Wall clock time and date at job start Mon Mar 30 2020 03:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30852 * 1 3 3 Si 1.86802 * 120.00379 * 2 1 4 4 H 1.48494 * 109.46989 * 85.18415 * 3 2 1 5 5 H 1.48497 * 109.47249 * 205.18800 * 3 2 1 6 6 H 1.48498 * 109.46673 * 325.18374 * 3 2 1 7 7 C 1.39964 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99854 * 196.98075 * 7 2 1 9 9 C 1.41169 * 119.99632 * 16.98458 * 7 2 1 10 10 C 1.40917 * 121.08729 * 23.85927 * 9 7 2 11 11 N 1.32024 * 118.83345 * 179.72024 * 10 9 7 12 12 C 1.32042 * 121.25097 * 0.56539 * 11 10 9 13 13 C 1.50701 * 118.77097 * 179.72490 * 12 11 10 14 14 C 1.50706 * 109.46996 * 269.98168 * 13 12 11 15 15 C 1.34510 * 125.78877 * 89.99885 * 14 13 12 16 16 C 1.41380 * 106.84164 * 179.97438 * 15 14 13 17 17 C 1.34523 * 106.83950 * 0.02562 * 16 15 14 18 18 O 1.34301 * 125.78699 * 269.69152 * 14 13 12 19 19 N 1.31874 * 122.45969 * 359.70612 * 12 11 10 20 20 C 1.32564 * 120.98744 * 359.97438 * 19 12 11 21 21 O 1.35273 * 120.68114 * 180.02562 * 20 19 12 22 22 H 0.96998 * 119.99862 * 359.97438 * 1 2 3 23 23 H 1.07994 * 120.58214 * 359.97438 * 10 9 7 24 24 H 1.08992 * 109.46958 * 29.98488 * 13 12 11 25 25 H 1.08997 * 109.46745 * 149.98140 * 13 12 11 26 26 H 1.07998 * 126.57700 * 359.96962 * 15 14 13 27 27 H 1.07999 * 126.58449 * 179.97438 * 16 15 14 28 28 H 1.07995 * 125.78622 * 180.02562 * 17 16 15 29 29 H 0.96705 * 114.00148 * 269.97436 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.3883 2.1051 1.3951 5 1 3.5873 1.4128 -0.5958 6 1 1.4947 2.6211 -0.7994 7 6 2.0083 -1.2121 0.0005 8 1 3.0530 -1.2324 0.2737 9 6 1.3485 -2.4081 -0.3561 10 6 0.1970 -2.3896 -1.1682 11 7 -0.3814 -3.5350 -1.4790 12 6 0.0928 -4.6845 -1.0349 13 6 -0.6152 -5.9582 -1.4192 14 6 -1.6715 -6.2752 -0.3921 15 6 -2.9515 -5.8633 -0.4271 16 6 -3.5824 -6.3881 0.7242 17 6 -2.6499 -7.0888 1.3943 18 8 -1.4959 -7.0218 0.7104 19 7 1.1629 -4.7598 -0.2680 20 6 1.8200 -3.6676 0.0960 21 8 2.9174 -3.7520 0.8824 22 1 -0.4850 0.8400 0.0004 23 1 -0.2028 -1.4552 -1.5333 24 1 -1.0835 -5.8331 -2.3954 25 1 0.1051 -6.7750 -1.4637 26 1 -3.4094 -5.2494 -1.1886 27 1 -4.6146 -6.2517 1.0112 28 1 -2.8045 -7.6198 2.3219 29 1 2.7268 -3.7089 1.8296 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260698828.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:42 Heat of formation + Delta-G solvation = -17.130060 kcal Electronic energy + Delta-G solvation = -16942.723317 eV Core-core repulsion = 14024.634444 eV Total energy + Delta-G solvation = -2918.088873 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.41041 -41.20782 -38.06958 -36.39117 -34.26253 -33.62658 -33.12978 -31.51400 -28.59484 -26.37615 -24.51173 -23.32493 -22.56969 -21.36210 -19.62035 -19.26851 -18.38012 -18.10086 -17.13432 -16.92912 -16.32099 -15.71148 -15.31974 -14.96186 -14.42688 -14.14107 -13.75609 -13.67285 -13.64037 -13.43837 -13.16961 -12.88776 -12.67343 -12.48112 -12.13844 -11.39852 -11.10809 -11.00689 -10.78579 -9.97470 -9.71852 -9.32474 -8.91661 -6.60597 0.44873 0.64669 0.89321 1.38785 1.47564 1.56471 1.76013 2.13011 2.19032 2.58815 3.01914 3.46585 3.69404 3.98113 4.10405 4.20999 4.29698 4.58032 4.64788 4.75726 4.85914 4.97716 5.00755 5.09512 5.24321 5.44242 5.64940 5.72319 6.12676 6.18026 6.29848 6.48316 6.81068 6.99370 7.76149 8.04060 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.032374 B = 0.006133 C = 0.005711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.689991 B = 4564.070170 C = 4901.957009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.037 3.963 3 Si 0.997 3.003 4 H -0.258 1.258 5 H -0.257 1.257 6 H -0.260 1.260 7 C -0.437 4.437 8 H 0.094 0.906 9 C -0.015 4.015 10 C 0.064 3.936 11 N -0.501 5.501 12 C 0.159 3.841 13 C 0.057 3.943 14 C -0.014 4.014 15 C -0.218 4.218 16 C -0.225 4.225 17 C -0.052 4.052 18 O -0.194 6.194 19 N -0.515 5.515 20 C 0.185 3.815 21 O -0.479 6.479 22 H 0.303 0.697 23 H 0.159 0.841 24 H 0.122 0.878 25 H 0.096 0.904 26 H 0.150 0.850 27 H 0.172 0.828 28 H 0.239 0.761 29 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.205 -3.436 1.794 5.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.183 4.183 3 Si 0.816 3.184 4 H -0.182 1.182 5 H -0.181 1.181 6 H -0.183 1.183 7 C -0.466 4.466 8 H 0.112 0.888 9 C -0.023 4.023 10 C -0.108 4.108 11 N -0.214 5.214 12 C -0.103 4.103 13 C 0.018 3.982 14 C -0.065 4.065 15 C -0.237 4.237 16 C -0.244 4.244 17 C -0.119 4.119 18 O -0.091 6.091 19 N -0.238 5.238 20 C -0.005 4.005 21 O -0.284 6.284 22 H 0.115 0.885 23 H 0.176 0.824 24 H 0.140 0.860 25 H 0.114 0.886 26 H 0.168 0.832 27 H 0.190 0.810 28 H 0.255 0.745 29 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -4.275 -4.355 1.124 6.205 hybrid contribution 0.322 1.569 0.870 1.823 sum -3.953 -2.786 1.994 5.232 Atomic orbital electron populations 1.69757 1.09314 1.32392 1.30954 1.27034 0.95583 1.05129 0.90511 0.84943 0.79028 0.74537 0.79874 1.18200 1.18099 1.18349 1.19821 0.98493 0.90845 1.37405 0.88816 1.19603 0.94692 0.94149 0.93866 1.23294 0.95852 0.95043 0.96640 1.67573 1.32021 0.98988 1.22866 1.21906 0.93072 0.93385 1.01986 1.18439 0.93454 0.91612 0.94680 1.22452 0.96489 0.97885 0.89679 1.21832 0.94001 1.05642 1.02217 1.22158 1.02264 1.03364 0.96616 1.24819 0.82389 1.04721 0.99928 1.84024 1.36784 1.57122 1.31167 1.67008 1.08072 1.34694 1.14065 1.19480 0.92272 0.88273 1.00461 1.84551 1.27482 1.95422 1.20976 0.88543 0.82422 0.85961 0.88583 0.83175 0.81044 0.74482 0.75275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.54 10.93 21.83 0.24 -37.30 15 2 C 0.04 1.65 5.20 85.26 0.44 2.09 15 3 Si 1.00 33.74 29.59 68.60 2.03 35.77 15 4 H -0.26 -8.35 7.11 99.48 0.71 -7.64 15 5 H -0.26 -8.72 7.11 99.48 0.71 -8.02 15 6 H -0.26 -8.26 7.11 99.48 0.71 -7.56 15 7 C -0.44 -21.82 8.80 23.41 0.21 -21.61 15 8 H 0.09 4.54 7.72 -2.91 -0.02 4.52 15 9 C -0.01 -0.79 5.61 -21.00 -0.12 -0.91 15 10 C 0.06 3.38 10.00 85.32 0.85 4.24 15 11 N -0.50 -25.41 10.29 -185.98 -1.91 -27.33 15 12 C 0.16 7.72 6.88 138.65 0.95 8.67 15 13 C 0.06 2.19 6.17 29.10 0.18 2.37 15 14 C -0.01 -0.54 6.56 24.83 0.16 -0.38 15 15 C -0.22 -7.54 10.81 22.19 0.24 -7.30 15 16 C -0.23 -6.52 10.91 22.19 0.24 -6.28 15 17 C -0.05 -1.46 12.09 66.97 0.81 -0.65 15 18 O -0.19 -7.12 10.65 -2.48 -0.03 -7.15 15 19 N -0.52 -26.59 10.33 -299.03 -3.09 -29.68 15 20 C 0.18 9.68 7.88 85.48 0.67 10.35 15 21 O -0.48 -22.17 12.98 -85.58 -1.11 -23.28 15 22 H 0.30 12.53 8.30 -92.71 -0.77 11.76 15 23 H 0.16 8.29 6.21 -2.91 -0.02 8.27 15 24 H 0.12 4.11 8.14 -2.39 -0.02 4.09 15 25 H 0.10 3.45 8.14 -2.39 -0.02 3.43 15 26 H 0.15 4.92 8.06 -2.91 -0.02 4.90 15 27 H 0.17 3.79 8.06 -2.91 -0.02 3.77 15 28 H 0.24 4.22 8.06 -2.91 -0.02 4.20 15 29 H 0.39 14.51 9.06 -74.05 -0.67 13.84 15 Total: -1.00 -64.11 268.72 1.31 -62.81 By element: Atomic # 1 Polarization: 35.04 SS G_CDS: 0.53 Total: 35.57 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: 4.64 Total: -9.40 kcal Atomic # 7 Polarization: -89.55 SS G_CDS: -4.76 Total: -94.31 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -1.14 Total: -30.43 kcal Atomic # 14 Polarization: 33.74 SS G_CDS: 2.03 Total: 35.77 kcal Total: -64.11 1.31 -62.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260698828.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.678 kcal (2) G-P(sol) polarization free energy of solvation -64.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds