Wall clock time and date at job start Mon Mar 30 2020 03:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72240 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72088 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72124 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.08002 * 119.99706 * 0.27353 * 7 2 1 9 9 C 1.50699 * 119.99783 * 180.27665 * 7 2 1 10 10 C 1.50701 * 109.46837 * 179.97438 * 9 7 2 11 11 N 1.30045 * 126.18458 * 269.69282 * 10 9 7 12 12 O 1.21283 * 110.50129 * 179.80304 * 11 10 9 13 13 C 1.34221 * 109.69493 * 0.46360 * 12 11 10 14 14 C 1.47652 * 126.68599 * 179.71805 * 13 12 11 15 15 C 1.39692 * 120.09098 * 179.72526 * 14 13 12 16 16 C 1.37755 * 119.91142 * 179.71798 * 15 14 13 17 17 C 1.38939 * 120.08923 * 0.55453 * 16 15 14 18 18 O 1.35784 * 119.91133 * 179.74226 * 17 16 15 19 19 C 1.38935 * 120.17925 * 359.71973 * 17 16 15 20 20 C 1.37764 * 120.09039 * 0.02562 * 19 17 16 21 21 N 1.32195 * 106.62834 * 359.71335 * 13 12 11 22 22 H 0.97004 * 119.99485 * 0.02562 * 1 2 3 23 23 H 1.08992 * 109.47047 * 299.99662 * 9 7 2 24 24 H 1.09005 * 109.47370 * 60.00470 * 9 7 2 25 25 H 1.08003 * 120.03951 * 359.97438 * 15 14 13 26 26 H 1.08005 * 119.95488 * 180.27364 * 16 15 14 27 27 H 0.96700 * 114.00083 * 269.97741 * 18 17 16 28 28 H 1.08006 * 119.95945 * 179.97438 * 19 17 16 29 29 H 1.07996 * 120.04943 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5027 2.0428 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0058 8 1 1.4644 -2.1294 0.0058 9 6 3.5114 -1.1942 0.0121 10 6 4.0137 -2.6150 0.0182 11 7 4.2704 -3.3340 1.0710 12 8 4.6556 -4.4378 0.7479 13 6 4.6926 -4.5302 -0.5906 14 6 5.1101 -5.7043 -1.3826 15 6 5.0896 -5.6509 -2.7783 16 6 5.4854 -6.7465 -3.5136 17 6 5.8937 -7.9075 -2.8688 18 8 6.2781 -8.9870 -3.5971 19 6 5.9101 -7.9667 -1.4808 20 6 5.5208 -6.8736 -0.7382 21 7 4.2822 -3.3651 -1.0616 22 1 -0.4849 0.8401 -0.0004 23 1 3.8785 -0.6826 -0.8776 24 1 3.8711 -0.6783 0.9024 25 1 4.7677 -4.7503 -3.2802 26 1 5.4740 -6.7044 -4.5927 27 1 5.5567 -9.5945 -3.8108 28 1 6.2278 -8.8712 -0.9832 29 1 5.5342 -6.9202 0.3407 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260870472.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:33 Heat of formation + Delta-G solvation = 22.101241 kcal Electronic energy + Delta-G solvation = -16344.158361 eV Core-core repulsion = 13427.770685 eV Total energy + Delta-G solvation = -2916.387676 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -46.53154 -40.70453 -37.91903 -37.23834 -35.25359 -34.00023 -32.19900 -31.46821 -30.33222 -26.08833 -25.32841 -24.06449 -23.29471 -21.92060 -19.49830 -19.42158 -18.90087 -18.77302 -17.53249 -16.60256 -16.46047 -16.35137 -15.32369 -15.12169 -14.51387 -14.34147 -14.25146 -13.85901 -13.58091 -13.44263 -13.15054 -12.94014 -12.60202 -12.45877 -12.07320 -12.00600 -11.80179 -11.44760 -11.07006 -10.88144 -10.11208 -9.52088 -8.39978 -6.49638 -0.62618 0.29695 0.61721 1.34560 1.35372 1.38007 1.49179 1.73239 2.29287 2.58462 2.67352 2.93038 3.17413 3.22359 3.88455 3.89526 4.01880 4.25277 4.40764 4.52623 4.71590 4.76852 4.89549 4.99778 5.07653 5.18608 5.29382 5.32986 5.38525 5.67151 6.05863 6.50875 6.84725 7.12869 7.22073 8.76712 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.046618 B = 0.004460 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.479437 B = 6276.531074 C = 6512.120646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.016 3.984 3 Si 0.957 3.043 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.244 1.244 7 C -0.533 4.533 8 H 0.020 0.980 9 C 0.073 3.927 10 C 0.199 3.801 11 N -0.412 5.412 12 O 0.082 5.918 13 C 0.214 3.786 14 C -0.059 4.059 15 C -0.054 4.054 16 C -0.148 4.148 17 C 0.143 3.857 18 O -0.503 6.503 19 C -0.143 4.143 20 C -0.058 4.058 21 N -0.494 5.494 22 H 0.273 0.727 23 H 0.060 0.940 24 H 0.055 0.945 25 H 0.133 0.867 26 H 0.158 0.842 27 H 0.419 0.581 28 H 0.167 0.833 29 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.164 -17.112 -6.405 23.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.183 4.183 3 Si 0.778 3.222 4 H -0.182 1.182 5 H -0.200 1.200 6 H -0.167 1.167 7 C -0.572 4.572 8 H 0.038 0.962 9 C 0.035 3.965 10 C -0.073 4.073 11 N -0.121 5.121 12 O 0.023 5.977 13 C -0.003 4.003 14 C -0.061 4.061 15 C -0.074 4.074 16 C -0.167 4.167 17 C 0.097 3.903 18 O -0.318 6.318 19 C -0.162 4.162 20 C -0.078 4.078 21 N -0.228 5.228 22 H 0.082 0.918 23 H 0.078 0.922 24 H 0.073 0.927 25 H 0.150 0.850 26 H 0.176 0.824 27 H 0.280 0.720 28 H 0.184 0.816 29 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 14.329 -16.125 -5.848 22.350 hybrid contribution -0.870 0.510 0.059 1.010 sum 13.459 -15.615 -5.789 21.412 Atomic orbital electron populations 1.70032 1.08351 1.28874 1.50660 1.25961 0.95798 1.03521 0.93022 0.85572 0.79452 0.77265 0.79924 1.18180 1.20043 1.16737 1.20790 0.89607 0.93414 1.53375 0.96180 1.18070 0.95076 0.83675 0.99729 1.26072 0.97195 1.01124 0.82889 1.74533 1.20068 0.93272 1.24183 1.85280 1.61474 1.26535 1.24368 1.27012 0.95950 0.95295 0.82043 1.17438 1.07642 0.88922 0.92095 1.21175 0.95537 0.99474 0.91237 1.21539 1.00693 0.92507 1.01930 1.18787 0.93527 0.88039 0.89900 1.84719 1.39447 1.34665 1.72939 1.21586 1.01524 1.00005 0.93041 1.21349 0.94523 0.90188 1.01692 1.72068 1.18703 1.02409 1.29580 0.91764 0.92174 0.92737 0.84953 0.82418 0.72010 0.81557 0.82910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.36 13.96 21.45 0.30 -59.06 15 2 C 0.02 0.92 5.47 84.66 0.46 1.39 15 3 Si 0.96 43.64 27.47 68.60 1.88 45.52 15 4 H -0.26 -11.10 7.11 99.48 0.71 -10.39 15 5 H -0.28 -12.14 7.11 99.48 0.71 -11.44 15 6 H -0.24 -10.29 6.54 99.48 0.65 -9.64 15 7 C -0.53 -32.43 9.65 25.60 0.25 -32.18 15 8 H 0.02 1.38 7.98 -2.91 -0.02 1.35 15 9 C 0.07 3.75 4.67 29.10 0.14 3.89 15 10 C 0.20 9.68 7.39 138.53 1.02 10.70 15 11 N -0.41 -18.93 12.15 -58.52 -0.71 -19.64 15 12 O 0.08 3.16 11.13 69.45 0.77 3.93 15 13 C 0.21 7.74 8.00 87.24 0.70 8.44 15 14 C -0.06 -1.55 5.87 -20.09 -0.12 -1.66 15 15 C -0.05 -1.28 9.70 22.51 0.22 -1.06 15 16 C -0.15 -2.54 9.97 22.32 0.22 -2.31 15 17 C 0.14 2.11 6.71 22.61 0.15 2.26 15 18 O -0.50 -5.51 13.49 -91.13 -1.23 -6.74 15 19 C -0.14 -2.04 9.97 22.32 0.22 -1.82 15 20 C -0.06 -1.10 9.72 22.51 0.22 -0.88 15 21 N -0.49 -21.71 11.26 -302.69 -3.41 -25.12 15 22 H 0.27 15.83 8.31 -92.71 -0.77 15.06 15 23 H 0.06 2.89 7.57 -2.39 -0.02 2.87 15 24 H 0.05 2.67 7.20 -2.38 -0.02 2.66 15 25 H 0.13 3.41 7.87 -2.91 -0.02 3.39 15 26 H 0.16 2.01 8.06 -2.91 -0.02 1.99 15 27 H 0.42 0.42 9.06 -74.06 -0.67 -0.25 15 28 H 0.17 1.42 8.06 -2.91 -0.02 1.40 15 29 H 0.15 2.46 7.94 -2.91 -0.02 2.44 15 Total: -1.00 -76.46 269.38 1.56 -74.89 By element: Atomic # 1 Polarization: -1.03 SS G_CDS: 0.47 Total: -0.55 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: 3.48 Total: -13.24 kcal Atomic # 7 Polarization: -100.00 SS G_CDS: -3.82 Total: -103.81 kcal Atomic # 8 Polarization: -2.35 SS G_CDS: -0.46 Total: -2.81 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.88 Total: 45.52 kcal Total: -76.46 1.56 -74.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260870472.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.995 kcal (2) G-P(sol) polarization free energy of solvation -76.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds