Wall clock time and date at job start Mon Mar 30 2020 03:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99946 * 2 1 4 4 H 1.48505 * 109.47288 * 270.00212 * 3 2 1 5 5 H 1.48492 * 109.47358 * 30.00149 * 3 2 1 6 6 H 1.48501 * 109.47290 * 150.00444 * 3 2 1 7 7 C 1.37879 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00108 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99647 * 179.97438 * 7 2 1 10 10 C 1.50709 * 109.47033 * 179.97438 * 9 7 2 11 11 N 1.30042 * 126.18172 * 270.02613 * 10 9 7 12 12 O 1.21278 * 110.50813 * 179.70511 * 11 10 9 13 13 C 1.34235 * 109.68996 * 0.42733 * 12 11 10 14 14 C 1.47601 * 126.68781 * 179.83843 * 13 12 11 15 15 C 1.39639 * 120.18711 * 179.68633 * 14 13 12 16 16 C 1.37846 * 119.90911 * 180.02562 * 15 14 13 17 17 C 1.38495 * 120.28647 * 359.97438 * 16 15 14 18 18 C 1.38124 * 120.37510 * 0.02562 * 17 16 15 19 19 C 1.38630 * 120.08404 * 0.02562 * 18 17 16 20 20 O 1.35726 * 120.14308 * 179.97438 * 19 18 17 21 21 N 1.32211 * 106.62303 * 359.57879 * 13 12 11 22 22 H 0.96997 * 119.99843 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47813 * 59.99588 * 9 7 2 24 24 H 1.09003 * 109.47388 * 299.99363 * 9 7 2 25 25 H 1.07996 * 120.04670 * 0.04703 * 15 14 13 26 26 H 1.08003 * 119.86171 * 180.02562 * 16 15 14 27 27 H 1.08007 * 119.81454 * 179.74701 * 17 16 15 28 28 H 1.07995 * 119.95926 * 179.97438 * 18 17 16 29 29 H 0.96701 * 113.99740 * 269.99771 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4402 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0140 -2.6149 -0.0010 11 7 4.2699 -3.3386 1.0487 12 8 4.6537 -4.4414 0.7212 13 6 4.6898 -4.5285 -0.6179 14 6 5.1030 -5.7003 -1.4145 15 6 5.0821 -5.6437 -2.8096 16 6 5.4688 -6.7416 -3.5480 17 6 5.8789 -7.9017 -2.9122 18 6 5.9042 -7.9707 -1.5329 19 6 5.5176 -6.8760 -0.7752 20 8 5.5415 -6.9427 0.5802 21 7 4.2776 -3.3620 -1.0840 22 1 -0.4850 0.8400 0.0004 23 1 3.8753 -0.6803 0.8888 24 1 3.8746 -0.6800 -0.8912 25 1 4.7637 -4.7409 -3.3094 26 1 5.4526 -6.6969 -4.6270 27 1 6.1763 -8.7588 -3.4982 28 1 6.2248 -8.8787 -1.0441 29 1 4.7154 -7.2563 0.9732 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260872887.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:35 Heat of formation + Delta-G solvation = 23.658658 kcal Electronic energy + Delta-G solvation = -16684.351756 eV Core-core repulsion = 13768.031615 eV Total energy + Delta-G solvation = -2916.320141 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -46.51551 -40.73911 -37.76764 -37.19204 -35.37351 -34.29333 -31.81955 -31.24066 -30.52740 -26.08700 -25.53183 -23.89486 -23.26803 -21.96454 -19.52467 -19.45027 -18.77916 -18.59058 -17.49821 -16.64556 -16.48433 -16.40768 -15.39099 -15.17846 -14.82056 -14.33915 -14.12948 -13.67006 -13.53985 -13.29036 -13.13468 -12.64161 -12.57644 -12.48661 -12.10890 -12.06788 -11.81899 -11.56904 -11.15368 -10.89271 -9.87862 -9.60270 -8.41227 -6.50989 -0.59081 0.26273 0.66573 1.34121 1.36287 1.37642 1.48258 1.76503 2.28309 2.61925 2.66103 2.91727 3.13619 3.19656 3.90974 3.92981 4.17099 4.34881 4.41181 4.51256 4.70919 4.77525 4.88974 4.97682 5.07562 5.28802 5.32340 5.34823 5.45333 5.79457 6.04734 6.49274 6.71145 7.11604 7.22769 8.75568 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.041226 B = 0.005110 C = 0.004842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.011885 B = 5477.777658 C = 5781.760943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.017 3.983 3 Si 0.957 3.043 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.245 1.245 7 C -0.534 4.534 8 H 0.020 0.980 9 C 0.075 3.925 10 C 0.196 3.804 11 N -0.416 5.416 12 O 0.092 5.908 13 C 0.212 3.788 14 C -0.087 4.087 15 C -0.063 4.063 16 C -0.127 4.127 17 C -0.060 4.060 18 C -0.145 4.145 19 C 0.141 3.859 20 O -0.502 6.502 21 N -0.495 5.495 22 H 0.274 0.726 23 H 0.054 0.946 24 H 0.060 0.940 25 H 0.129 0.871 26 H 0.165 0.835 27 H 0.176 0.824 28 H 0.166 0.834 29 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.254 -17.432 -6.884 23.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.182 4.182 3 Si 0.778 3.222 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.169 1.169 7 C -0.573 4.573 8 H 0.038 0.962 9 C 0.036 3.964 10 C -0.076 4.076 11 N -0.124 5.124 12 O 0.033 5.967 13 C -0.004 4.004 14 C -0.090 4.090 15 C -0.083 4.083 16 C -0.145 4.145 17 C -0.079 4.079 18 C -0.163 4.163 19 C 0.094 3.906 20 O -0.316 6.316 21 N -0.229 5.229 22 H 0.083 0.917 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.147 0.853 26 H 0.183 0.817 27 H 0.193 0.807 28 H 0.184 0.816 29 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 14.429 -16.478 -6.392 22.817 hybrid contribution -0.904 0.711 0.413 1.222 sum 13.526 -15.767 -5.978 21.617 Atomic orbital electron populations 1.70026 1.08331 1.28918 1.50621 1.25947 0.95793 1.03480 0.92956 0.85575 0.79428 0.77281 0.79963 1.18094 1.19911 1.16879 1.20784 0.89544 0.93457 1.53469 0.96179 1.18062 0.95139 0.83582 0.99641 1.26095 0.97346 1.01192 0.82950 1.74526 1.20064 0.93429 1.24355 1.85357 1.61046 1.26223 1.24118 1.26917 0.96002 0.95306 0.82190 1.18018 1.08958 0.89080 0.92918 1.21324 0.96041 1.00553 0.90392 1.21497 0.99162 0.91869 1.01929 1.21793 0.93779 0.98588 0.93726 1.21697 1.01906 0.97990 0.94685 1.18747 0.96516 0.91516 0.83823 1.84732 1.42012 1.89343 1.15491 1.72062 1.18884 1.02385 1.29548 0.91710 0.92840 0.92237 0.85333 0.81729 0.80666 0.81615 0.72732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.70 13.96 21.45 0.30 -59.40 15 2 C 0.02 1.01 5.47 84.65 0.46 1.47 15 3 Si 0.96 44.10 27.47 68.60 1.88 45.99 15 4 H -0.26 -11.16 7.11 99.48 0.71 -10.46 15 5 H -0.27 -12.17 7.11 99.48 0.71 -11.47 15 6 H -0.25 -10.53 6.54 99.48 0.65 -9.88 15 7 C -0.53 -32.90 9.65 25.60 0.25 -32.65 15 8 H 0.02 1.39 7.98 -2.91 -0.02 1.37 15 9 C 0.07 3.90 4.67 29.10 0.14 4.04 15 10 C 0.20 9.86 7.39 138.53 1.02 10.89 15 11 N -0.42 -19.94 12.15 -58.52 -0.71 -20.65 15 12 O 0.09 3.77 10.00 87.03 0.87 4.64 15 13 C 0.21 8.22 7.96 87.22 0.69 8.91 15 14 C -0.09 -2.47 5.88 -20.02 -0.12 -2.59 15 15 C -0.06 -1.50 9.70 22.52 0.22 -1.28 15 16 C -0.13 -1.83 10.02 22.24 0.22 -1.61 15 17 C -0.06 -0.64 10.03 22.30 0.22 -0.41 15 18 C -0.14 -2.00 9.98 22.34 0.22 -1.77 15 19 C 0.14 3.10 6.72 22.82 0.15 3.25 15 20 O -0.50 -11.05 11.95 -72.79 -0.87 -11.92 15 21 N -0.50 -22.64 11.26 -302.70 -3.41 -26.05 15 22 H 0.27 15.93 8.31 -92.71 -0.77 15.16 15 23 H 0.05 2.69 7.20 -2.39 -0.02 2.67 15 24 H 0.06 2.92 7.57 -2.39 -0.02 2.91 15 25 H 0.13 3.38 7.88 -2.91 -0.02 3.35 15 26 H 0.17 1.37 8.06 -2.91 -0.02 1.35 15 27 H 0.18 0.44 8.06 -2.91 -0.02 0.41 15 28 H 0.17 1.35 8.06 -2.91 -0.02 1.33 15 29 H 0.41 5.90 9.06 -74.06 -0.67 5.22 15 Total: -1.00 -79.18 267.19 2.02 -77.15 By element: Atomic # 1 Polarization: 1.51 SS G_CDS: 0.47 Total: 1.98 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: 3.49 Total: -11.75 kcal Atomic # 7 Polarization: -102.28 SS G_CDS: -3.82 Total: -106.10 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: 0.00 Total: -7.28 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.88 Total: 45.99 kcal Total: -79.18 2.02 -77.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260872887.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.811 kcal (2) G-P(sol) polarization free energy of solvation -79.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds