Wall clock time and date at job start Mon Mar 30 2020 03:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31588 * 1 3 3 Si 1.86800 * 119.99870 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00149 * 3 2 1 5 5 H 1.48499 * 109.47026 * 209.99997 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00032 * 3 2 1 7 7 C 1.38628 * 119.99638 * 180.27817 * 2 1 3 8 8 H 1.08004 * 119.99580 * 179.72377 * 7 2 1 9 9 O 1.34794 * 120.00311 * 359.72340 * 7 2 1 10 10 C 1.35994 * 116.99752 * 180.02562 * 9 7 2 11 11 C 1.40341 * 126.09127 * 359.68620 * 10 9 7 12 12 N 1.30832 * 108.36166 * 179.82082 * 11 10 9 13 13 N 1.40072 * 108.40339 * 0.44221 * 12 11 10 14 14 C 1.40152 * 126.05496 * 179.74077 * 13 12 11 15 15 C 1.38899 * 120.03289 * 184.97269 * 14 13 12 16 16 C 1.38133 * 120.03961 * 179.97438 * 15 14 13 17 17 C 1.38216 * 120.11907 * 359.97438 * 16 15 14 18 18 C 1.38755 * 120.08224 * 0.02562 * 17 16 15 19 19 O 1.35902 * 120.02239 * 179.97438 * 18 17 16 20 20 C 1.38634 * 119.95820 * 359.75255 * 18 17 16 21 21 C 1.35850 * 126.08264 * 180.02562 * 10 9 7 22 22 H 0.97000 * 120.00401 * 179.97438 * 1 2 3 23 23 H 1.08002 * 125.82156 * 359.97438 * 11 10 9 24 24 H 1.07994 * 119.98487 * 0.02562 * 15 14 13 25 25 H 1.07999 * 119.94226 * 180.02562 * 16 15 14 26 26 H 1.08005 * 119.95706 * 180.02562 * 17 16 15 27 27 H 0.96702 * 113.99211 * 90.00390 * 19 18 17 28 28 H 1.07997 * 120.06799 * 180.27013 * 20 18 17 29 29 H 1.07995 * 126.23951 * 359.97150 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2498 1.6178 0.0000 4 1 2.4973 2.0464 1.4001 5 1 3.5474 1.4402 -0.7000 6 1 1.4474 2.6527 -0.7000 7 6 2.0089 -1.2006 -0.0058 8 1 3.0890 -1.2006 -0.0103 9 8 1.3350 -2.3679 -0.0059 10 6 2.0757 -3.5084 -0.0112 11 6 3.4770 -3.5840 -0.0229 12 7 3.8217 -4.8461 -0.0209 13 7 2.6561 -5.6229 -0.0182 14 6 2.5979 -7.0232 -0.0207 15 6 1.3718 -7.6679 -0.1217 16 6 1.3143 -9.0480 -0.1247 17 6 2.4760 -9.7907 -0.0277 18 6 3.7035 -9.1519 0.0734 19 8 4.8449 -9.8833 0.1692 20 6 3.7654 -7.7669 0.0721 21 6 1.5907 -4.7774 -0.0127 22 1 -0.4851 -0.8400 -0.0004 23 1 4.1553 -2.7437 -0.0296 24 1 0.4628 -7.0899 -0.1988 25 1 0.3602 -9.5477 -0.2037 26 1 2.4281 -10.8697 -0.0307 27 1 5.2483 -10.0961 -0.6835 28 1 4.7203 -7.2679 0.1463 29 1 0.5492 -5.0629 -0.0094 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260749761.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:24 Heat of formation + Delta-G solvation = 13.856201 kcal Electronic energy + Delta-G solvation = -16439.693834 eV Core-core repulsion = 13522.948626 eV Total energy + Delta-G solvation = -2916.745208 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.56321 -40.62520 -39.07158 -37.72032 -34.37790 -33.86491 -31.72972 -30.37618 -29.45528 -26.68881 -24.61208 -23.92702 -22.17070 -21.82321 -20.40484 -19.28168 -18.42477 -17.44582 -16.88293 -16.71223 -16.51383 -16.25505 -15.77038 -15.44833 -15.29157 -14.82049 -14.69682 -13.93690 -13.34734 -13.25898 -13.05324 -12.62836 -12.51856 -12.08538 -11.88876 -11.69167 -11.43132 -11.25669 -10.74324 -9.94766 -9.72764 -8.85104 -8.78679 -6.13003 -0.28363 0.15753 1.02979 1.26908 1.53747 1.57911 1.80110 1.81848 2.40740 2.60135 2.99934 3.10091 3.28627 3.75935 3.79343 4.00989 4.05783 4.16570 4.20063 4.43939 4.60340 4.68970 4.83886 5.08846 5.26463 5.32844 5.34141 5.43029 5.60634 6.12945 6.29489 6.45319 6.78063 6.95565 7.69721 8.62277 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.058156 B = 0.004420 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.348443 B = 6332.877477 C = 6800.437533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.049 4.049 3 Si 1.147 2.853 4 H -0.267 1.267 5 H -0.259 1.259 6 H -0.276 1.276 7 C -0.477 4.477 8 H 0.084 0.916 9 O -0.241 6.241 10 C -0.007 4.007 11 C 0.003 3.997 12 N -0.287 5.287 13 N -0.322 5.322 14 C 0.166 3.834 15 C -0.161 4.161 16 C -0.061 4.061 17 C -0.155 4.155 18 C 0.133 3.867 19 O -0.504 6.504 20 C -0.178 4.178 21 C -0.037 4.037 22 H 0.260 0.740 23 H 0.198 0.802 24 H 0.142 0.858 25 H 0.175 0.825 26 H 0.164 0.836 27 H 0.414 0.586 28 H 0.124 0.876 29 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.280 -18.623 -1.880 19.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.243 4.243 3 Si 0.964 3.036 4 H -0.193 1.193 5 H -0.183 1.183 6 H -0.201 1.201 7 C -0.553 4.553 8 H 0.102 0.898 9 O -0.149 6.149 10 C -0.063 4.063 11 C -0.184 4.184 12 N -0.108 5.108 13 N -0.105 5.105 14 C 0.074 3.926 15 C -0.182 4.182 16 C -0.079 4.079 17 C -0.174 4.174 18 C 0.087 3.913 19 O -0.318 6.318 20 C -0.199 4.199 21 C -0.176 4.176 22 H 0.068 0.932 23 H 0.214 0.786 24 H 0.160 0.840 25 H 0.192 0.808 26 H 0.181 0.819 27 H 0.274 0.726 28 H 0.142 0.858 29 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 5.694 -17.726 -1.294 18.662 hybrid contribution -0.267 -0.750 -0.423 0.901 sum 5.427 -18.475 -1.717 19.332 Atomic orbital electron populations 1.70691 1.07649 1.29959 1.47988 1.28221 0.96987 1.04580 0.94557 0.82525 0.73808 0.68984 0.78309 1.19258 1.18337 1.20122 1.22413 0.93115 0.82860 1.56931 0.89828 1.83603 1.33562 1.11413 1.86296 1.19486 0.90813 0.88473 1.07527 1.24351 0.95569 0.95162 1.03340 1.77059 1.07472 1.02438 1.23858 1.45409 1.03391 1.04060 1.57637 1.17728 0.96108 0.77287 1.01506 1.21183 0.95325 0.96485 1.05227 1.21256 1.00096 0.91241 0.95354 1.21777 0.90916 1.02303 1.02433 1.18217 0.87356 0.87649 0.98051 1.84766 1.38198 1.72151 1.36689 1.21089 0.97580 0.94439 1.06753 1.21510 0.94652 0.87224 1.14237 0.93178 0.78565 0.83977 0.80797 0.81858 0.72612 0.85846 0.78341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.82 13.70 21.61 0.30 -57.52 15 2 C -0.05 -2.78 5.49 84.82 0.47 -2.31 15 3 Si 1.15 48.26 29.92 68.60 2.05 50.32 15 4 H -0.27 -10.49 7.11 99.48 0.71 -9.78 15 5 H -0.26 -9.73 7.11 99.48 0.71 -9.02 15 6 H -0.28 -11.46 7.11 99.48 0.71 -10.76 15 7 C -0.48 -27.53 9.63 67.91 0.65 -26.88 15 8 H 0.08 4.45 5.95 -2.91 -0.02 4.43 15 9 O -0.24 -14.07 9.24 -25.11 -0.23 -14.31 15 10 C -0.01 -0.37 6.92 22.23 0.15 -0.21 15 11 C 0.00 0.13 11.06 85.35 0.94 1.07 15 12 N -0.29 -12.05 11.86 -56.71 -0.67 -12.72 15 13 N -0.32 -12.44 3.82 -186.86 -0.71 -13.15 15 14 C 0.17 5.18 6.68 38.09 0.25 5.43 15 15 C -0.16 -3.82 9.46 22.40 0.21 -3.61 15 16 C -0.06 -1.01 10.03 22.24 0.22 -0.78 15 17 C -0.16 -2.56 9.98 22.39 0.22 -2.34 15 18 C 0.13 2.87 6.70 22.49 0.15 3.02 15 19 O -0.50 -9.18 13.50 -92.45 -1.25 -10.43 15 20 C -0.18 -5.07 9.60 22.48 0.22 -4.85 15 21 C -0.04 -1.54 10.85 83.49 0.91 -0.63 15 22 H 0.26 16.82 7.97 -92.71 -0.74 16.08 15 23 H 0.20 8.10 6.77 -2.91 -0.02 8.08 15 24 H 0.14 3.06 6.77 -2.91 -0.02 3.04 15 25 H 0.17 1.54 8.06 -2.91 -0.02 1.51 15 26 H 0.16 1.67 8.06 -2.91 -0.02 1.65 15 27 H 0.41 3.28 9.06 -74.06 -0.67 2.61 15 28 H 0.12 3.87 7.70 -2.91 -0.02 3.85 15 29 H 0.20 6.85 7.09 -2.91 -0.02 6.83 15 Total: -1.00 -75.84 267.20 4.45 -71.39 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 0.56 Total: 18.53 kcal Atomic # 6 Polarization: -36.50 SS G_CDS: 4.40 Total: -32.09 kcal Atomic # 7 Polarization: -82.31 SS G_CDS: -1.09 Total: -83.40 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -1.48 Total: -24.74 kcal Atomic # 14 Polarization: 48.26 SS G_CDS: 2.05 Total: 50.32 kcal Total: -75.84 4.45 -71.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260749761.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.247 kcal (2) G-P(sol) polarization free energy of solvation -75.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds