Wall clock time and date at job start Mon Mar 30 2020 03:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99667 * 2 1 4 4 H 1.48498 * 109.47289 * 269.99395 * 3 2 1 5 5 H 1.48495 * 109.47247 * 29.99848 * 3 2 1 6 6 H 1.48503 * 109.46886 * 149.99951 * 3 2 1 7 7 C 1.37874 * 120.00250 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00038 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99836 * 359.97438 * 7 2 1 10 10 C 1.50700 * 109.47060 * 179.97438 * 9 7 2 11 11 N 1.31764 * 120.75440 * 90.00370 * 10 9 7 12 12 C 1.32967 * 121.59794 * 180.02562 * 11 10 9 13 13 O 1.35435 * 118.66786 * 179.97438 * 12 11 10 14 14 N 1.31712 * 122.66659 * 0.25512 * 12 11 10 15 15 C 1.33959 * 120.19717 * 359.49250 * 14 12 11 16 16 C 1.40052 * 121.89703 * 180.21785 * 15 14 12 17 17 C 1.37772 * 119.45914 * 180.27059 * 16 15 14 18 18 O 1.35781 * 119.59869 * 179.97438 * 17 16 15 19 19 C 1.39911 * 120.80427 * 359.97438 * 17 16 15 20 20 C 1.36036 * 120.89608 * 0.04578 * 19 17 16 21 21 C 1.40361 * 119.71112 * 359.95181 * 20 19 17 22 22 H 0.97003 * 120.00180 * 0.02562 * 1 2 3 23 23 H 1.09007 * 109.46796 * 60.00203 * 9 7 2 24 24 H 1.08996 * 109.47281 * 300.00404 * 9 7 2 25 25 H 0.96700 * 114.00319 * 89.99874 * 13 12 11 26 26 H 1.08002 * 120.27068 * 0.25021 * 16 15 14 27 27 H 0.96705 * 113.99876 * 90.00577 * 18 17 16 28 28 H 1.07996 * 119.55251 * 180.02562 * 19 17 16 29 29 H 1.07993 * 120.14145 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2304 -3.6445 0.0015 11 7 2.6691 -4.1562 1.1337 12 6 3.5335 -5.1664 1.1530 13 8 3.9455 -5.6460 2.3507 14 7 4.0094 -5.7159 0.0547 15 6 3.6192 -5.2686 -1.1462 16 6 4.0988 -5.8296 -2.3364 17 6 3.6680 -5.3264 -3.5445 18 8 4.1316 -5.8678 -4.7002 19 6 2.7585 -4.2644 -3.5949 20 6 2.2778 -3.7017 -2.4535 21 6 2.6969 -4.1911 -1.2065 22 1 -0.4850 0.8401 -0.0004 23 1 0.6241 -2.5574 -0.8881 24 1 0.6247 -2.5562 0.8919 25 1 3.3940 -6.3597 2.6995 26 1 4.8010 -6.6497 -2.3076 27 1 3.5948 -6.5992 -5.0350 28 1 2.4339 -3.8861 -4.5529 29 1 1.5765 -2.8822 -2.5066 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260677939.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:05 Heat of formation + Delta-G solvation = -47.603824 kcal Electronic energy + Delta-G solvation = -16948.442765 eV Core-core repulsion = 14029.032451 eV Total energy + Delta-G solvation = -2919.410314 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.48068 -40.08316 -38.57875 -36.65603 -36.15000 -34.65297 -31.80726 -31.18349 -29.85316 -26.22870 -25.02093 -24.46508 -22.46579 -20.68401 -19.77857 -18.92908 -18.63297 -17.86606 -17.37031 -16.63380 -16.58130 -15.93793 -15.23761 -15.12366 -14.63686 -14.32608 -13.98792 -13.58420 -13.47888 -13.06315 -12.92114 -12.64613 -12.60754 -12.26292 -12.16225 -12.08027 -11.55303 -11.35827 -10.63192 -10.13936 -9.94880 -9.36823 -8.26914 -6.38760 -0.85762 -0.42508 0.79039 1.40745 1.42694 1.53023 1.73161 2.09376 2.38353 2.88276 2.95144 3.07777 3.28447 3.43621 3.68276 3.94782 4.10134 4.17545 4.57361 4.63762 4.89819 5.05391 5.15916 5.20145 5.25459 5.36659 5.56461 5.64078 5.95160 6.01083 6.55010 6.66972 6.80170 7.02619 7.29164 8.83371 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.019057 B = 0.007892 C = 0.006103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.900452 B = 3547.259505 C = 4586.553611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.024 3.976 3 Si 0.961 3.039 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.529 4.529 8 H 0.043 0.957 9 C 0.066 3.934 10 C 0.276 3.724 11 N -0.575 5.575 12 C 0.495 3.505 13 O -0.465 6.465 14 N -0.549 5.549 15 C 0.178 3.822 16 C -0.158 4.158 17 C 0.178 3.822 18 O -0.495 6.495 19 C -0.148 4.148 20 C -0.038 4.038 21 C -0.199 4.199 22 H 0.270 0.730 23 H 0.053 0.947 24 H 0.023 0.977 25 H 0.428 0.572 26 H 0.157 0.843 27 H 0.422 0.578 28 H 0.169 0.831 29 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.171 -11.551 -8.494 14.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.177 4.177 3 Si 0.785 3.215 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.204 1.204 7 C -0.567 4.567 8 H 0.061 0.939 9 C 0.028 3.972 10 C 0.120 3.880 11 N -0.301 5.301 12 C 0.189 3.811 13 O -0.272 6.272 14 N -0.277 5.277 15 C 0.051 3.949 16 C -0.177 4.177 17 C 0.130 3.870 18 O -0.310 6.310 19 C -0.167 4.167 20 C -0.058 4.058 21 C -0.204 4.204 22 H 0.080 0.920 23 H 0.071 0.929 24 H 0.041 0.959 25 H 0.291 0.709 26 H 0.174 0.826 27 H 0.284 0.716 28 H 0.187 0.813 29 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.317 -11.171 -7.526 14.145 hybrid contribution -0.594 0.484 0.000 0.766 sum 3.723 -10.687 -7.526 13.591 Atomic orbital electron populations 1.70008 1.07139 1.28380 1.49866 1.25650 0.95710 1.02266 0.94025 0.85515 0.78268 0.78796 0.78906 1.18861 1.20191 1.20350 1.20924 0.92447 0.90404 1.52971 0.93870 1.18275 0.91988 0.88130 0.98785 1.22794 0.89245 0.89822 0.86121 1.67711 1.15601 1.13950 1.32850 1.20416 0.86944 0.87737 0.85954 1.84624 1.55287 1.57463 1.29794 1.68257 1.28622 1.32761 0.98066 1.18761 0.92444 0.91808 0.91859 1.21133 1.04220 1.03520 0.88841 1.18378 0.91035 0.92320 0.85310 1.84718 1.55186 1.54612 1.36435 1.21509 0.97715 0.97479 0.99953 1.21144 0.97343 0.97400 0.89906 1.19639 1.03359 1.00685 0.96676 0.92041 0.92926 0.95872 0.70938 0.82584 0.71608 0.81341 0.83558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.11 13.29 21.45 0.28 -50.82 15 2 C 0.02 1.29 5.46 84.65 0.46 1.75 15 3 Si 0.96 42.78 29.54 68.60 2.03 44.80 15 4 H -0.26 -11.10 7.11 99.48 0.71 -10.39 15 5 H -0.28 -11.95 7.11 99.48 0.71 -11.24 15 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 15 7 C -0.53 -28.98 9.09 25.60 0.23 -28.75 15 8 H 0.04 2.44 7.74 -2.91 -0.02 2.42 15 9 C 0.07 3.32 4.88 29.10 0.14 3.46 15 10 C 0.28 12.63 6.08 43.13 0.26 12.89 15 11 N -0.58 -26.49 10.36 -299.98 -3.11 -29.59 15 12 C 0.49 20.12 8.66 180.55 1.56 21.69 15 13 O -0.47 -15.64 13.64 -87.31 -1.19 -16.83 15 14 N -0.55 -21.35 10.48 -307.52 -3.22 -24.57 15 15 C 0.18 6.52 6.61 40.18 0.27 6.78 15 16 C -0.16 -4.47 9.97 22.60 0.23 -4.24 15 17 C 0.18 4.20 6.69 22.56 0.15 4.35 15 18 O -0.49 -8.45 13.47 -91.10 -1.23 -9.68 15 19 C -0.15 -3.68 9.89 22.16 0.22 -3.46 15 20 C -0.04 -1.23 9.31 22.27 0.21 -1.02 15 21 C -0.20 -7.81 5.74 -21.27 -0.12 -7.93 15 22 H 0.27 14.15 8.31 -92.71 -0.77 13.38 15 23 H 0.05 2.56 6.54 -2.38 -0.02 2.54 15 24 H 0.02 1.27 8.14 -2.39 -0.02 1.25 15 25 H 0.43 9.01 9.06 -74.06 -0.67 8.34 15 26 H 0.16 3.85 8.06 -2.91 -0.02 3.83 15 27 H 0.42 2.40 9.06 -74.05 -0.67 1.73 15 28 H 0.17 3.06 8.06 -2.91 -0.02 3.03 15 29 H 0.15 4.98 6.49 -2.91 -0.02 4.96 15 Total: -1.00 -70.25 265.93 -2.94 -73.19 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -0.12 Total: 7.98 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: 3.61 Total: 5.52 kcal Atomic # 7 Polarization: -98.94 SS G_CDS: -6.04 Total: -104.99 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -2.42 Total: -26.50 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -70.25 -2.94 -73.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260677939.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.587 kcal (2) G-P(sol) polarization free energy of solvation -70.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds