Wall clock time and date at job start Mon Mar 30 2020 04:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00326 * 2 1 4 4 H 1.48501 * 109.46685 * 239.99862 * 3 2 1 5 5 H 1.48505 * 109.46767 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47287 * 119.99655 * 3 2 1 7 7 C 1.37882 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00059 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99924 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47332 * 179.97438 * 9 7 2 11 11 N 1.30747 * 126.36409 * 84.16088 * 10 9 7 12 12 N 1.28417 * 110.64797 * 179.97438 * 11 10 9 13 13 N 1.28950 * 110.20207 * 359.97438 * 12 11 10 14 14 N 1.35065 * 126.36356 * 264.14193 * 10 9 7 15 15 C 1.40261 * 127.38815 * 0.03767 * 14 10 9 16 16 C 1.38877 * 120.03757 * 42.36468 * 15 14 10 17 17 C 1.38123 * 120.04456 * 180.02562 * 16 15 14 18 18 C 1.38212 * 120.12629 * 359.97438 * 17 16 15 19 19 C 1.38753 * 120.06775 * 359.97438 * 18 17 16 20 20 O 1.35898 * 120.02123 * 180.02562 * 19 18 17 21 21 C 1.38648 * 119.95426 * 359.76557 * 19 18 17 22 22 H 0.96995 * 119.99391 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.47431 * 59.99536 * 9 7 2 24 24 H 1.09007 * 109.46728 * 299.99185 * 9 7 2 25 25 H 1.07998 * 119.97128 * 359.97438 * 16 15 14 26 26 H 1.08006 * 119.93985 * 180.02562 * 17 16 15 27 27 H 1.07995 * 119.96404 * 180.02562 * 18 17 16 28 28 H 0.96704 * 113.99898 * 90.00271 * 20 19 18 29 29 H 1.08001 * 120.06145 * 180.24869 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 7 2.8153 -4.1644 1.0479 12 7 3.5912 -5.1273 0.7019 13 7 3.5567 -5.2896 -0.5768 14 7 2.6661 -4.3255 -1.0814 15 6 2.3072 -4.1161 -2.4211 16 6 2.2076 -2.8239 -2.9202 17 6 1.8537 -2.6174 -4.2392 18 6 1.5983 -3.6953 -5.0658 19 6 1.6973 -4.9884 -4.5726 20 8 1.4465 -6.0476 -5.3863 21 6 2.0577 -5.1994 -3.2505 22 1 -0.4849 0.8401 -0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6241 -2.5567 0.8904 25 1 2.4063 -1.9800 -2.2762 26 1 1.7771 -1.6118 -4.6257 27 1 1.3221 -3.5309 -6.0968 28 1 2.2260 -6.3775 -5.8541 29 1 2.1392 -6.2053 -2.8658 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260801477.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:43 Heat of formation + Delta-G solvation = 94.621697 kcal Electronic energy + Delta-G solvation = -17111.505057 eV Core-core repulsion = 14230.554855 eV Total energy + Delta-G solvation = -2880.950202 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.50341 -39.73963 -37.08972 -34.50727 -33.71063 -31.91000 -30.36805 -29.39226 -28.47066 -24.56826 -23.73274 -22.71724 -21.67996 -20.63759 -18.75184 -16.98922 -16.76349 -16.23119 -15.96294 -15.21675 -15.03317 -14.76934 -13.82500 -13.73852 -13.20710 -12.59418 -12.54584 -12.28403 -12.11406 -11.70792 -11.36816 -11.10892 -10.88347 -10.82330 -10.58268 -10.38685 -10.17213 -10.02653 -9.21847 -8.85943 -8.73239 -8.52344 -6.36530 -4.44389 0.83090 1.22052 1.82515 2.34401 2.98843 3.16221 3.22397 3.26734 3.56564 4.05917 4.19917 4.80624 4.90131 4.98789 5.03526 5.19248 5.24465 5.45865 5.65358 5.73220 5.93589 6.10040 6.24889 6.43084 6.49993 6.61713 6.96041 7.01331 7.16909 7.51594 7.55953 7.80192 8.57416 9.10559 9.21598 10.73076 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.019716 B = 0.008411 C = 0.006389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.804385 B = 3328.089279 C = 4381.398059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.072 3.928 3 Si 0.902 3.098 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.528 4.528 8 H 0.062 0.938 9 C 0.085 3.915 10 C 0.307 3.693 11 N -0.345 5.345 12 N -0.046 5.046 13 N -0.114 5.114 14 N -0.348 5.348 15 C 0.154 3.846 16 C -0.103 4.103 17 C -0.086 4.086 18 C -0.137 4.137 19 C 0.108 3.892 20 O -0.495 6.495 21 C -0.130 4.130 22 H 0.270 0.730 23 H 0.052 0.948 24 H 0.067 0.933 25 H 0.166 0.834 26 H 0.141 0.859 27 H 0.134 0.866 28 H 0.390 0.610 29 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.148 -4.822 -11.495 12.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.133 4.133 3 Si 0.729 3.271 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.567 4.567 8 H 0.080 0.920 9 C 0.045 3.955 10 C 0.033 3.967 11 N -0.196 5.196 12 N -0.041 5.041 13 N -0.099 5.099 14 N -0.139 5.139 15 C 0.062 3.938 16 C -0.124 4.124 17 C -0.105 4.105 18 C -0.156 4.156 19 C 0.063 3.937 20 O -0.305 6.305 21 C -0.151 4.151 22 H 0.080 0.920 23 H 0.070 0.930 24 H 0.085 0.915 25 H 0.183 0.817 26 H 0.159 0.841 27 H 0.151 0.849 28 H 0.245 0.755 29 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.291 -5.598 -10.562 12.172 hybrid contribution 0.404 1.187 -0.702 1.437 sum 2.695 -4.411 -11.265 12.394 Atomic orbital electron populations 1.69916 1.06048 1.27884 1.47868 1.24925 0.94930 0.99348 0.94096 0.86470 0.79538 0.81954 0.79145 1.19884 1.20855 1.19744 1.20700 0.93095 0.88632 1.54277 0.92026 1.18345 0.90457 0.85554 1.01166 1.27243 0.94754 0.93989 0.80696 1.74511 1.11471 1.08493 1.25158 1.77882 1.12275 1.09826 1.04140 1.82450 1.11092 1.10966 1.05396 1.48871 1.32456 1.25798 1.06810 1.17220 1.02113 0.94215 0.80275 1.21834 0.97570 0.96389 0.96562 1.20968 0.97786 0.99352 0.92420 1.21556 1.01302 0.91752 1.00977 1.18060 0.99807 0.86831 0.88975 1.84847 1.37617 1.47363 1.60674 1.21206 1.01089 0.98959 0.93860 0.92048 0.92964 0.91477 0.81681 0.84147 0.84858 0.75474 0.84638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.07 13.29 55.43 0.74 -22.33 15 2 C 0.07 1.80 5.46 -17.82 -0.10 1.70 15 3 Si 0.90 19.53 29.54 -169.99 -5.02 14.51 15 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 15 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 15 6 H -0.27 -6.00 7.11 56.52 0.40 -5.60 15 7 C -0.53 -13.20 7.45 -34.44 -0.26 -13.45 15 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 15 9 C 0.09 2.01 4.66 -29.04 -0.14 1.87 15 10 C 0.31 6.95 7.16 -155.19 -1.11 5.84 15 11 N -0.35 -8.16 12.15 32.75 0.40 -7.76 15 12 N -0.05 -1.04 13.39 60.35 0.81 -0.23 15 13 N -0.11 -2.42 13.82 60.35 0.83 -1.58 15 14 N -0.35 -7.17 3.74 -7.98 -0.03 -7.20 15 15 C 0.15 2.73 6.16 -83.59 -0.51 2.21 15 16 C -0.10 -1.74 8.42 -39.39 -0.33 -2.07 15 17 C -0.09 -1.15 10.03 -39.63 -0.40 -1.55 15 18 C -0.14 -1.63 9.98 -39.40 -0.39 -2.02 15 19 C 0.11 1.40 6.70 -39.24 -0.26 1.14 15 20 O -0.50 -5.39 13.50 -19.42 -0.26 -5.66 15 21 C -0.13 -1.98 9.83 -39.26 -0.39 -2.37 15 22 H 0.27 6.71 8.31 -40.82 -0.34 6.37 15 23 H 0.05 1.22 7.01 -51.93 -0.36 0.86 15 24 H 0.07 1.68 8.14 -51.92 -0.42 1.26 15 25 H 0.17 3.15 5.72 -52.49 -0.30 2.85 15 26 H 0.14 1.55 8.06 -52.48 -0.42 1.12 15 27 H 0.13 1.23 8.06 -52.49 -0.42 0.80 15 28 H 0.39 2.23 9.06 45.56 0.41 2.64 15 29 H 0.14 2.02 8.06 -52.49 -0.42 1.60 15 LS Contribution 266.76 15.07 4.02 4.02 Total: -1.00 -29.00 266.76 -3.89 -32.88 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -1.48 Total: 2.06 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -3.89 Total: -8.70 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: 2.75 Total: -39.11 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: -0.26 Total: -5.66 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.51 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.00 -3.89 -32.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260801477.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.504 kcal (2) G-P(sol) polarization free energy of solvation -28.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds