Wall clock time and date at job start Mon Mar 30 2020 04:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35969 * 117.00360 * 2 1 4 4 C 1.40386 * 120.06028 * 179.97438 * 3 2 1 5 5 C 1.36466 * 119.55842 * 180.02562 * 4 3 2 6 6 C 1.40483 * 119.74123 * 0.02562 * 5 4 3 7 7 N 1.33584 * 118.78313 * 179.97438 * 6 5 4 8 8 C 1.31319 * 122.67518 * 179.57742 * 7 6 5 9 9 C 1.41215 * 119.62315 * 0.74747 * 8 7 6 10 10 C 1.40443 * 121.15888 * 179.61758 * 9 8 7 11 11 H 1.08005 * 119.99768 * 155.64248 * 10 9 8 12 12 C 1.39881 * 120.00071 * 335.37783 * 10 9 8 13 13 N 1.30975 * 119.99758 * 343.33811 * 12 10 9 14 14 Si 1.86803 * 119.99892 * 163.34404 * 12 10 9 15 15 H 1.48498 * 109.47284 * 59.99809 * 14 12 10 16 16 H 1.48496 * 109.46673 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47165 * 299.99432 * 14 12 10 18 18 C 1.47073 * 117.68370 * 359.35316 * 9 8 7 19 19 O 1.21796 * 120.94202 * 180.29155 * 18 9 8 20 20 N 1.35200 * 118.12142 * 0.26928 * 18 9 8 21 21 C 1.35869 * 120.05258 * 359.97438 * 3 2 1 22 22 H 1.08993 * 109.46982 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.46883 * 300.00377 * 1 2 3 24 24 H 1.09006 * 109.46729 * 59.99769 * 1 2 3 25 25 H 1.07993 * 120.21538 * 0.04493 * 4 3 2 26 26 H 1.08003 * 120.13190 * 180.02562 * 5 4 3 27 27 H 1.08000 * 120.18380 * 180.37374 * 8 7 6 28 28 H 0.97000 * 119.99552 * 180.02562 * 13 12 10 29 29 H 1.08003 * 119.65948 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 3.4483 1.2863 0.0005 5 6 4.0572 2.5076 0.0011 6 6 3.2766 3.6756 0.0016 7 7 3.8926 4.8609 0.0026 8 6 3.2387 5.9997 -0.0050 9 6 1.8266 5.9938 0.0013 10 6 1.0949 7.1926 0.0016 11 1 0.0846 7.2086 -0.3798 12 6 1.6728 8.3646 0.5007 13 7 2.7419 8.2980 1.2545 14 14 0.9196 10.0246 0.0925 15 1 -0.4772 10.0713 0.5944 16 1 1.7135 11.1005 0.7384 17 1 0.9236 10.2214 -1.3794 18 6 1.1487 4.6886 0.0017 19 8 -0.0670 4.6143 0.0016 20 7 1.9132 3.5735 0.0015 21 6 1.3076 2.3517 -0.0005 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 4.0408 0.3834 0.0002 26 1 5.1351 2.5760 0.0011 27 1 3.7780 6.9354 -0.0099 28 1 3.1423 9.1107 1.6009 29 1 0.2293 2.2898 -0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260583974.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:59 Heat of formation + Delta-G solvation = -24.943958 kcal Electronic energy + Delta-G solvation = -17250.913697 eV Core-core repulsion = 14332.485989 eV Total energy + Delta-G solvation = -2918.427709 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.74802 -40.27431 -38.51565 -37.49092 -35.64264 -34.38312 -31.82947 -30.37794 -28.71739 -27.55579 -24.86899 -24.44718 -23.51470 -20.74007 -19.49399 -18.83387 -18.44959 -17.55246 -17.21959 -16.97617 -16.36373 -16.29625 -15.64435 -15.11059 -14.91248 -14.71444 -14.05920 -13.75502 -13.66152 -13.24228 -13.05298 -12.97872 -12.82658 -12.26488 -12.16127 -12.06025 -11.34102 -10.97410 -10.91605 -10.50700 -9.72220 -9.07043 -8.64721 -6.22641 -0.40948 0.03043 1.33103 1.36678 1.48067 1.50416 1.77208 1.94170 2.11597 2.34584 2.60135 3.39794 3.58502 3.71678 3.86286 4.16054 4.21283 4.31083 4.40762 4.57792 4.69416 4.81487 5.01637 5.11776 5.19030 5.26489 5.46135 5.72345 6.00130 6.06069 6.19712 6.34267 6.43341 7.16299 7.49760 7.94603 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.040171 B = 0.006557 C = 0.005730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.855598 B = 4268.990138 C = 4885.380980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.308 6.308 3 C 0.114 3.886 4 C -0.144 4.144 5 C -0.028 4.028 6 C 0.145 3.855 7 N -0.470 5.470 8 C -0.018 4.018 9 C -0.058 4.058 10 C -0.386 4.386 11 H 0.084 0.916 12 C 0.025 3.975 13 N -0.778 5.778 14 Si 1.005 2.995 15 H -0.260 1.260 16 H -0.251 1.251 17 H -0.253 1.253 18 C 0.445 3.555 19 O -0.604 6.604 20 N -0.403 5.403 21 C -0.095 4.095 22 H 0.138 0.862 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.180 0.820 26 H 0.181 0.819 27 H 0.157 0.843 28 H 0.308 0.692 29 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.169 -7.584 -1.413 7.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.220 6.220 3 C 0.065 3.935 4 C -0.167 4.167 5 C -0.047 4.047 6 C -0.091 4.091 7 N -0.187 5.187 8 C -0.173 4.173 9 C -0.068 4.068 10 C -0.415 4.415 11 H 0.103 0.897 12 C -0.196 4.196 13 N -0.401 5.401 14 Si 0.823 3.177 15 H -0.184 1.184 16 H -0.174 1.174 17 H -0.176 1.176 18 C 0.247 3.753 19 O -0.492 6.492 20 N -0.114 5.114 21 C -0.213 4.213 22 H 0.156 0.844 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.198 0.802 26 H 0.198 0.802 27 H 0.174 0.826 28 H 0.120 0.880 29 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 1.612 -7.553 -1.240 7.822 hybrid contribution -1.683 0.937 0.112 1.930 sum -0.071 -6.616 -1.128 6.712 Atomic orbital electron populations 1.23344 0.76943 1.06053 1.01503 1.86069 1.22840 1.24347 1.88722 1.18310 0.92879 0.83329 0.98952 1.20677 0.90396 0.99214 1.06404 1.20905 1.00926 0.87310 0.95567 1.19951 0.79018 0.95253 1.14844 1.67599 1.38189 0.96929 1.15988 1.22464 0.90210 0.94592 1.10068 1.20842 0.94777 0.91241 0.99912 1.19739 1.00871 0.92181 1.28674 0.89747 1.27138 0.95085 1.05484 0.91851 1.69809 1.16906 1.34442 1.18904 0.84892 0.79130 0.73345 0.80368 1.18443 1.17384 1.17641 1.19477 0.87169 0.85211 0.83402 1.90602 1.13799 1.86806 1.57971 1.42787 1.07837 1.06820 1.53984 1.21622 0.99742 0.84420 1.15561 0.84368 0.93010 0.92851 0.80226 0.80169 0.82625 0.87981 0.82955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.47 15 2 O -0.31 -8.70 10.51 -93.20 -0.98 -9.68 15 3 C 0.11 3.87 6.66 22.24 0.15 4.02 15 4 C -0.14 -4.29 10.02 22.38 0.22 -4.07 15 5 C -0.03 -0.95 9.92 22.40 0.22 -0.73 15 6 C 0.14 6.70 7.34 133.80 0.98 7.68 15 7 N -0.47 -23.47 10.19 -190.99 -1.95 -25.41 15 8 C -0.02 -0.98 9.96 85.50 0.85 -0.13 15 9 C -0.06 -3.32 5.75 -19.69 -0.11 -3.43 15 10 C -0.39 -20.94 8.82 23.21 0.20 -20.74 15 11 H 0.08 4.61 7.80 -2.91 -0.02 4.59 15 12 C 0.02 1.16 5.19 85.22 0.44 1.60 15 13 N -0.78 -37.28 10.95 21.83 0.24 -37.04 15 14 Si 1.01 34.98 29.59 68.60 2.03 37.01 15 15 H -0.26 -9.05 7.11 99.48 0.71 -8.34 15 16 H -0.25 -7.80 7.11 99.48 0.71 -7.10 15 17 H -0.25 -8.57 7.11 99.48 0.71 -7.86 15 18 C 0.44 25.31 7.58 86.49 0.66 25.96 15 19 O -0.60 -36.25 16.24 -4.66 -0.08 -36.32 15 20 N -0.40 -20.00 2.77 -470.71 -1.30 -21.30 15 21 C -0.09 -3.99 9.12 83.44 0.76 -3.23 15 22 H 0.14 1.96 8.14 -2.39 -0.02 1.94 15 23 H 0.05 1.21 7.65 -2.39 -0.02 1.19 15 24 H 0.05 1.23 7.65 -2.38 -0.02 1.22 15 25 H 0.18 3.76 8.06 -2.91 -0.02 3.73 15 26 H 0.18 4.93 8.06 -2.91 -0.02 4.91 15 27 H 0.16 8.30 6.22 -2.91 -0.02 8.29 15 28 H 0.31 12.81 8.30 -92.71 -0.77 12.04 15 29 H 0.15 6.37 5.45 -2.91 -0.02 6.36 15 Total: -1.00 -68.02 259.06 4.65 -63.37 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 1.19 Total: 20.97 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 5.49 Total: 8.40 kcal Atomic # 7 Polarization: -80.74 SS G_CDS: -3.01 Total: -83.75 kcal Atomic # 8 Polarization: -44.95 SS G_CDS: -1.05 Total: -46.01 kcal Atomic # 14 Polarization: 34.98 SS G_CDS: 2.03 Total: 37.01 kcal Total: -68.02 4.65 -63.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260583974.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.426 kcal (2) G-P(sol) polarization free energy of solvation -68.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds