Wall clock time and date at job start Mon Mar 30 2020 03:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30852 * 1 3 3 Si 1.86802 * 120.00379 * 2 1 4 4 H 1.48494 * 109.46989 * 85.18415 * 3 2 1 5 5 H 1.48497 * 109.47249 * 205.18800 * 3 2 1 6 6 H 1.48498 * 109.46673 * 325.18374 * 3 2 1 7 7 C 1.39964 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99854 * 196.98075 * 7 2 1 9 9 C 1.41169 * 119.99632 * 16.98458 * 7 2 1 10 10 C 1.40917 * 121.08729 * 23.85927 * 9 7 2 11 11 N 1.32024 * 118.83345 * 179.72024 * 10 9 7 12 12 C 1.32042 * 121.25097 * 0.56539 * 11 10 9 13 13 C 1.50701 * 118.77097 * 179.72490 * 12 11 10 14 14 C 1.50706 * 109.46996 * 269.98168 * 13 12 11 15 15 C 1.34510 * 125.78877 * 89.99885 * 14 13 12 16 16 C 1.41380 * 106.84164 * 179.97438 * 15 14 13 17 17 C 1.34523 * 106.83950 * 0.02562 * 16 15 14 18 18 O 1.34301 * 125.78699 * 269.69152 * 14 13 12 19 19 N 1.31874 * 122.45969 * 359.70612 * 12 11 10 20 20 C 1.32564 * 120.98744 * 359.97438 * 19 12 11 21 21 O 1.35273 * 120.68114 * 180.02562 * 20 19 12 22 22 H 0.96998 * 119.99862 * 359.97438 * 1 2 3 23 23 H 1.07994 * 120.58214 * 359.97438 * 10 9 7 24 24 H 1.08992 * 109.46958 * 29.98488 * 13 12 11 25 25 H 1.08997 * 109.46745 * 149.98140 * 13 12 11 26 26 H 1.07998 * 126.57700 * 359.96962 * 15 14 13 27 27 H 1.07999 * 126.58449 * 179.97438 * 16 15 14 28 28 H 1.07995 * 125.78622 * 180.02562 * 17 16 15 29 29 H 0.96705 * 114.00148 * 269.97436 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.3883 2.1051 1.3951 5 1 3.5873 1.4128 -0.5958 6 1 1.4947 2.6211 -0.7994 7 6 2.0083 -1.2121 0.0005 8 1 3.0530 -1.2324 0.2737 9 6 1.3485 -2.4081 -0.3561 10 6 0.1970 -2.3896 -1.1682 11 7 -0.3814 -3.5350 -1.4790 12 6 0.0928 -4.6845 -1.0349 13 6 -0.6152 -5.9582 -1.4192 14 6 -1.6715 -6.2752 -0.3921 15 6 -2.9515 -5.8633 -0.4271 16 6 -3.5824 -6.3881 0.7242 17 6 -2.6499 -7.0888 1.3943 18 8 -1.4959 -7.0218 0.7104 19 7 1.1629 -4.7598 -0.2680 20 6 1.8200 -3.6676 0.0960 21 8 2.9174 -3.7520 0.8824 22 1 -0.4850 0.8400 0.0004 23 1 -0.2028 -1.4552 -1.5333 24 1 -1.0835 -5.8331 -2.3954 25 1 0.1051 -6.7750 -1.4637 26 1 -3.4094 -5.2494 -1.1886 27 1 -4.6146 -6.2517 1.0112 28 1 -2.8045 -7.6198 2.3219 29 1 2.7268 -3.7089 1.8296 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260698828.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:42 Heat of formation + Delta-G solvation = 4.811267 kcal Electronic energy + Delta-G solvation = -16941.771869 eV Core-core repulsion = 14024.634444 eV Total energy + Delta-G solvation = -2917.137425 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.08711 -39.32560 -36.23083 -34.58319 -32.78965 -32.07206 -31.33777 -29.76699 -27.04329 -24.66626 -22.58852 -21.54229 -21.26436 -19.97477 -17.76249 -17.49670 -16.80362 -16.47575 -15.65220 -15.17892 -14.59810 -14.29398 -13.64000 -13.23968 -12.75905 -12.45966 -12.36481 -12.29395 -12.04072 -11.87953 -11.45793 -11.23788 -11.12374 -10.80340 -10.60153 -9.69359 -9.49602 -9.22435 -9.07173 -8.11361 -7.94681 -7.78531 -7.15798 -4.71803 2.11798 2.35413 2.61323 2.89939 2.92110 2.98813 3.07372 3.47793 3.67330 4.34832 4.81421 5.13316 5.37114 5.38103 5.45084 5.61617 5.82463 6.16161 6.22285 6.25493 6.42099 6.48429 6.58243 6.77534 6.78808 6.94778 7.27444 7.56650 7.61957 7.99927 8.06394 8.32871 8.73848 8.77501 9.67941 9.75911 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.032374 B = 0.006133 C = 0.005711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.689991 B = 4564.070170 C = 4901.957009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.070 3.930 3 Si 0.922 3.078 4 H -0.266 1.266 5 H -0.256 1.256 6 H -0.271 1.271 7 C -0.417 4.417 8 H 0.094 0.906 9 C 0.010 3.990 10 C 0.082 3.918 11 N -0.496 5.496 12 C 0.167 3.833 13 C 0.053 3.947 14 C 0.018 3.982 15 C -0.213 4.213 16 C -0.215 4.215 17 C -0.060 4.060 18 O -0.172 6.172 19 N -0.501 5.501 20 C 0.202 3.798 21 O -0.476 6.476 22 H 0.291 0.709 23 H 0.163 0.837 24 H 0.103 0.897 25 H 0.087 0.913 26 H 0.146 0.854 27 H 0.142 0.858 28 H 0.196 0.804 29 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.694 -3.948 1.045 5.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.151 4.151 3 Si 0.745 3.255 4 H -0.191 1.191 5 H -0.179 1.179 6 H -0.196 1.196 7 C -0.447 4.447 8 H 0.112 0.888 9 C 0.002 3.998 10 C -0.091 4.091 11 N -0.209 5.209 12 C -0.095 4.095 13 C 0.014 3.986 14 C -0.033 4.033 15 C -0.232 4.232 16 C -0.234 4.234 17 C -0.127 4.127 18 O -0.068 6.068 19 N -0.224 5.224 20 C 0.013 3.987 21 O -0.280 6.280 22 H 0.102 0.898 23 H 0.180 0.820 24 H 0.122 0.878 25 H 0.106 0.894 26 H 0.164 0.836 27 H 0.160 0.840 28 H 0.212 0.788 29 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -3.747 -4.853 0.367 6.143 hybrid contribution 0.237 1.771 1.031 2.063 sum -3.511 -3.083 1.398 4.877 Atomic orbital electron populations 1.69745 1.07880 1.30646 1.31769 1.26164 0.94921 1.02230 0.91796 0.86054 0.80728 0.79270 0.79484 1.19128 1.17944 1.19556 1.19597 0.98351 0.90103 1.36621 0.88812 1.19328 0.94077 0.93280 0.93106 1.23296 0.95195 0.94736 0.95824 1.67535 1.31963 0.98801 1.22634 1.21040 0.93334 0.92134 1.02981 1.18391 0.93135 0.93581 0.93525 1.22527 0.96091 0.95853 0.88812 1.21540 0.94083 1.06215 1.01391 1.21767 1.00676 1.03526 0.97417 1.23874 0.83705 1.05754 0.99397 1.84044 1.35053 1.56803 1.30909 1.66889 1.07382 1.34752 1.13401 1.19228 0.91723 0.88018 0.99773 1.84626 1.28148 1.95477 1.19705 0.89769 0.81986 0.87834 0.89421 0.83584 0.84027 0.78769 0.77356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.33 10.93 55.55 0.61 -17.72 15 2 C 0.07 1.60 5.20 -17.32 -0.09 1.51 15 3 Si 0.92 17.00 29.59 -169.99 -5.03 11.97 15 4 H -0.27 -4.85 7.11 56.52 0.40 -4.45 15 5 H -0.26 -4.74 7.11 56.52 0.40 -4.34 15 6 H -0.27 -4.86 7.11 56.52 0.40 -4.46 15 7 C -0.42 -10.34 8.80 -37.82 -0.33 -10.68 15 8 H 0.09 2.26 7.72 -52.49 -0.41 1.86 15 9 C 0.01 0.27 5.61 -106.38 -0.60 -0.32 15 10 C 0.08 2.12 10.00 -16.46 -0.16 1.96 15 11 N -0.50 -12.37 10.29 -10.14 -0.10 -12.48 15 12 C 0.17 4.02 6.88 -156.91 -1.08 2.94 15 13 C 0.05 1.02 6.17 -29.03 -0.18 0.84 15 14 C 0.02 0.35 6.56 -35.62 -0.23 0.12 15 15 C -0.21 -3.80 10.81 -39.70 -0.43 -4.22 15 16 C -0.21 -3.36 10.91 -39.70 -0.43 -3.79 15 17 C -0.06 -0.91 12.09 29.42 0.36 -0.56 15 18 O -0.17 -3.25 10.65 5.71 0.06 -3.19 15 19 N -0.50 -12.77 10.33 -10.17 -0.11 -12.88 15 20 C 0.20 5.21 7.88 -15.85 -0.12 5.08 15 21 O -0.48 -10.95 12.98 -17.51 -0.23 -11.18 15 22 H 0.29 6.15 8.30 -40.82 -0.34 5.81 15 23 H 0.16 4.15 6.21 -52.49 -0.33 3.82 15 24 H 0.10 1.75 8.14 -51.93 -0.42 1.33 15 25 H 0.09 1.57 8.14 -51.93 -0.42 1.15 15 26 H 0.15 2.44 8.06 -52.49 -0.42 2.02 15 27 H 0.14 1.80 8.06 -52.49 -0.42 1.37 15 28 H 0.20 2.11 8.06 -52.49 -0.42 1.68 15 29 H 0.37 6.91 9.06 45.56 0.41 7.32 15 LS Contribution 268.72 15.07 4.05 4.05 Total: -1.00 -29.81 268.72 -5.62 -35.43 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -1.57 Total: 13.11 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -3.31 Total: -7.13 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 0.40 Total: -43.07 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.17 Total: -14.37 kcal Atomic # 14 Polarization: 17.00 SS G_CDS: -5.03 Total: 11.97 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.81 -5.62 -35.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260698828.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.243 kcal (2) G-P(sol) polarization free energy of solvation -29.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds