Wall clock time and date at job start Mon Mar 30 2020 03:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99946 * 2 1 4 4 H 1.48505 * 109.47288 * 270.00212 * 3 2 1 5 5 H 1.48492 * 109.47358 * 30.00149 * 3 2 1 6 6 H 1.48501 * 109.47290 * 150.00444 * 3 2 1 7 7 C 1.37879 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00108 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99647 * 179.97438 * 7 2 1 10 10 C 1.50709 * 109.47033 * 179.97438 * 9 7 2 11 11 N 1.30042 * 126.18172 * 270.02613 * 10 9 7 12 12 O 1.21278 * 110.50813 * 179.70511 * 11 10 9 13 13 C 1.34235 * 109.68996 * 0.42733 * 12 11 10 14 14 C 1.47601 * 126.68781 * 179.83843 * 13 12 11 15 15 C 1.39639 * 120.18711 * 179.68633 * 14 13 12 16 16 C 1.37846 * 119.90911 * 180.02562 * 15 14 13 17 17 C 1.38495 * 120.28647 * 359.97438 * 16 15 14 18 18 C 1.38124 * 120.37510 * 0.02562 * 17 16 15 19 19 C 1.38630 * 120.08404 * 0.02562 * 18 17 16 20 20 O 1.35726 * 120.14308 * 179.97438 * 19 18 17 21 21 N 1.32211 * 106.62303 * 359.57879 * 13 12 11 22 22 H 0.96997 * 119.99843 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47813 * 59.99588 * 9 7 2 24 24 H 1.09003 * 109.47388 * 299.99363 * 9 7 2 25 25 H 1.07996 * 120.04670 * 0.04703 * 15 14 13 26 26 H 1.08003 * 119.86171 * 180.02562 * 16 15 14 27 27 H 1.08007 * 119.81454 * 179.74701 * 17 16 15 28 28 H 1.07995 * 119.95926 * 179.97438 * 18 17 16 29 29 H 0.96701 * 113.99740 * 269.99771 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0140 -2.6149 -0.0010 11 7 4.2699 -3.3386 1.0487 12 8 4.6537 -4.4414 0.7212 13 6 4.6898 -4.5285 -0.6179 14 6 5.1030 -5.7003 -1.4145 15 6 5.0821 -5.6437 -2.8096 16 6 5.4688 -6.7416 -3.5480 17 6 5.8789 -7.9017 -2.9122 18 6 5.9042 -7.9707 -1.5329 19 6 5.5176 -6.8760 -0.7752 20 8 5.5415 -6.9427 0.5802 21 7 4.2776 -3.3620 -1.0840 22 1 -0.4850 0.8400 0.0004 23 1 3.8753 -0.6803 0.8888 24 1 3.8746 -0.6800 -0.8912 25 1 4.7637 -4.7409 -3.3094 26 1 5.4526 -6.6969 -4.6270 27 1 6.1763 -8.7588 -3.4982 28 1 6.2248 -8.8787 -1.0441 29 1 4.7154 -7.2563 0.9732 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260872887.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:35 Heat of formation + Delta-G solvation = 49.933439 kcal Electronic energy + Delta-G solvation = -16683.212396 eV Core-core repulsion = 13768.031615 eV Total energy + Delta-G solvation = -2915.180781 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.84520 -39.88197 -36.87430 -35.51465 -33.56577 -32.52831 -30.57250 -29.92811 -29.02894 -24.41628 -23.99430 -22.67650 -22.03719 -20.50624 -18.50330 -17.64318 -17.31008 -16.70812 -16.24227 -15.66141 -15.53134 -14.52679 -14.31058 -13.94969 -13.28689 -12.76994 -12.53125 -12.31322 -12.19351 -11.93193 -11.59829 -11.40840 -10.83450 -10.81653 -10.64939 -10.35951 -10.31693 -9.73072 -9.36640 -9.01057 -8.66718 -8.48930 -6.15745 -4.17097 0.49625 1.04459 2.04283 2.99405 3.14464 3.25559 3.32642 3.34771 3.48808 3.96496 4.11045 4.34158 4.68617 4.79604 4.92293 5.03004 5.17213 5.23632 5.35112 5.59963 5.75319 6.05530 6.10390 6.19261 6.39115 6.51937 6.62165 6.82323 6.98463 7.44972 7.48906 8.35327 8.84075 8.87103 9.40813 10.97003 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.041226 B = 0.005110 C = 0.004842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.011885 B = 5477.777658 C = 5781.760943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.075 3.925 3 Si 0.879 3.121 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.518 4.518 8 H 0.072 0.928 9 C 0.067 3.933 10 C 0.222 3.778 11 N -0.395 5.395 12 O 0.085 5.915 13 C 0.189 3.811 14 C -0.041 4.041 15 C -0.052 4.052 16 C -0.133 4.133 17 C -0.085 4.085 18 C -0.150 4.150 19 C 0.141 3.859 20 O -0.487 6.487 21 N -0.464 5.464 22 H 0.267 0.733 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.145 0.855 26 H 0.134 0.866 27 H 0.131 0.869 28 H 0.136 0.864 29 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.976 -15.909 -5.534 20.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.128 4.128 3 Si 0.705 3.295 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.188 1.188 7 C -0.557 4.557 8 H 0.091 0.909 9 C 0.029 3.971 10 C -0.050 4.050 11 N -0.102 5.102 12 O 0.027 5.973 13 C -0.028 4.028 14 C -0.044 4.044 15 C -0.072 4.072 16 C -0.151 4.151 17 C -0.104 4.104 18 C -0.169 4.169 19 C 0.094 3.906 20 O -0.299 6.299 21 N -0.198 5.198 22 H 0.077 0.923 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.163 0.837 26 H 0.152 0.848 27 H 0.149 0.851 28 H 0.154 0.846 29 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 12.153 -14.933 -5.036 19.901 hybrid contribution -0.199 0.562 0.084 0.602 sum 11.954 -14.372 -4.951 19.338 Atomic orbital electron populations 1.69879 1.06228 1.27273 1.49746 1.24896 0.94830 0.98991 0.94071 0.86783 0.80401 0.83371 0.78904 1.19749 1.20856 1.18830 1.20683 0.87324 0.95076 1.52601 0.90936 1.18267 0.97898 0.81971 0.99010 1.26264 0.95832 1.01116 0.81827 1.74601 1.19111 0.92501 1.23971 1.85421 1.61119 1.27443 1.23349 1.26065 0.99039 0.94988 0.82745 1.17723 1.04908 0.89456 0.92302 1.21259 0.95292 0.99587 0.91041 1.21133 1.00572 0.92810 1.00541 1.21235 0.97162 0.98092 0.93944 1.21334 1.03164 0.98190 0.94163 1.18521 0.96860 0.91595 0.83596 1.84781 1.40779 1.89074 1.15227 1.72122 1.16668 1.01108 1.29901 0.92297 0.93479 0.93454 0.83747 0.84772 0.85074 0.84600 0.74474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.51 13.96 55.43 0.77 -26.73 15 2 C 0.07 2.19 5.47 -17.82 -0.10 2.09 15 3 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 15 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 15 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 6 H -0.26 -6.14 6.54 56.52 0.37 -5.77 15 7 C -0.52 -15.26 9.65 -34.44 -0.33 -15.59 15 8 H 0.07 2.36 7.98 -52.49 -0.42 1.94 15 9 C 0.07 1.72 4.67 -29.03 -0.14 1.59 15 10 C 0.22 5.34 7.39 -156.56 -1.16 4.18 15 11 N -0.39 -9.10 12.15 31.21 0.38 -8.73 15 12 O 0.09 1.69 10.00 -1.95 -0.02 1.67 15 13 C 0.19 3.55 7.96 -13.90 -0.11 3.44 15 14 C -0.04 -0.59 5.88 -104.86 -0.62 -1.21 15 15 C -0.05 -0.64 9.70 -39.20 -0.38 -1.02 15 16 C -0.13 -1.19 10.02 -39.63 -0.40 -1.59 15 17 C -0.09 -0.67 10.03 -39.53 -0.40 -1.07 15 18 C -0.15 -1.35 9.98 -39.48 -0.39 -1.74 15 19 C 0.14 1.68 6.72 -38.74 -0.26 1.42 15 20 O -0.49 -5.64 11.95 -37.40 -0.45 -6.09 15 21 N -0.46 -10.16 11.26 -10.18 -0.11 -10.27 15 22 H 0.27 7.61 8.31 -40.82 -0.34 7.27 15 23 H 0.05 1.18 7.20 -51.93 -0.37 0.80 15 24 H 0.05 1.16 7.57 -51.93 -0.39 0.76 15 25 H 0.14 1.84 7.88 -52.49 -0.41 1.43 15 26 H 0.13 0.86 8.06 -52.48 -0.42 0.44 15 27 H 0.13 0.64 8.06 -52.48 -0.42 0.22 15 28 H 0.14 0.91 8.06 -52.49 -0.42 0.49 15 29 H 0.40 3.00 9.06 45.56 0.41 3.41 15 LS Contribution 267.19 15.07 4.03 4.03 Total: -1.00 -34.34 267.19 -5.97 -40.31 By element: Atomic # 1 Polarization: 0.22 SS G_CDS: -1.62 Total: -1.40 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -4.28 Total: -9.49 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: 1.04 Total: -45.73 kcal Atomic # 8 Polarization: -3.95 SS G_CDS: -0.47 Total: -4.41 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -34.34 -5.97 -40.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260872887.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.248 kcal (2) G-P(sol) polarization free energy of solvation -34.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds