Wall clock time and date at job start Mon Mar 30 2020 03:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48494 * 109.47225 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00450 * 3 2 1 6 6 H 1.48498 * 109.47306 * 239.99734 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 11 11 N 1.46901 * 109.46649 * 300.00162 * 9 7 2 12 12 C 1.50698 * 109.47465 * 180.02562 * 9 7 2 13 13 C 1.34290 * 126.43101 * 259.70887 * 12 9 7 14 14 N 1.34519 * 107.68330 * 179.83913 * 13 12 9 15 15 C 1.30358 * 108.68897 * 0.43377 * 14 13 12 16 16 Br 1.89103 * 125.63254 * 179.75294 * 15 14 13 17 17 O 1.34004 * 108.73625 * 359.73213 * 15 14 13 18 18 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 19 19 H 1.00908 * 111.00077 * 176.04260 * 11 9 7 20 20 H 1.00905 * 111.00224 * 299.99389 * 11 9 7 21 21 H 1.07998 * 126.15708 * 0.02562 * 13 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6966 -1.2124 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 1 0.6241 -2.5613 -0.8770 11 7 0.4071 -2.5710 1.2125 12 6 2.2305 -3.6445 0.0182 13 6 2.6021 -4.3815 -1.0411 14 7 3.4913 -5.2950 -0.6117 15 6 3.6621 -5.1406 0.6714 16 35 4.8059 -6.1778 1.7632 17 8 2.8936 -4.1253 1.0889 18 1 -0.4850 -0.8401 -0.0004 19 1 -0.1569 -3.4077 1.2083 20 1 0.9655 -2.5154 2.0511 21 1 2.2524 -4.2605 -2.0557 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260704188.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:10 Heat of formation + Delta-G solvation = 25.482280 kcal Electronic energy + Delta-G solvation = -10781.828459 eV Core-core repulsion = 8512.893766 eV Total energy + Delta-G solvation = -2268.934693 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 245.974 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.90787 -35.30315 -34.42008 -32.12528 -31.37494 -28.79281 -25.66642 -22.79478 -22.21106 -20.55965 -17.44518 -16.86139 -16.19504 -14.95020 -14.55255 -14.00253 -13.69753 -12.94079 -12.53086 -11.88957 -11.51360 -10.95761 -10.82618 -10.81159 -10.71750 -10.45864 -10.12570 -9.15349 -8.52758 -8.15549 -7.86348 -6.39485 -4.25856 0.68575 1.74913 2.97036 3.41134 3.42114 3.49088 3.61300 4.47036 5.22107 5.25447 5.47946 5.78096 5.81437 6.21552 6.53441 6.77929 7.59027 7.82015 8.02672 8.36572 8.47586 8.81085 9.56788 11.00693 Molecular weight = 245.97amu Principal moments of inertia in cm(-1) A = 0.048053 B = 0.006704 C = 0.006415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.548296 B = 4175.785208 C = 4363.504049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.044 3.956 3 Si 1.068 2.932 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.620 4.620 8 H 0.050 0.950 9 C 0.282 3.718 10 H 0.070 0.930 11 N -0.826 5.826 12 C 0.017 3.983 13 C -0.077 4.077 14 N -0.434 5.434 15 C 0.128 3.872 16 Br 0.098 6.902 17 O -0.182 6.182 18 H 0.290 0.710 19 H 0.307 0.693 20 H 0.335 0.665 21 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.104 -11.227 3.246 13.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.167 4.167 3 Si 0.896 3.104 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.658 4.658 8 H 0.069 0.931 9 C 0.171 3.829 10 H 0.088 0.912 11 N -0.353 5.353 12 C -0.041 4.041 13 C -0.218 4.218 14 N -0.167 5.167 15 C -0.155 4.155 16 Br 0.178 6.822 17 O -0.067 6.067 18 H 0.102 0.898 19 H 0.118 0.882 20 H 0.148 0.852 21 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 7.250 -9.724 3.093 12.517 hybrid contribution 0.370 -1.963 0.353 2.028 sum 7.620 -11.687 3.446 14.370 Atomic orbital electron populations 1.70593 1.06770 1.32788 1.41226 1.25705 0.96478 1.01945 0.92584 0.83572 0.74937 0.75274 0.76620 1.20579 1.21425 1.21396 1.21622 0.93715 0.89866 1.60618 0.93132 1.18419 0.85500 0.87085 0.91853 0.91221 1.59316 1.28210 1.42405 1.05397 1.26443 0.96163 0.97693 0.83829 1.23093 1.01107 0.96331 1.01300 1.70402 1.15346 1.23406 1.07523 1.27119 1.01746 0.95074 0.91518 1.96801 1.57511 1.63826 1.64027 1.84509 1.44982 1.38988 1.38247 0.89793 0.88158 0.85161 0.79655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.31 13.50 55.43 0.75 -24.56 14 2 C 0.04 1.20 5.39 -17.82 -0.10 1.10 14 3 Si 1.07 24.41 29.90 -169.99 -5.08 19.32 14 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 14 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 14 6 H -0.29 -6.31 7.11 56.52 0.40 -5.91 14 7 C -0.62 -16.69 8.71 -34.44 -0.30 -16.99 14 8 H 0.05 1.41 7.74 -52.49 -0.41 1.00 14 9 C 0.28 6.64 2.70 -70.02 -0.19 6.45 14 10 H 0.07 1.68 8.00 -51.93 -0.42 1.26 14 11 N -0.83 -18.19 7.79 -6.65 -0.05 -18.25 14 12 C 0.02 0.36 6.12 -35.70 -0.22 0.15 14 13 C -0.08 -1.55 11.80 -17.77 -0.21 -1.76 14 14 N -0.43 -8.61 11.30 -13.34 -0.15 -8.76 14 15 C 0.13 2.43 8.90 52.14 0.46 2.89 14 16 Br 0.10 1.37 34.13 -68.01 -2.32 -0.95 14 17 O -0.18 -3.81 10.70 5.11 0.05 -3.76 14 18 H 0.29 8.23 6.40 -40.82 -0.26 7.97 14 19 H 0.31 5.88 9.06 -39.29 -0.36 5.53 14 20 H 0.34 7.38 8.91 -39.29 -0.35 7.03 14 21 H 0.19 3.22 8.06 -52.49 -0.42 2.80 14 LS Contribution 220.43 15.07 3.32 3.32 Total: -1.00 -29.07 220.43 -5.04 -34.11 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -1.01 Total: 7.68 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -0.55 Total: -8.17 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: 0.55 Total: -51.56 kcal Atomic # 8 Polarization: -3.81 SS G_CDS: 0.05 Total: -3.76 kcal Atomic # 14 Polarization: 24.41 SS G_CDS: -5.08 Total: 19.32 kcal Atomic # 35 Polarization: 1.37 SS G_CDS: -2.32 Total: -0.95 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -29.07 -5.04 -34.11 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260704188.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.595 kcal (2) G-P(sol) polarization free energy of solvation -29.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds