Wall clock time and date at job start Mon Mar 30 2020 03:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47210 * 2 1 4 4 C 1.53002 * 109.47231 * 120.00380 * 2 1 3 5 5 H 1.08994 * 110.23052 * 301.32432 * 4 2 1 6 6 C 1.51248 * 110.26215 * 179.34627 * 4 2 1 7 7 O 1.20765 * 123.43835 * 63.75446 * 6 4 2 8 8 C 1.50564 * 113.12474 * 243.71301 * 6 4 2 9 9 H 1.09001 * 109.61520 * 89.75433 * 8 6 4 10 10 C 1.50699 * 109.61596 * 209.94654 * 8 6 4 11 11 H 1.08002 * 119.99820 * 118.54576 * 10 8 6 12 12 C 1.37874 * 120.00227 * 298.54131 * 10 8 6 13 13 N 1.31514 * 119.99911 * 0.02562 * 12 10 8 14 14 Si 1.86804 * 120.00085 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.46820 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47094 * 120.00217 * 14 12 10 17 17 H 1.48501 * 109.47184 * 240.00431 * 14 12 10 18 18 C 1.55173 * 108.87576 * 329.85203 * 8 6 4 19 19 S 1.83298 * 110.26295 * 63.30084 * 4 2 1 20 20 O 1.42105 * 109.66253 * 251.87938 * 19 4 2 21 21 O 1.42097 * 109.66671 * 25.98955 * 19 4 2 22 22 H 1.09004 * 109.47667 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46856 * 299.99690 * 1 2 3 24 24 H 1.08998 * 109.47613 * 59.99441 * 1 2 3 25 25 H 1.08999 * 109.46856 * 240.00310 * 2 1 3 26 26 H 1.09005 * 109.47517 * 186.59573 * 3 2 1 27 27 H 1.08999 * 109.47672 * 306.59596 * 3 2 1 28 28 H 1.08999 * 109.46970 * 66.59909 * 3 2 1 29 29 H 0.97001 * 120.00063 * 179.97438 * 13 12 10 30 30 H 1.08994 * 111.15170 * 159.37871 * 18 8 6 31 31 H 1.09003 * 111.15833 * 283.57220 * 18 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6644 -0.2311 2.1473 6 6 3.5522 -0.7458 1.2592 7 8 4.2335 0.2492 1.3258 8 6 4.1217 -2.1373 1.1786 9 1 4.2638 -2.4146 0.1341 10 6 5.4463 -2.1842 1.8958 11 1 5.5752 -2.8325 2.7498 12 6 6.4935 -1.3995 1.4616 13 7 6.3362 -0.6096 0.4219 14 14 8.1356 -1.4581 2.3501 15 1 8.0535 -2.4197 3.4788 16 1 9.1946 -1.8943 1.4049 17 1 8.4642 -0.1075 2.8728 18 6 3.1306 -3.1249 1.8497 19 16 1.5232 -2.4797 1.2223 20 8 0.5084 -2.6948 2.1936 21 8 1.3297 -2.9009 -0.1209 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.8932 -0.5138 -0.8900 26 1 3.1236 1.4447 -0.1180 27 1 1.5835 1.9893 -0.8250 28 1 1.7763 1.9210 0.9431 29 1 7.0729 -0.0572 0.1166 30 1 3.3034 -4.1463 1.5109 31 1 3.1848 -3.0591 2.9363 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260800451.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:55 Heat of formation + Delta-G solvation = -130.357532 kcal Electronic energy + Delta-G solvation = -17039.808383 eV Core-core repulsion = 14219.960799 eV Total energy + Delta-G solvation = -2819.847584 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.076 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.45348 -38.12785 -37.21510 -36.66306 -35.66519 -33.59418 -29.42721 -28.16429 -27.43865 -24.49645 -21.92729 -20.63263 -19.94562 -18.67516 -17.63809 -17.35308 -16.99917 -16.50394 -16.22983 -15.81875 -15.35907 -14.68069 -14.51910 -14.25911 -13.72520 -13.53782 -13.26571 -13.16473 -13.07736 -13.03658 -12.84736 -12.75949 -12.56056 -12.24798 -12.16679 -11.82464 -11.62053 -11.35965 -10.98796 -10.59014 -10.00912 -8.17448 -6.27736 -0.91780 1.35091 1.41811 1.45183 1.50694 1.54141 2.41669 2.53075 2.96187 3.13454 3.33319 3.56472 3.87087 3.88180 4.12088 4.22567 4.26260 4.55777 4.67881 4.75517 4.80468 4.93757 5.06933 5.18420 5.23867 5.27723 5.43208 5.71604 6.03803 6.70993 7.02906 7.39788 8.90415 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.030666 B = 0.009557 C = 0.007889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.853012 B = 2929.177470 C = 3548.571396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.066 4.066 3 C -0.139 4.139 4 C -0.615 4.615 5 H 0.176 0.824 6 C 0.381 3.619 7 O -0.409 6.409 8 C -0.020 4.020 9 H 0.065 0.935 10 C -0.544 4.544 11 H 0.075 0.925 12 C 0.024 3.976 13 N -0.885 5.885 14 Si 0.955 3.045 15 H -0.259 1.259 16 H -0.280 1.280 17 H -0.289 1.289 18 C -0.539 4.539 19 S 2.401 3.599 20 O -0.956 6.956 21 O -0.951 6.951 22 H 0.046 0.954 23 H 0.081 0.919 24 H 0.093 0.907 25 H 0.077 0.923 26 H 0.040 0.960 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.260 0.740 30 H 0.154 0.846 31 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.108 -0.414 1.101 9.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.086 4.086 3 C -0.197 4.197 4 C -0.725 4.725 5 H 0.193 0.807 6 C 0.249 3.751 7 O -0.276 6.276 8 C -0.040 4.040 9 H 0.083 0.917 10 C -0.582 4.582 11 H 0.093 0.907 12 C -0.179 4.179 13 N -0.520 5.520 14 Si 0.781 3.219 15 H -0.183 1.183 16 H -0.205 1.205 17 H -0.216 1.216 18 C -0.670 4.670 19 S 2.587 3.413 20 O -0.953 6.953 21 O -0.948 6.948 22 H 0.065 0.935 23 H 0.100 0.900 24 H 0.112 0.888 25 H 0.095 0.905 26 H 0.059 0.941 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.172 0.828 31 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -9.556 -0.191 0.745 9.587 hybrid contribution 1.838 0.507 0.443 1.957 sum -7.719 0.316 1.188 7.816 Atomic orbital electron populations 1.22149 0.92473 1.02260 1.05235 1.20699 0.97107 0.97517 0.93261 1.21807 1.00991 0.94268 1.02665 1.31108 1.07012 1.24587 1.09773 0.80702 1.24604 0.86420 0.92542 0.71498 1.90299 1.64963 1.39099 1.33235 1.19821 0.96155 0.89232 0.98804 0.91741 1.21063 0.94729 1.26637 1.15806 0.90718 1.25751 1.02229 0.94423 0.95544 1.70095 1.32484 1.24485 1.24961 0.85546 0.79708 0.77667 0.78994 1.18314 1.20530 1.21550 1.30451 1.15434 1.09272 1.11881 1.08733 0.78470 0.78868 0.75214 1.93546 1.55860 1.84015 1.61885 1.93553 1.86050 1.79684 1.35543 0.93517 0.89977 0.88840 0.90454 0.94055 0.90387 0.91919 0.93100 0.82838 0.83192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.98 9.00 71.98 0.65 -3.33 16 2 C -0.07 -2.05 2.21 -10.80 -0.02 -2.07 16 3 C -0.14 -4.29 8.57 71.98 0.62 -3.67 16 4 C -0.62 -20.36 2.78 30.02 0.08 -20.28 16 5 H 0.18 4.88 8.14 -2.39 -0.02 4.86 16 6 C 0.38 16.60 6.01 29.23 0.18 16.78 16 7 O -0.41 -20.88 12.56 -1.46 -0.02 -20.90 16 8 C -0.02 -0.89 2.40 -11.58 -0.03 -0.92 16 9 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 10 C -0.54 -27.51 8.46 25.60 0.22 -27.29 16 11 H 0.07 3.59 7.75 -2.91 -0.02 3.56 16 12 C 0.02 1.30 4.91 84.65 0.42 1.71 16 13 N -0.89 -50.04 10.97 21.45 0.24 -49.80 16 14 Si 0.96 42.35 29.54 68.60 2.03 44.38 16 15 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 16 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 17 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 18 C -0.54 -17.72 6.80 72.73 0.49 -17.22 16 19 S 2.40 76.62 4.77 -56.49 -0.27 76.36 16 20 O -0.96 -32.32 18.16 -127.53 -2.32 -34.64 16 21 O -0.95 -34.44 16.80 -127.53 -2.14 -36.59 16 22 H 0.05 1.18 6.70 -2.39 -0.02 1.16 16 23 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.08 2.57 7.81 -2.39 -0.02 2.56 16 26 H 0.04 1.58 6.29 -2.38 -0.01 1.57 16 27 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.06 1.78 8.14 -2.39 -0.02 1.77 16 29 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 30 H 0.15 4.32 8.14 -2.39 -0.02 4.30 16 31 H 0.15 4.38 8.10 -2.39 -0.02 4.36 16 Total: -1.00 -66.55 267.20 1.24 -65.31 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 1.12 Total: 12.18 kcal Atomic # 6 Polarization: -58.90 SS G_CDS: 2.60 Total: -56.30 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: 0.24 Total: -49.80 kcal Atomic # 8 Polarization: -87.64 SS G_CDS: -4.48 Total: -92.12 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Atomic # 16 Polarization: 76.62 SS G_CDS: -0.27 Total: 76.36 kcal Total: -66.55 1.24 -65.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260800451.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.049 kcal (2) G-P(sol) polarization free energy of solvation -66.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds