Wall clock time and date at job start Mon Mar 30 2020 03:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30704 * 1 3 3 Si 1.86803 * 119.99705 * 2 1 4 4 H 1.48502 * 109.47115 * 240.00245 * 3 2 1 5 5 H 1.48492 * 109.47393 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46958 * 120.00657 * 3 2 1 7 7 C 1.40243 * 120.00255 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99645 * 197.55281 * 7 2 1 9 9 C 1.40182 * 119.99837 * 17.55486 * 7 2 1 10 10 C 1.41538 * 121.48041 * 43.05239 * 9 7 2 11 11 N 1.38539 * 120.49333 * 359.80945 * 10 9 7 12 12 C 1.40295 * 119.01943 * 180.02562 * 10 9 7 13 13 O 1.35668 * 118.82796 * 179.78527 * 12 10 9 14 14 N 1.31262 * 122.34640 * 359.76206 * 12 10 9 15 15 C 1.34012 * 122.85059 * 0.02562 * 14 12 10 16 16 C 1.40359 * 120.77673 * 179.97438 * 15 14 12 17 17 C 1.37924 * 119.61691 * 180.02562 * 16 15 14 18 18 O 1.35860 * 119.64624 * 179.97438 * 17 16 15 19 19 C 1.39481 * 120.71153 * 359.97438 * 17 16 15 20 20 C 1.36620 * 120.63800 * 0.06429 * 19 17 16 21 21 C 1.39430 * 119.85851 * 359.91075 * 20 19 17 22 22 H 0.97001 * 119.99871 * 354.65789 * 1 2 3 23 23 H 0.97001 * 120.00236 * 189.33328 * 11 10 9 24 24 H 0.97006 * 119.99999 * 9.33916 * 11 10 9 25 25 H 0.96704 * 114.00293 * 269.98291 * 13 12 10 26 26 H 1.07993 * 120.19586 * 0.02562 * 16 15 14 27 27 H 0.96709 * 114.00327 * 90.00240 * 18 17 16 28 28 H 1.08001 * 119.68220 * 180.02562 * 19 17 16 29 29 H 1.07999 * 120.07183 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2410 1.6178 0.0000 4 1 3.0947 1.6965 -1.2125 5 1 1.2760 2.7465 0.0006 6 1 3.0949 1.6964 1.2125 7 6 2.0083 -1.2145 -0.0005 8 1 3.0505 -1.2363 0.2815 9 6 1.3564 -2.4001 -0.3672 10 6 0.4818 -2.4492 -1.4790 11 7 0.2437 -1.3142 -2.2368 12 6 -0.1440 -3.6633 -1.7995 13 8 -0.9850 -3.7050 -2.8633 14 7 0.0555 -4.7605 -1.1071 15 6 0.8683 -4.8108 -0.0428 16 6 1.0494 -6.0082 0.6666 17 6 1.8913 -6.0327 1.7589 18 8 2.0666 -7.1914 2.4464 19 6 2.5647 -4.8808 2.1652 20 6 2.4024 -3.7045 1.4896 21 6 1.5577 -3.6513 0.3815 22 1 -0.4850 0.8364 0.0782 23 1 -0.4550 -1.3181 -2.9097 24 1 0.7756 -0.5156 -2.0946 25 1 -1.9060 -3.5074 -2.6446 26 1 0.5326 -6.9052 0.3592 27 1 2.7947 -7.7370 2.1186 28 1 3.2203 -4.9190 3.0226 29 1 2.9279 -2.8180 1.8124 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260616035.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:04 Heat of formation + Delta-G solvation = -61.058798 kcal Electronic energy + Delta-G solvation = -17377.460067 eV Core-core repulsion = 14457.466302 eV Total energy + Delta-G solvation = -2919.993766 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.16803 -39.57459 -37.91358 -36.92944 -35.31530 -34.09667 -32.46757 -30.42742 -28.70093 -27.39101 -24.23117 -23.40264 -22.48042 -20.33053 -19.60464 -18.69265 -18.20683 -17.44567 -17.04271 -16.56311 -16.01219 -15.84175 -15.57987 -15.14698 -14.56841 -14.47554 -14.24499 -13.38885 -13.22278 -12.94408 -12.66154 -12.41062 -12.35571 -12.18851 -11.96307 -11.44282 -11.36963 -11.10599 -9.98403 -9.78085 -8.96692 -8.74964 -7.97259 -6.29040 -0.14402 0.40563 1.28106 1.43985 1.53301 1.60693 2.16961 2.23011 2.75420 3.08235 3.43614 3.59376 3.67642 4.18921 4.31781 4.47178 4.51132 4.73201 4.98931 5.09074 5.10930 5.37579 5.38108 5.62410 5.73151 5.83899 6.10493 6.24387 6.52875 6.71681 6.81439 7.01457 7.27203 7.48629 7.60796 8.22595 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.022512 B = 0.009160 C = 0.006742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.466138 B = 3055.946328 C = 4152.312568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.037 3.963 3 Si 0.979 3.021 4 H -0.257 1.257 5 H -0.270 1.270 6 H -0.261 1.261 7 C -0.460 4.460 8 H 0.094 0.906 9 C 0.076 3.924 10 C 0.053 3.947 11 N -0.838 5.838 12 C 0.271 3.729 13 O -0.493 6.493 14 N -0.592 5.592 15 C 0.136 3.864 16 C -0.167 4.167 17 C 0.120 3.880 18 O -0.504 6.504 19 C -0.190 4.190 20 C -0.052 4.052 21 C -0.169 4.169 22 H 0.294 0.706 23 H 0.386 0.614 24 H 0.391 0.609 25 H 0.396 0.604 26 H 0.124 0.876 27 H 0.407 0.593 28 H 0.147 0.853 29 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.399 0.120 1.052 3.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.182 4.182 3 Si 0.800 3.200 4 H -0.181 1.181 5 H -0.195 1.195 6 H -0.185 1.185 7 C -0.490 4.490 8 H 0.112 0.888 9 C 0.063 3.937 10 C -0.057 4.057 11 N -0.380 5.380 12 C 0.085 3.915 13 O -0.300 6.300 14 N -0.317 5.317 15 C 0.011 3.989 16 C -0.187 4.187 17 C 0.074 3.926 18 O -0.317 6.317 19 C -0.209 4.209 20 C -0.071 4.071 21 C -0.174 4.174 22 H 0.105 0.895 23 H 0.214 0.786 24 H 0.222 0.778 25 H 0.253 0.747 26 H 0.142 0.858 27 H 0.265 0.735 28 H 0.164 0.836 29 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.761 -0.495 0.740 2.900 hybrid contribution 0.115 1.514 -0.104 1.522 sum 2.876 1.019 0.636 3.117 Atomic orbital electron populations 1.69813 1.08897 1.31482 1.31304 1.26653 0.95334 1.03725 0.92443 0.85265 0.78855 0.75552 0.80376 1.18131 1.19493 1.18509 1.19359 0.98504 0.90799 1.40331 0.88776 1.18609 0.93133 0.92327 0.89591 1.18717 1.05413 0.87341 0.94219 1.41385 1.41926 1.12674 1.41997 1.18713 0.95663 0.87701 0.89442 1.84658 1.22225 1.93164 1.29985 1.66710 1.24866 1.29504 1.10595 1.18188 0.94856 0.93308 0.92561 1.21016 1.03885 0.97044 0.96786 1.18127 0.96738 0.86828 0.90915 1.84718 1.57921 1.31375 1.57665 1.21069 1.04320 0.92323 1.03184 1.20730 0.95389 0.97934 0.93073 1.20140 1.03343 0.94648 0.99222 0.89542 0.78619 0.77835 0.74740 0.85767 0.73461 0.83563 0.85010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -35.76 11.28 21.88 0.25 -35.51 15 2 C 0.04 1.60 3.55 85.35 0.30 1.90 15 3 Si 0.98 32.60 29.60 68.60 2.03 34.63 15 4 H -0.26 -8.38 7.11 99.48 0.71 -7.67 15 5 H -0.27 -8.68 7.11 99.48 0.71 -7.98 15 6 H -0.26 -8.60 7.11 99.48 0.71 -7.90 15 7 C -0.46 -21.55 7.82 23.23 0.18 -21.36 15 8 H 0.09 4.19 7.51 -2.91 -0.02 4.17 15 9 C 0.08 3.83 5.47 -19.64 -0.11 3.72 15 10 C 0.05 2.58 6.34 39.40 0.25 2.83 15 11 N -0.84 -35.59 7.67 -49.56 -0.38 -35.97 15 12 C 0.27 13.23 7.71 85.28 0.66 13.89 15 13 O -0.49 -20.40 12.76 -89.84 -1.15 -21.54 15 14 N -0.59 -30.20 10.26 -302.30 -3.10 -33.31 15 15 C 0.14 6.70 6.61 40.11 0.27 6.97 15 16 C -0.17 -7.14 9.95 22.71 0.23 -6.91 15 17 C 0.12 4.44 6.68 22.50 0.15 4.59 15 18 O -0.50 -14.98 13.48 -91.98 -1.24 -16.22 15 19 C -0.19 -6.87 9.91 22.19 0.22 -6.65 15 20 C -0.05 -2.19 9.44 22.18 0.21 -1.98 15 21 C -0.17 -8.24 5.90 -19.86 -0.12 -8.36 15 22 H 0.29 12.08 8.30 -92.71 -0.77 11.31 15 23 H 0.39 14.50 8.19 -92.71 -0.76 13.74 15 24 H 0.39 16.50 6.03 -92.70 -0.56 15.94 15 25 H 0.40 12.69 9.06 -74.05 -0.67 12.02 15 26 H 0.12 5.03 8.06 -2.91 -0.02 5.01 15 27 H 0.41 7.50 9.06 -74.05 -0.67 6.83 15 28 H 0.15 4.27 8.06 -2.91 -0.02 4.25 15 29 H 0.13 5.15 7.08 -2.91 -0.02 5.12 15 Total: -1.00 -61.70 257.10 -2.75 -64.45 By element: Atomic # 1 Polarization: 56.24 SS G_CDS: -1.40 Total: 54.85 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: 2.24 Total: -11.37 kcal Atomic # 7 Polarization: -101.55 SS G_CDS: -3.23 Total: -104.79 kcal Atomic # 8 Polarization: -35.37 SS G_CDS: -2.39 Total: -37.76 kcal Atomic # 14 Polarization: 32.60 SS G_CDS: 2.03 Total: 34.63 kcal Total: -61.70 -2.75 -64.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260616035.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.389 kcal (2) G-P(sol) polarization free energy of solvation -61.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds