Wall clock time and date at job start Mon Mar 30 2020 03:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.47421 * 2 1 4 4 C 1.52999 * 109.46818 * 120.00004 * 2 1 3 5 5 H 1.09002 * 110.23361 * 184.50459 * 4 2 1 6 6 C 1.51256 * 110.26415 * 306.47277 * 4 2 1 7 7 O 1.20766 * 123.44386 * 301.72338 * 6 4 2 8 8 C 1.50566 * 113.12150 * 121.75941 * 6 4 2 9 9 H 1.09004 * 109.61245 * 89.59039 * 8 6 4 10 10 C 1.50701 * 109.61575 * 209.94186 * 8 6 4 11 11 H 1.08005 * 119.99681 * 118.54429 * 10 8 6 12 12 C 1.37870 * 120.00281 * 298.54719 * 10 8 6 13 13 N 1.31512 * 120.00077 * 0.02562 * 12 10 8 14 14 Si 1.86803 * 120.00067 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.46814 * 60.00172 * 14 12 10 16 16 H 1.48494 * 109.47419 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47367 * 300.00381 * 14 12 10 18 18 C 1.55171 * 108.87779 * 329.85221 * 8 6 4 19 19 S 1.83298 * 110.26861 * 62.42638 * 4 2 1 20 20 O 1.42098 * 109.66178 * 13.84162 * 19 4 2 21 21 O 1.42096 * 109.66417 * 147.94755 * 19 4 2 22 22 H 1.08995 * 109.46716 * 59.99910 * 1 2 3 23 23 H 1.09004 * 109.46563 * 300.00613 * 1 2 3 24 24 H 1.08990 * 109.47069 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.46959 * 239.99228 * 2 1 3 26 26 H 1.08997 * 109.47496 * 173.50834 * 3 2 1 27 27 H 1.09004 * 109.46936 * 293.50362 * 3 2 1 28 28 H 1.09000 * 109.47232 * 53.50330 * 3 2 1 29 29 H 0.97005 * 120.00052 * 180.02562 * 13 12 10 30 30 H 1.08997 * 111.15031 * 159.38227 * 18 8 6 31 31 H 1.09002 * 111.15085 * 283.57452 * 18 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 3.1270 -0.6595 1.3029 6 6 1.4194 -0.1206 2.4910 7 8 1.5276 1.0437 2.7926 8 6 0.6535 -1.1228 3.3131 9 1 1.3212 -1.5877 4.0386 10 6 -0.4736 -0.4298 4.0346 11 1 -1.4967 -0.7143 3.8376 12 6 -0.1987 0.5676 4.9460 13 7 1.0470 0.9145 5.1854 14 14 -1.5959 1.4271 5.8397 15 1 -2.3708 0.4303 6.6215 16 1 -1.0393 2.4520 6.7589 17 1 -2.4883 2.0818 4.8496 18 6 0.0768 -2.2109 2.3690 19 16 1.5012 -2.4732 1.2354 20 8 1.0256 -2.8169 -0.0588 21 8 2.4802 -3.2796 1.8760 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3632 0.5140 0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 3.1239 1.4447 0.1162 27 1 1.7749 1.9216 -0.9424 28 1 1.5850 1.9888 0.8261 29 1 1.2404 1.6160 5.8269 30 1 -0.1619 -3.1217 2.9181 31 1 -0.7943 -1.8409 1.8282 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260798981.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:54 Heat of formation + Delta-G solvation = -106.150586 kcal Electronic energy + Delta-G solvation = -17258.031876 eV Core-core repulsion = 14439.233984 eV Total energy + Delta-G solvation = -2818.797892 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.076 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.94776 -36.82032 -35.63217 -35.06874 -33.85348 -31.64590 -28.05477 -26.85657 -25.68880 -22.92936 -20.62691 -18.95146 -18.28059 -16.93301 -16.33524 -15.64646 -15.26092 -15.11862 -14.58255 -14.12139 -13.81776 -13.28113 -12.82522 -12.63163 -12.46956 -12.08041 -11.78645 -11.77902 -11.63347 -11.24485 -11.19046 -11.02267 -10.89445 -10.73312 -10.62420 -10.48852 -10.01990 -9.68581 -9.36441 -8.59469 -8.29282 -6.19188 -4.26142 0.51147 2.88389 3.10117 3.24972 3.30149 3.31657 3.98923 4.30782 4.42630 4.68618 4.96702 5.09947 5.27275 5.41206 5.43093 5.58306 5.75696 5.83143 5.96634 6.06844 6.14548 6.22718 6.34049 6.59617 6.65612 6.81822 6.99336 7.69786 7.92327 8.63576 8.77089 9.39186 10.89293 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.028178 B = 0.010176 C = 0.008893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.428310 B = 2750.999354 C = 3147.862502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.052 4.052 3 C -0.146 4.146 4 C -0.626 4.626 5 H 0.148 0.852 6 C 0.387 3.613 7 O -0.371 6.371 8 C 0.000 4.000 9 H 0.083 0.917 10 C -0.532 4.532 11 H 0.069 0.931 12 C 0.076 3.924 13 N -0.854 5.854 14 Si 0.900 3.100 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.275 1.275 18 C -0.545 4.545 19 S 2.368 3.632 20 O -0.945 6.945 21 O -0.943 6.943 22 H 0.065 0.935 23 H 0.074 0.926 24 H 0.065 0.935 25 H 0.081 0.919 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.077 0.923 29 H 0.266 0.734 30 H 0.131 0.869 31 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.172 -2.253 -7.560 7.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.071 4.071 3 C -0.204 4.204 4 C -0.736 4.736 5 H 0.166 0.834 6 C 0.253 3.747 7 O -0.235 6.235 8 C -0.020 4.020 9 H 0.100 0.900 10 C -0.570 4.570 11 H 0.087 0.913 12 C -0.131 4.131 13 N -0.488 5.488 14 Si 0.728 3.272 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.200 1.200 18 C -0.677 4.677 19 S 2.554 3.446 20 O -0.942 6.942 21 O -0.940 6.940 22 H 0.084 0.916 23 H 0.093 0.907 24 H 0.083 0.917 25 H 0.100 0.900 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.149 0.851 31 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.427 -2.308 -7.765 8.112 hybrid contribution -0.707 1.079 0.860 1.550 sum -0.280 -1.229 -6.905 7.019 Atomic orbital electron populations 1.22271 0.94430 1.03051 1.03568 1.20509 0.96449 0.97083 0.93087 1.21893 1.01049 0.95192 1.02298 1.31117 1.11530 1.24222 1.06754 0.83426 1.24472 0.77397 0.91294 0.81573 1.90303 1.49475 1.17610 1.66139 1.19757 0.97836 0.90747 0.93662 0.90007 1.20522 0.91363 1.20846 1.24221 0.91318 1.24978 0.95757 0.96282 0.96127 1.69950 1.17933 1.28712 1.32177 0.86526 0.81957 0.79263 0.79498 1.20076 1.21176 1.20050 1.30490 1.15158 1.08620 1.13437 1.09564 0.79879 0.78021 0.77094 1.93538 1.80628 1.82023 1.38006 1.93579 1.58684 1.64849 1.76903 0.91630 0.90667 0.91659 0.90026 0.92928 0.92925 0.90430 0.92446 0.85094 0.84787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.73 7.98 37.16 0.30 -2.43 16 2 C -0.05 -0.81 2.40 -90.62 -0.22 -1.03 16 3 C -0.15 -2.24 8.76 37.16 0.33 -1.92 16 4 C -0.63 -10.81 3.07 -27.61 -0.08 -10.90 16 5 H 0.15 2.31 8.14 -51.93 -0.42 1.88 16 6 C 0.39 8.37 4.66 -28.83 -0.13 8.23 16 7 O -0.37 -9.21 12.55 5.99 0.08 -9.13 16 8 C 0.00 0.00 2.40 -91.84 -0.22 -0.22 16 9 H 0.08 1.91 8.14 -51.93 -0.42 1.49 16 10 C -0.53 -13.25 8.46 -34.44 -0.29 -13.54 16 11 H 0.07 1.64 7.75 -52.48 -0.41 1.24 16 12 C 0.08 2.00 4.91 -17.82 -0.09 1.91 16 13 N -0.85 -23.54 10.97 55.43 0.61 -22.93 16 14 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 15 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 16 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 18 C -0.54 -9.35 6.21 38.31 0.24 -9.12 16 19 S 2.37 40.03 5.33 -107.50 -0.57 39.46 16 20 O -0.94 -16.69 15.86 -57.66 -0.91 -17.61 16 21 O -0.94 -18.45 18.16 -57.66 -1.05 -19.50 16 22 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.07 1.31 7.08 -51.93 -0.37 0.94 16 24 H 0.06 0.97 4.88 -51.93 -0.25 0.71 16 25 H 0.08 1.14 7.94 -51.93 -0.41 0.72 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 1.39 6.25 -51.93 -0.32 1.07 16 29 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.13 1.97 8.14 -51.93 -0.42 1.54 16 31 H 0.13 2.10 6.79 -51.93 -0.35 1.75 16 LS Contribution 260.44 15.07 3.92 3.92 Total: -1.00 -30.98 260.44 -6.91 -37.90 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -3.79 Total: 1.51 kcal Atomic # 6 Polarization: -28.84 SS G_CDS: -0.18 Total: -29.02 kcal Atomic # 7 Polarization: -23.54 SS G_CDS: 0.61 Total: -22.93 kcal Atomic # 8 Polarization: -44.35 SS G_CDS: -1.89 Total: -46.24 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 40.03 SS G_CDS: -0.57 Total: 39.46 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.98 -6.91 -37.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260798981.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.255 kcal (2) G-P(sol) polarization free energy of solvation -30.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds