3 2 28 28 H 1.08001 * 120.18535 * 180.34624 * 10 9 7 29 29 H 0.97002 * 120.00277 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2071 0.0000 4 6 3.4488 1.2895 -0.0005 5 6 4.0525 2.4971 -0.0022 6 7 3.3211 3.6484 -0.0015 7 6 1.9523 3.6103 -0.0006 8 6 1.2974 2.3726 -0.0005 9 7 1.2175 4.7271 -0.0004 10 6 1.7519 5.9267 0.0062 11 6 3.1570 6.0652 -0.0006 12 6 3.7620 7.3333 -0.0003 13 1 4.7335 7.4681 0.4518 14 6 3.1088 8.4195 -0.5905 15 7 3.4717 9.6428 -0.2927 16 14 1.7187 8.1268 -1.8036 17 1 0.4175 8.1959 -1.0913 18 1 1.7589 9.1667 -2.8629 19 1 1.8746 6.7852 -2.4207 20 6 3.9658 4.8372 -0.0028 21 8 5.1825 4.8893 -0.0050 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 4.0432 0.3878 -0.0005 26 1 5.1311 2.5523 -0.0031 27 1 0.2183 2.3277 -0.0002 28 1 1.1201 6.8026 0.0117 29 1 3.0183 10.3964 -0.7019 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260568056.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:29 Heat of formation + Delta-G solvation = -24.428834 kcal Electronic energy + Delta-G solvation = -17264.630834 eV Core-core repulsion = 14346.225463 eV Total energy + Delta-G solvation = -2918.405371 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.93607 -40.40225 -38.56032 -37.80559 -35.72013 -33.78324 -32.75607 -30.94200 -28.73302 -27.01055 -25.50066 -24.03588 -23.74048 -20.93735 -19.52054 -19.01328 -18.62033 -17.68981 -17.32545 -17.07519 -16.48002 -16.43285 -15.90733 -15.31950 -14.77431 -14.61498 -14.27552 -14.15814 -13.90372 -13.46400 -13.14902 -12.97670 -12.77922 -12.39929 -12.22806 -11.93313 -11.53634 -11.06671 -10.57511 -10.35718 -10.22569 -9.15879 -8.82090 -6.29298 -0.41810 -0.22575 1.15105 1.20584 1.35596 1.41126 1.58095 1.74633 2.02023 2.24640 2.52613 3.22093 3.42186 3.51508 3.87800 4.04587 4.16604 4.40229 4.47901 4.49343 4.69453 4.74241 4.84952 4.92367 5.06590 5.12109 5.27269 5.59697 5.82244 5.86019 6.17214 6.33961 6.37288 6.92592 7.34548 7.90169 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.035946 B = 0.007270 C = 0.006273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.769205 B = 3850.477524 C = 4462.459303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.308 6.308 3 C 0.149 3.851 4 C -0.149 4.149 5 C 0.083 3.917 6 N -0.440 5.440 7 C 0.248 3.752 8 C -0.211 4.211 9 N -0.493 5.493 10 C -0.064 4.064 11 C -0.085 4.085 12 C -0.394 4.394 13 H 0.063 0.937 14 C 0.046 3.954 15 N -0.809 5.809 16 Si 0.971 3.029 17 H -0.243 1.243 18 H -0.261 1.261 19 H -0.269 1.269 20 C 0.478 3.522 21 O -0.573 6.573 22 H 0.064 0.936 23 H 0.063 0.937 24 H 0.130 0.870 25 H 0.192 0.808 26 H 0.180 0.820 27 H 0.167 0.833 28 H 0.146 0.854 29 H 0.307 0.693 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.575 -15.530 -1.638 17.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.220 6.220 3 C 0.096 3.904 4 C -0.171 4.171 5 C -0.037 4.037 6 N -0.150 5.150 7 C 0.007 3.993 8 C -0.232 4.232 9 N -0.213 5.213 10 C -0.212 4.212 11 C -0.094 4.094 12 C -0.423 4.423 13 H 0.081 0.919 14 C -0.173 4.173 15 N -0.433 5.433 16 Si 0.793 3.207 17 H -0.167 1.167 18 H -0.186 1.186 19 H -0.193 1.193 20 C 0.280 3.720 21 O -0.456 6.456 22 H 0.082 0.918 23 H 0.082 0.918 24 H 0.148 0.852 25 H 0.209 0.791 26 H 0.197 0.803 27 H 0.184 0.816 28 H 0.162 0.838 29 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.619 -15.183 -1.627 17.065 hybrid contribution 0.584 0.917 -0.274 1.121 sum -7.035 -14.266 -1.901 16.019 Atomic orbital electron populations 1.23454 0.76005 1.06039 1.02511 1.85941 1.23720 1.24974 1.87334 1.19135 0.92133 0.84392 0.94699 1.20418 0.91993 0.97507 1.07143 1.22193 0.99578 0.84174 0.97713 1.43622 1.08297 1.08029 1.55042 1.19540 0.77571 0.95154 1.07079 1.20819 1.01195 0.87220 1.13981 1.67559 1.36366 0.97403 1.19952 1.22062 0.90980 0.93936 1.14202 1.20526 0.93448 0.92244 1.03159 1.19066 1.04182 0.90891 1.28204 0.91922 1.26902 0.99378 0.93449 0.97603 1.69714 1.37930 1.00480 1.35140 0.85367 0.78037 0.78998 0.78323 1.16740 1.18638 1.19338 1.19350 0.88118 0.83918 0.80623 1.90684 1.13828 1.86465 1.54664 0.91763 0.91807 0.85183 0.79119 0.80260 0.81596 0.83754 0.88119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.82 113.37 1.11 1.31 15 2 O -0.31 -6.58 10.49 -87.79 -0.92 -7.50 15 3 C 0.15 3.98 6.74 22.92 0.15 4.13 15 4 C -0.15 -3.83 9.96 22.13 0.22 -3.61 15 5 C 0.08 2.77 10.06 83.24 0.84 3.61 15 6 N -0.44 -19.14 2.78 -471.57 -1.31 -20.45 15 7 C 0.25 10.40 7.33 133.59 0.98 11.38 15 8 C -0.21 -6.71 8.96 22.74 0.20 -6.51 15 9 N -0.49 -22.88 10.19 -191.14 -1.95 -24.83 15 10 C -0.06 -3.21 8.46 85.50 0.72 -2.48 15 11 C -0.08 -4.62 5.28 -19.69 -0.10 -4.73 15 12 C -0.39 -22.77 9.31 23.20 0.22 -22.56 15 13 H 0.06 3.98 8.02 -2.91 -0.02 3.96 15 14 C 0.05 2.39 5.42 85.20 0.46 2.86 15 15 N -0.81 -42.30 13.94 21.82 0.30 -41.99 15 16 Si 0.97 41.90 24.54 68.60 1.68 43.59 15 17 H -0.24 -9.69 6.71 99.48 0.67 -9.03 15 18 H -0.26 -10.17 7.11 99.48 0.71 -9.47 15 19 H -0.27 -12.49 6.86 99.48 0.68 -11.81 15 20 C 0.48 25.03 7.58 86.48 0.66 25.68 15 21 O -0.57 -31.92 16.27 -4.62 -0.08 -31.99 15 22 H 0.06 0.88 7.67 -2.39 -0.02 0.87 15 23 H 0.06 0.88 7.67 -2.39 -0.02 0.86 15 24 H 0.13 1.04 8.14 -2.39 -0.02 1.02 15 25 H 0.19 3.27 8.06 -2.91 -0.02 3.25 15 26 H 0.18 5.61 7.31 -2.91 -0.02 5.58 15 27 H 0.17 4.50 6.35 -2.91 -0.02 4.49 15 28 H 0.15 6.97 4.78 -2.91 -0.01 6.96 15 29 H 0.31 14.02 8.30 -92.71 -0.77 13.25 15 Total: -1.00 -68.50 254.09 4.32 -64.17 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: 1.13 Total: 9.93 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: 5.46 Total: 9.08 kcal Atomic # 7 Polarization: -84.33 SS G_CDS: -2.95 Total: -87.28 kcal Atomic # 8 Polarization: -38.50 SS G_CDS: -1.00 Total: -39.49 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 1.68 Total: 43.59 kcal Total: -68.50 4.32 -64.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260568056.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.746 kcal (2) G-P(sol) polarization free energy of solvation -68.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds