Wall clock time and date at job start Mon Mar 30 2020 04:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00326 * 2 1 4 4 H 1.48501 * 109.46685 * 239.99862 * 3 2 1 5 5 H 1.48505 * 109.46767 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47287 * 119.99655 * 3 2 1 7 7 C 1.37882 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00059 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99924 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47332 * 179.97438 * 9 7 2 11 11 N 1.30747 * 126.36409 * 84.16088 * 10 9 7 12 12 N 1.28417 * 110.64797 * 179.97438 * 11 10 9 13 13 N 1.28950 * 110.20207 * 359.97438 * 12 11 10 14 14 N 1.35065 * 126.36356 * 264.14193 * 10 9 7 15 15 C 1.40261 * 127.38815 * 0.03767 * 14 10 9 16 16 C 1.38877 * 120.03757 * 42.36468 * 15 14 10 17 17 C 1.38123 * 120.04456 * 180.02562 * 16 15 14 18 18 C 1.38212 * 120.12629 * 359.97438 * 17 16 15 19 19 C 1.38753 * 120.06775 * 359.97438 * 18 17 16 20 20 O 1.35898 * 120.02123 * 180.02562 * 19 18 17 21 21 C 1.38648 * 119.95426 * 359.76557 * 19 18 17 22 22 H 0.96995 * 119.99391 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.47431 * 59.99536 * 9 7 2 24 24 H 1.09007 * 109.46728 * 299.99185 * 9 7 2 25 25 H 1.07998 * 119.97128 * 359.97438 * 16 15 14 26 26 H 1.08006 * 119.93985 * 180.02562 * 17 16 15 27 27 H 1.07995 * 119.96404 * 180.02562 * 18 17 16 28 28 H 0.96704 * 113.99898 * 90.00271 * 20 19 18 29 29 H 1.08001 * 120.06145 * 180.24869 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 7 2.8153 -4.1644 1.0479 12 7 3.5912 -5.1273 0.7019 13 7 3.5567 -5.2896 -0.5768 14 7 2.6661 -4.3255 -1.0814 15 6 2.3072 -4.1161 -2.4211 16 6 2.2076 -2.8239 -2.9202 17 6 1.8537 -2.6174 -4.2392 18 6 1.5983 -3.6953 -5.0658 19 6 1.6973 -4.9884 -4.5726 20 8 1.4465 -6.0476 -5.3863 21 6 2.0577 -5.1994 -3.2505 22 1 -0.4849 0.8401 -0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6241 -2.5567 0.8904 25 1 2.4063 -1.9800 -2.2762 26 1 1.7771 -1.6118 -4.6257 27 1 1.3221 -3.5309 -6.0968 28 1 2.2260 -6.3775 -5.8541 29 1 2.1392 -6.2053 -2.8658 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260801477.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:42 Heat of formation + Delta-G solvation = 74.700177 kcal Electronic energy + Delta-G solvation = -17112.368919 eV Core-core repulsion = 14230.554855 eV Total energy + Delta-G solvation = -2881.814064 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.21459 -40.85162 -38.18110 -36.08861 -35.41265 -33.73223 -31.63100 -30.61950 -30.27414 -26.24913 -25.41303 -23.98717 -23.08228 -22.21660 -19.99766 -18.81382 -18.03885 -17.51581 -17.34217 -16.83130 -16.55564 -15.89036 -15.52139 -15.00037 -14.69687 -14.41424 -13.97684 -13.79018 -13.52127 -13.12796 -12.93932 -12.79890 -12.62533 -12.24949 -12.06780 -11.95400 -11.89324 -11.67585 -11.03635 -10.66692 -10.01553 -9.71486 -8.29795 -6.43931 -0.55768 0.12107 0.34762 0.78662 1.20692 1.44644 1.48146 1.55472 2.38617 2.43991 2.99179 3.06962 3.25795 3.52438 3.77904 3.93128 4.00864 4.17610 4.31182 4.42038 4.49655 4.80640 5.03271 5.10513 5.16377 5.25058 5.31685 5.39828 5.58577 5.74773 5.87918 6.60172 6.79533 7.25125 7.35830 8.80413 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.019716 B = 0.008411 C = 0.006389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.804385 B = 3328.089279 C = 4381.398059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.034 3.966 3 Si 0.961 3.039 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.536 4.536 8 H 0.051 0.949 9 C 0.100 3.900 10 C 0.294 3.706 11 N -0.366 5.366 12 N -0.059 5.059 13 N -0.107 5.107 14 N -0.334 5.334 15 C 0.116 3.884 16 C -0.122 4.122 17 C -0.079 4.079 18 C -0.116 4.116 19 C 0.124 3.876 20 O -0.497 6.497 21 C -0.137 4.137 22 H 0.273 0.727 23 H 0.051 0.949 24 H 0.045 0.955 25 H 0.138 0.862 26 H 0.167 0.833 27 H 0.173 0.827 28 H 0.416 0.584 29 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.224 -4.498 -14.205 15.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.168 4.168 3 Si 0.785 3.215 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.204 1.204 7 C -0.574 4.574 8 H 0.070 0.930 9 C 0.060 3.940 10 C 0.019 3.981 11 N -0.218 5.218 12 N -0.053 5.053 13 N -0.092 5.092 14 N -0.125 5.125 15 C 0.025 3.975 16 C -0.143 4.143 17 C -0.098 4.098 18 C -0.135 4.135 19 C 0.078 3.922 20 O -0.311 6.311 21 C -0.157 4.157 22 H 0.082 0.918 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.156 0.844 26 H 0.184 0.816 27 H 0.191 0.809 28 H 0.276 0.724 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.386 -5.297 -13.309 14.522 hybrid contribution 0.360 0.982 -0.050 1.047 sum 2.746 -4.315 -13.359 14.305 Atomic orbital electron populations 1.69998 1.07260 1.28824 1.48532 1.25606 0.95595 1.02150 0.93474 0.85552 0.78448 0.78267 0.79198 1.18506 1.20139 1.20375 1.20781 0.92659 0.89551 1.54442 0.93035 1.18040 0.90291 0.85764 0.99922 1.26895 0.95328 0.94450 0.81390 1.74422 1.12102 1.09094 1.26147 1.77846 1.12765 1.10040 1.04685 1.82347 1.10785 1.11033 1.05012 1.48961 1.31225 1.24581 1.07739 1.17587 1.05049 0.95573 0.79251 1.21721 0.99515 0.95046 0.97984 1.21267 0.96381 1.01278 0.90851 1.21932 0.98700 0.90504 1.02362 1.18079 0.97933 0.87968 0.88192 1.84796 1.39323 1.46699 1.60287 1.21279 1.01591 0.98063 0.94795 0.91750 0.93102 0.93677 0.84439 0.81584 0.80930 0.72406 0.84849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.92 13.29 21.45 0.28 -47.64 15 2 C 0.03 1.71 5.46 84.66 0.46 2.17 15 3 Si 0.96 39.77 29.54 68.60 2.03 41.80 15 4 H -0.26 -10.17 7.11 99.48 0.71 -9.46 15 5 H -0.28 -11.07 7.11 99.48 0.71 -10.37 15 6 H -0.28 -11.74 7.11 99.48 0.71 -11.03 15 7 C -0.54 -27.38 7.45 25.60 0.19 -27.19 15 8 H 0.05 2.69 7.74 -2.91 -0.02 2.67 15 9 C 0.10 4.91 4.66 29.10 0.14 5.04 15 10 C 0.29 13.74 7.16 138.05 0.99 14.73 15 11 N -0.37 -17.81 12.15 -50.29 -0.61 -18.43 15 12 N -0.06 -2.69 13.39 37.02 0.50 -2.19 15 13 N -0.11 -4.57 13.82 37.02 0.51 -4.06 15 14 N -0.33 -14.03 3.74 -179.16 -0.67 -14.70 15 15 C 0.12 4.10 6.16 38.06 0.23 4.34 15 16 C -0.12 -4.05 8.42 22.40 0.19 -3.86 15 17 C -0.08 -1.89 10.03 22.24 0.22 -1.67 15 18 C -0.12 -2.27 9.98 22.39 0.22 -2.05 15 19 C 0.12 2.78 6.70 22.49 0.15 2.93 15 20 O -0.50 -8.79 13.50 -92.40 -1.25 -10.04 15 21 C -0.14 -3.97 9.83 22.48 0.22 -3.75 15 22 H 0.27 13.56 8.31 -92.71 -0.77 12.79 15 23 H 0.05 2.47 7.01 -2.39 -0.02 2.46 15 24 H 0.05 2.37 8.14 -2.38 -0.02 2.35 15 25 H 0.14 5.36 5.72 -2.91 -0.02 5.34 15 26 H 0.17 3.07 8.06 -2.91 -0.02 3.05 15 27 H 0.17 2.11 8.06 -2.91 -0.02 2.08 15 28 H 0.42 2.90 9.06 -74.05 -0.67 2.23 15 29 H 0.13 3.86 8.06 -2.91 -0.02 3.84 15 Total: -1.00 -62.95 266.76 4.34 -58.61 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: 0.53 Total: 5.95 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: 3.02 Total: -9.30 kcal Atomic # 7 Polarization: -87.03 SS G_CDS: 0.01 Total: -87.01 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -1.25 Total: -10.04 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.80 kcal Total: -62.95 4.34 -58.61 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260801477.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.312 kcal (2) G-P(sol) polarization free energy of solvation -62.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds