Wall clock time and date at job start Mon Mar 30 2020 03:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72240 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72088 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72124 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.08002 * 119.99706 * 0.27353 * 7 2 1 9 9 C 1.50699 * 119.99783 * 180.27665 * 7 2 1 10 10 C 1.50701 * 109.46837 * 179.97438 * 9 7 2 11 11 N 1.30045 * 126.18458 * 269.69282 * 10 9 7 12 12 O 1.21283 * 110.50129 * 179.80304 * 11 10 9 13 13 C 1.34221 * 109.69493 * 0.46360 * 12 11 10 14 14 C 1.47652 * 126.68599 * 179.71805 * 13 12 11 15 15 C 1.39692 * 120.09098 * 179.72526 * 14 13 12 16 16 C 1.37755 * 119.91142 * 179.71798 * 15 14 13 17 17 C 1.38939 * 120.08923 * 0.55453 * 16 15 14 18 18 O 1.35784 * 119.91133 * 179.74226 * 17 16 15 19 19 C 1.38935 * 120.17925 * 359.71973 * 17 16 15 20 20 C 1.37764 * 120.09039 * 0.02562 * 19 17 16 21 21 N 1.32195 * 106.62834 * 359.71335 * 13 12 11 22 22 H 0.97004 * 119.99485 * 0.02562 * 1 2 3 23 23 H 1.08992 * 109.47047 * 299.99662 * 9 7 2 24 24 H 1.09005 * 109.47370 * 60.00470 * 9 7 2 25 25 H 1.08003 * 120.03951 * 359.97438 * 15 14 13 26 26 H 1.08005 * 119.95488 * 180.27364 * 16 15 14 27 27 H 0.96700 * 114.00083 * 269.97741 * 18 17 16 28 28 H 1.08006 * 119.95945 * 179.97438 * 19 17 16 29 29 H 1.07996 * 120.04943 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5027 2.0428 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0058 8 1 1.4644 -2.1294 0.0058 9 6 3.5114 -1.1942 0.0121 10 6 4.0137 -2.6150 0.0182 11 7 4.2704 -3.3340 1.0710 12 8 4.6556 -4.4378 0.7479 13 6 4.6926 -4.5302 -0.5906 14 6 5.1101 -5.7043 -1.3826 15 6 5.0896 -5.6509 -2.7783 16 6 5.4854 -6.7465 -3.5136 17 6 5.8937 -7.9075 -2.8688 18 8 6.2781 -8.9870 -3.5971 19 6 5.9101 -7.9667 -1.4808 20 6 5.5208 -6.8736 -0.7382 21 7 4.2822 -3.3651 -1.0616 22 1 -0.4849 0.8401 -0.0004 23 1 3.8785 -0.6826 -0.8776 24 1 3.8711 -0.6783 0.9024 25 1 4.7677 -4.7503 -3.2802 26 1 5.4740 -6.7044 -4.5927 27 1 5.5567 -9.5945 -3.8108 28 1 6.2278 -8.8712 -0.9832 29 1 5.5342 -6.9202 0.3407 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260870472.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:33 Heat of formation + Delta-G solvation = 48.505283 kcal Electronic energy + Delta-G solvation = -16343.013396 eV Core-core repulsion = 13427.770685 eV Total energy + Delta-G solvation = -2915.242711 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.91075 -39.91476 -37.13780 -35.57524 -33.33403 -32.33458 -31.35097 -29.79712 -28.94240 -24.28495 -24.01071 -22.89242 -22.06160 -20.46948 -18.72387 -17.69356 -17.53514 -16.73080 -16.21382 -15.71504 -15.60074 -14.45291 -14.28127 -13.73859 -13.35952 -13.00560 -12.65222 -12.42836 -12.25759 -12.10235 -11.67425 -11.43530 -10.80472 -10.74900 -10.67755 -10.40913 -10.29617 -9.71254 -9.32737 -9.30905 -8.67858 -8.44269 -6.16759 -4.18303 0.43004 1.09368 1.94173 2.93462 3.07736 3.24643 3.31805 3.33494 3.47674 3.89866 4.10869 4.33001 4.66482 4.69104 4.87220 5.05072 5.15749 5.25630 5.37423 5.51043 5.75869 5.99085 6.09624 6.18214 6.34676 6.43533 6.58938 6.79633 6.95585 7.30930 7.47319 8.33970 8.80547 8.83328 9.39584 10.95918 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.046618 B = 0.004460 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.479437 B = 6276.531074 C = 6512.120646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.075 3.925 3 Si 0.879 3.121 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.519 4.519 8 H 0.073 0.927 9 C 0.067 3.933 10 C 0.225 3.775 11 N -0.393 5.393 12 O 0.071 5.929 13 C 0.189 3.811 14 C -0.021 4.021 15 C -0.049 4.049 16 C -0.148 4.148 17 C 0.122 3.878 18 O -0.499 6.499 19 C -0.148 4.148 20 C -0.068 4.068 21 N -0.462 5.462 22 H 0.267 0.733 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.146 0.854 26 H 0.138 0.862 27 H 0.393 0.607 28 H 0.137 0.863 29 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.970 -15.827 -5.617 20.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.128 4.128 3 Si 0.706 3.294 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.557 4.557 8 H 0.091 0.909 9 C 0.028 3.972 10 C -0.047 4.047 11 N -0.101 5.101 12 O 0.014 5.986 13 C -0.029 4.029 14 C -0.023 4.023 15 C -0.069 4.069 16 C -0.166 4.166 17 C 0.077 3.923 18 O -0.310 6.310 19 C -0.167 4.167 20 C -0.088 4.088 21 N -0.196 5.196 22 H 0.077 0.923 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.164 0.836 26 H 0.156 0.844 27 H 0.250 0.750 28 H 0.155 0.845 29 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 12.141 -14.807 -5.040 19.800 hybrid contribution -0.203 0.469 -0.067 0.515 sum 11.938 -14.338 -5.107 19.344 Atomic orbital electron populations 1.69881 1.06227 1.27279 1.49651 1.24902 0.94837 0.98998 0.94069 0.86782 0.80378 0.83371 0.78910 1.19749 1.20850 1.18842 1.20677 0.87290 0.95093 1.52686 0.90915 1.18279 0.97946 0.81919 0.99060 1.26283 0.95567 1.01090 0.81757 1.74606 1.19261 0.92329 1.23872 1.85344 1.61689 1.27847 1.23703 1.26251 0.98943 0.95128 0.82604 1.17272 1.04008 0.89202 0.91837 1.21194 0.95141 0.98948 0.91643 1.21366 1.01142 0.93110 1.00988 1.18693 0.96087 0.87877 0.89629 1.84775 1.38090 1.34837 1.73311 1.21298 1.02555 0.99729 0.93082 1.21169 0.95768 0.91000 1.00816 1.72129 1.16538 1.01084 1.29896 0.92287 0.93395 0.93445 0.83625 0.84433 0.74974 0.84544 0.84218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.34 13.96 55.43 0.77 -26.56 15 2 C 0.07 2.17 5.47 -17.82 -0.10 2.07 15 3 Si 0.88 21.19 27.47 -169.99 -4.67 16.52 15 4 H -0.27 -6.39 7.11 56.52 0.40 -5.98 15 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 6 H -0.26 -6.07 6.54 56.52 0.37 -5.70 15 7 C -0.52 -15.14 9.65 -34.44 -0.33 -15.47 15 8 H 0.07 2.35 7.98 -52.49 -0.42 1.93 15 9 C 0.07 1.68 4.67 -29.03 -0.14 1.54 15 10 C 0.23 5.30 7.39 -156.56 -1.16 4.14 15 11 N -0.39 -8.79 12.15 31.21 0.38 -8.41 15 12 O 0.07 1.36 11.13 16.60 0.18 1.54 15 13 C 0.19 3.37 8.00 -13.88 -0.11 3.26 15 14 C -0.02 -0.29 5.87 -104.97 -0.62 -0.90 15 15 C -0.05 -0.60 9.70 -39.21 -0.38 -0.98 15 16 C -0.15 -1.45 9.97 -39.50 -0.39 -1.84 15 17 C 0.12 1.13 6.71 -39.06 -0.26 0.87 15 18 O -0.50 -3.85 13.49 -19.06 -0.26 -4.11 15 19 C -0.15 -1.34 9.97 -39.50 -0.39 -1.73 15 20 C -0.07 -0.72 9.72 -39.21 -0.38 -1.10 15 21 N -0.46 -9.85 11.26 -10.17 -0.11 -9.96 15 22 H 0.27 7.58 8.31 -40.82 -0.34 7.24 15 23 H 0.05 1.15 7.57 -51.93 -0.39 0.76 15 24 H 0.05 1.17 7.20 -51.93 -0.37 0.79 15 25 H 0.15 1.83 7.87 -52.48 -0.41 1.42 15 26 H 0.14 1.08 8.06 -52.48 -0.42 0.66 15 27 H 0.39 1.12 9.06 45.56 0.41 1.53 15 28 H 0.14 0.92 8.06 -52.48 -0.42 0.50 15 29 H 0.14 1.30 7.94 -52.49 -0.42 0.88 15 LS Contribution 269.38 15.07 4.06 4.06 Total: -1.00 -33.85 269.38 -5.52 -39.37 By element: Atomic # 1 Polarization: -0.69 SS G_CDS: -1.62 Total: -2.30 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -4.26 Total: -10.14 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: 1.04 Total: -44.94 kcal Atomic # 8 Polarization: -2.49 SS G_CDS: -0.07 Total: -2.56 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -33.85 -5.52 -39.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260870472.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.871 kcal (2) G-P(sol) polarization free energy of solvation -33.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds