Wall clock time and date at job start Mon Mar 30 2020 04:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35969 * 117.00360 * 2 1 4 4 C 1.40386 * 120.06028 * 179.97438 * 3 2 1 5 5 C 1.36466 * 119.55842 * 180.02562 * 4 3 2 6 6 C 1.40483 * 119.74123 * 0.02562 * 5 4 3 7 7 N 1.33584 * 118.78313 * 179.97438 * 6 5 4 8 8 C 1.31319 * 122.67518 * 179.57742 * 7 6 5 9 9 C 1.41215 * 119.62315 * 0.74747 * 8 7 6 10 10 C 1.40443 * 121.15888 * 179.61758 * 9 8 7 11 11 H 1.08005 * 119.99768 * 155.64248 * 10 9 8 12 12 C 1.39881 * 120.00071 * 335.37783 * 10 9 8 13 13 N 1.30975 * 119.99758 * 343.33811 * 12 10 9 14 14 Si 1.86803 * 119.99892 * 163.34404 * 12 10 9 15 15 H 1.48498 * 109.47284 * 59.99809 * 14 12 10 16 16 H 1.48496 * 109.46673 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47165 * 299.99432 * 14 12 10 18 18 C 1.47073 * 117.68370 * 359.35316 * 9 8 7 19 19 O 1.21796 * 120.94202 * 180.29155 * 18 9 8 20 20 N 1.35200 * 118.12142 * 0.26928 * 18 9 8 21 21 C 1.35869 * 120.05258 * 359.97438 * 3 2 1 22 22 H 1.08993 * 109.46982 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46883 * 300.00377 * 1 2 3 24 24 H 1.09006 * 109.46729 * 59.99769 * 1 2 3 25 25 H 1.07993 * 120.21538 * 0.04493 * 4 3 2 26 26 H 1.08003 * 120.13190 * 180.02562 * 5 4 3 27 27 H 1.08000 * 120.18380 * 180.37374 * 8 7 6 28 28 H 0.97000 * 119.99552 * 180.02562 * 13 12 10 29 29 H 1.08003 * 119.65948 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 3.4483 1.2863 0.0005 5 6 4.0572 2.5076 0.0011 6 6 3.2766 3.6756 0.0016 7 7 3.8926 4.8609 0.0026 8 6 3.2387 5.9997 -0.0050 9 6 1.8266 5.9938 0.0013 10 6 1.0949 7.1926 0.0016 11 1 0.0846 7.2086 -0.3798 12 6 1.6728 8.3646 0.5007 13 7 2.7419 8.2980 1.2545 14 14 0.9196 10.0246 0.0925 15 1 -0.4772 10.0713 0.5944 16 1 1.7135 11.1005 0.7384 17 1 0.9236 10.2214 -1.3794 18 6 1.1487 4.6886 0.0017 19 8 -0.0670 4.6143 0.0016 20 7 1.9132 3.5735 0.0015 21 6 1.3076 2.3517 -0.0005 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 4.0408 0.3834 0.0002 26 1 5.1351 2.5760 0.0011 27 1 3.7780 6.9354 -0.0099 28 1 3.1423 9.1107 1.6009 29 1 0.2293 2.2898 -0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260583974.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:59 Heat of formation + Delta-G solvation = -6.082425 kcal Electronic energy + Delta-G solvation = -17250.095800 eV Core-core repulsion = 14332.485989 eV Total energy + Delta-G solvation = -2917.609811 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.90476 -38.74062 -36.62668 -35.71611 -33.94510 -32.60126 -30.04652 -28.67878 -27.38904 -25.83975 -23.08755 -22.73253 -21.68881 -19.03260 -17.86142 -17.02627 -16.70904 -15.89075 -15.60537 -15.37139 -14.70614 -14.55150 -14.12788 -13.52985 -13.38500 -12.98526 -12.23189 -12.08029 -11.92481 -11.73755 -11.52015 -11.47565 -11.28629 -10.77448 -10.75425 -10.40970 -9.68342 -9.31669 -8.99461 -8.58228 -7.96853 -7.41789 -6.85600 -4.35563 1.26758 1.82349 2.80084 2.82850 2.86492 3.44414 3.44917 3.55332 3.58621 3.86831 4.30833 5.20257 5.29970 5.36016 5.37857 5.42962 5.51871 5.65407 5.85389 6.05206 6.11646 6.53613 6.65289 6.77113 6.86461 6.97401 7.28959 7.47163 7.79987 7.84102 7.93767 8.11703 8.24595 9.13190 9.42647 9.53658 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.040171 B = 0.006557 C = 0.005730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.855598 B = 4268.990138 C = 4885.380980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.315 6.315 3 C 0.088 3.912 4 C -0.185 4.185 5 C -0.013 4.013 6 C 0.136 3.864 7 N -0.451 5.451 8 C -0.013 4.013 9 C -0.024 4.024 10 C -0.338 4.338 11 H 0.100 0.900 12 C 0.054 3.946 13 N -0.744 5.744 14 Si 0.933 3.067 15 H -0.258 1.258 16 H -0.270 1.270 17 H -0.255 1.255 18 C 0.473 3.527 19 O -0.571 6.571 20 N -0.406 5.406 21 C -0.054 4.054 22 H 0.096 0.904 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.129 0.871 26 H 0.144 0.856 27 H 0.160 0.840 28 H 0.297 0.703 29 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.044 -5.100 -1.318 5.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.228 6.228 3 C 0.040 3.960 4 C -0.208 4.208 5 C -0.033 4.033 6 C -0.096 4.096 7 N -0.167 5.167 8 C -0.170 4.170 9 C -0.033 4.033 10 C -0.367 4.367 11 H 0.118 0.882 12 C -0.169 4.169 13 N -0.365 5.365 14 Si 0.755 3.245 15 H -0.182 1.182 16 H -0.195 1.195 17 H -0.179 1.179 18 C 0.274 3.726 19 O -0.455 6.455 20 N -0.120 5.120 21 C -0.173 4.173 22 H 0.114 0.886 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.147 0.853 26 H 0.161 0.839 27 H 0.177 0.823 28 H 0.109 0.891 29 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.394 -5.055 -1.150 5.199 hybrid contribution -1.399 0.808 0.087 1.618 sum -1.005 -4.247 -1.063 4.492 Atomic orbital electron populations 1.22986 0.79160 1.03269 1.01588 1.86031 1.20698 1.26305 1.89745 1.18003 0.92090 0.83245 1.02625 1.20026 0.90828 0.97945 1.11967 1.20459 0.99358 0.88665 0.94819 1.18934 0.79014 0.93840 1.17827 1.67572 1.38290 0.96777 1.14079 1.22534 0.90463 0.94193 1.09850 1.20617 0.94144 0.90757 0.97829 1.19699 1.00882 0.90859 1.25277 0.88232 1.26324 0.94852 1.02826 0.92947 1.69826 1.15655 1.32906 1.18148 0.85907 0.80181 0.77841 0.80562 1.18176 1.19486 1.17946 1.19215 0.87111 0.84227 0.82073 1.90673 1.12836 1.86319 1.55714 1.42625 1.07303 1.06175 1.55868 1.21373 0.99059 0.84564 1.12255 0.88597 0.92799 0.92797 0.85277 0.83851 0.82284 0.89127 0.82816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 15 2 O -0.31 -5.19 10.51 -19.64 -0.21 -5.39 15 3 C 0.09 1.67 6.66 -39.62 -0.26 1.40 15 4 C -0.18 -3.27 10.02 -39.41 -0.39 -3.67 15 5 C -0.01 -0.25 9.92 -39.38 -0.39 -0.64 15 6 C 0.14 3.20 7.34 -155.66 -1.14 2.06 15 7 N -0.45 -11.16 10.19 -11.72 -0.12 -11.28 15 8 C -0.01 -0.34 9.96 -16.64 -0.17 -0.50 15 9 C -0.02 -0.63 5.75 -104.35 -0.60 -1.23 15 10 C -0.34 -8.53 8.82 -38.14 -0.34 -8.87 15 11 H 0.10 2.48 7.80 -52.48 -0.41 2.07 15 12 C 0.05 1.22 5.19 -17.30 -0.09 1.13 15 13 N -0.74 -17.09 10.95 55.55 0.61 -16.48 15 14 Si 0.93 16.56 29.59 -169.99 -5.03 11.53 15 15 H -0.26 -4.59 7.11 56.52 0.40 -4.19 15 16 H -0.27 -4.57 7.11 56.52 0.40 -4.17 15 17 H -0.26 -4.48 7.11 56.52 0.40 -4.08 15 18 C 0.47 12.78 7.58 -12.49 -0.09 12.68 15 19 O -0.57 -16.12 16.24 5.10 0.08 -16.04 15 20 N -0.41 -9.96 2.77 -62.86 -0.17 -10.13 15 21 C -0.05 -1.15 9.12 -16.38 -0.15 -1.30 15 22 H 0.10 0.91 8.14 -51.93 -0.42 0.49 15 23 H 0.05 0.69 7.65 -51.93 -0.40 0.30 15 24 H 0.05 0.69 7.65 -51.93 -0.40 0.29 15 25 H 0.13 1.89 8.06 -52.49 -0.42 1.46 15 26 H 0.14 2.33 8.06 -52.48 -0.42 1.91 15 27 H 0.16 4.02 6.22 -52.49 -0.33 3.70 15 28 H 0.30 6.01 8.30 -40.82 -0.34 5.67 15 29 H 0.15 3.19 5.45 -52.48 -0.29 2.90 15 LS Contribution 259.06 15.07 3.90 3.90 Total: -1.00 -29.38 259.06 -5.79 -35.17 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -2.22 Total: 6.34 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -2.64 Total: 2.37 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.31 Total: -37.89 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.12 Total: -21.43 kcal Atomic # 14 Polarization: 16.56 SS G_CDS: -5.03 Total: 11.53 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.38 -5.79 -35.17 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260583974.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.092 kcal (2) G-P(sol) polarization free energy of solvation -29.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds