Wall clock time and date at job start Mon Mar 30 2020 03:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00264 * 2 1 4 4 H 1.48501 * 109.46911 * 270.00762 * 3 2 1 5 5 H 1.48494 * 109.46856 * 30.00490 * 3 2 1 6 6 H 1.48501 * 109.46883 * 150.00600 * 3 2 1 7 7 C 1.37877 * 119.99963 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00065 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00323 * 179.97438 * 7 2 1 10 10 C 1.50697 * 109.47268 * 179.97438 * 9 7 2 11 11 N 1.31714 * 120.77540 * 270.25439 * 10 9 7 12 12 C 1.32987 * 121.57446 * 180.29853 * 11 10 9 13 13 O 1.35458 * 118.65136 * 179.70180 * 12 11 10 14 14 N 1.31675 * 122.69596 * 359.42962 * 12 11 10 15 15 C 1.33902 * 120.22718 * 0.27571 * 14 12 11 16 16 C 1.40296 * 121.93063 * 180.02562 * 15 14 12 17 17 C 1.36137 * 119.67204 * 179.97438 * 16 15 14 18 18 C 1.39800 * 121.02552 * 0.02562 * 17 16 15 19 19 O 1.35922 * 119.57562 * 180.02562 * 18 17 16 20 20 C 1.36670 * 120.84059 * 359.97438 * 18 17 16 21 21 C 1.40223 * 119.46298 * 0.02562 * 20 18 17 22 22 H 0.97000 * 119.99968 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.46943 * 59.99447 * 9 7 2 24 24 H 1.08997 * 109.47054 * 299.99815 * 9 7 2 25 25 H 0.96700 * 114.00348 * 269.73698 * 13 12 11 26 26 H 1.08004 * 120.16094 * 0.02562 * 16 15 14 27 27 H 1.07999 * 119.48859 * 179.97438 * 17 16 15 28 28 H 0.96700 * 114.00514 * 89.99656 * 19 18 17 29 29 H 1.08001 * 120.27169 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0138 -2.6149 -0.0010 11 7 4.2341 -3.2518 1.1307 12 6 4.6828 -4.5035 1.1494 13 8 4.8947 -5.0997 2.3471 14 7 4.9246 -5.1889 0.0514 15 6 4.7262 -4.6304 -1.1493 16 6 4.9716 -5.3278 -2.3417 17 6 4.7535 -4.7152 -3.5378 18 6 4.2880 -3.3984 -3.5986 19 8 4.0799 -2.8157 -4.8088 20 6 4.0386 -2.6899 -2.4568 21 6 4.2537 -3.2938 -1.2097 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6805 0.8888 24 1 3.8745 -0.6802 -0.8911 25 1 5.7890 -4.9782 2.6943 26 1 5.3310 -6.3458 -2.3109 27 1 4.9438 -5.2547 -4.4538 28 1 3.1868 -2.9414 -5.1576 29 1 3.6788 -1.6733 -2.5146 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260600270.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:59 Heat of formation + Delta-G solvation = -14.298558 kcal Electronic energy + Delta-G solvation = -17056.956238 eV Core-core repulsion = 14138.990148 eV Total energy + Delta-G solvation = -2917.966090 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.15771 -38.88582 -37.25135 -35.61068 -34.39381 -32.67153 -31.13634 -29.72904 -28.33559 -24.66698 -23.54924 -22.91537 -20.89469 -19.32107 -18.54643 -17.91281 -17.02347 -16.28201 -16.08305 -15.32880 -14.88755 -14.39149 -14.00474 -13.90490 -13.19987 -13.11103 -12.44731 -12.20540 -12.07263 -11.69732 -11.58371 -11.10380 -10.88064 -10.63903 -10.58313 -10.47707 -9.92653 -9.53176 -8.99289 -8.74288 -8.66778 -7.91450 -6.23127 -4.26029 0.47229 0.86824 2.10410 2.94556 3.18616 3.28159 3.29539 3.44116 4.13047 4.27095 4.34524 4.50553 4.65825 4.85103 5.08077 5.13715 5.32183 5.45673 5.81967 5.85494 6.04197 6.12537 6.41321 6.49814 6.61347 6.74153 6.82664 7.26931 7.41050 7.67649 7.76588 8.25950 8.45735 8.77190 9.32715 10.89034 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.017675 B = 0.009192 C = 0.006560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.763445 B = 3045.427162 C = 4267.171321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.078 3.922 3 Si 0.875 3.125 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.262 1.262 7 C -0.517 4.517 8 H 0.074 0.926 9 C 0.021 3.979 10 C 0.300 3.700 11 N -0.539 5.539 12 C 0.501 3.499 13 O -0.462 6.462 14 N -0.540 5.540 15 C 0.174 3.826 16 C -0.102 4.102 17 C -0.097 4.097 18 C 0.079 3.921 19 O -0.497 6.497 20 C -0.067 4.067 21 C -0.162 4.162 22 H 0.268 0.732 23 H 0.053 0.947 24 H 0.043 0.957 25 H 0.405 0.595 26 H 0.140 0.860 27 H 0.135 0.865 28 H 0.390 0.610 29 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.359 -6.271 -6.244 13.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.125 4.125 3 Si 0.701 3.299 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.556 4.556 8 H 0.092 0.908 9 C -0.017 4.017 10 C 0.143 3.857 11 N -0.263 5.263 12 C 0.196 3.804 13 O -0.264 6.264 14 N -0.268 5.268 15 C 0.046 3.954 16 C -0.121 4.121 17 C -0.118 4.118 18 C 0.034 3.966 19 O -0.308 6.308 20 C -0.088 4.088 21 C -0.167 4.167 22 H 0.078 0.922 23 H 0.071 0.929 24 H 0.061 0.939 25 H 0.263 0.737 26 H 0.158 0.842 27 H 0.153 0.847 28 H 0.246 0.754 29 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 10.427 -6.805 -5.252 13.514 hybrid contribution 0.048 1.072 -0.562 1.211 sum 10.476 -5.734 -5.814 13.282 Atomic orbital electron populations 1.69869 1.06253 1.27394 1.49198 1.24891 0.94759 0.98913 0.93968 0.86841 0.80607 0.83512 0.78914 1.19754 1.20818 1.18650 1.20581 0.86707 0.95129 1.53170 0.90778 1.18990 0.98383 0.85132 0.99215 1.22566 0.81293 0.96977 0.84886 1.67750 1.17233 1.09344 1.31950 1.20284 0.90422 0.84638 0.85047 1.84697 1.36953 1.74015 1.30757 1.68165 1.22840 1.37941 0.97817 1.18692 0.94826 0.90299 0.91543 1.20493 1.01850 1.00346 0.89368 1.21229 0.98286 0.93953 0.98372 1.18098 1.02056 0.91370 0.85061 1.84827 1.36688 1.76783 1.32456 1.21437 0.95787 1.01536 0.90003 1.19332 1.05283 0.96054 0.96044 0.92182 0.92906 0.93921 0.73680 0.84229 0.84666 0.75378 0.82964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.07 13.96 55.43 0.77 -25.30 15 2 C 0.08 2.14 5.47 -17.82 -0.10 2.04 15 3 Si 0.88 19.99 27.47 -169.99 -4.67 15.32 15 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 15 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 6 H -0.26 -5.73 6.54 56.52 0.37 -5.36 15 7 C -0.52 -14.00 9.65 -34.44 -0.33 -14.33 15 8 H 0.07 2.25 7.98 -52.48 -0.42 1.83 15 9 C 0.02 0.47 3.95 -29.04 -0.11 0.36 15 10 C 0.30 6.48 6.09 -81.72 -0.50 5.98 15 11 N -0.54 -11.71 10.36 -10.55 -0.11 -11.82 15 12 C 0.50 9.81 8.66 -91.22 -0.79 9.02 15 13 O -0.46 -7.56 13.64 -18.07 -0.25 -7.81 15 14 N -0.54 -10.24 10.47 -12.71 -0.13 -10.38 15 15 C 0.17 3.14 6.62 -84.79 -0.56 2.58 15 16 C -0.10 -1.45 10.00 -39.56 -0.40 -1.84 15 17 C -0.10 -1.23 9.88 -39.75 -0.39 -1.62 15 18 C 0.08 1.13 6.65 -39.56 -0.26 0.87 15 19 O -0.50 -6.21 13.47 -19.49 -0.26 -6.48 15 20 C -0.07 -1.15 9.24 -39.40 -0.36 -1.51 15 21 C -0.16 -3.12 5.74 -106.83 -0.61 -3.74 15 22 H 0.27 7.31 8.31 -40.82 -0.34 6.97 15 23 H 0.05 1.22 7.20 -51.93 -0.37 0.84 15 24 H 0.04 0.89 5.99 -51.93 -0.31 0.58 15 25 H 0.41 4.14 9.06 45.56 0.41 4.55 15 26 H 0.14 1.67 8.06 -52.48 -0.42 1.24 15 27 H 0.14 1.28 8.06 -52.49 -0.42 0.86 15 28 H 0.39 3.14 9.06 45.56 0.41 3.56 15 29 H 0.15 2.65 6.52 -52.49 -0.34 2.30 15 LS Contribution 262.30 15.07 3.95 3.95 Total: -1.00 -33.25 262.30 -5.75 -38.99 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -0.63 Total: 5.71 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -4.42 Total: -2.21 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 0.53 Total: -47.49 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.51 Total: -14.28 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -4.67 Total: 15.32 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -33.25 -5.75 -38.99 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260600270.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.696 kcal (2) G-P(sol) polarization free energy of solvation -33.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds