Wall clock time and date at job start Mon Mar 30 2020 04:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99706 * 2 1 4 4 H 1.48498 * 109.46844 * 269.71994 * 3 2 1 5 5 H 1.48489 * 109.47455 * 29.72270 * 3 2 1 6 6 H 1.48505 * 109.47163 * 149.72741 * 3 2 1 7 7 C 1.37881 * 119.99940 * 179.72034 * 2 1 3 8 8 H 1.08001 * 119.99498 * 180.27522 * 7 2 1 9 9 C 1.50701 * 119.99903 * 0.27885 * 7 2 1 10 10 C 1.50704 * 109.46797 * 179.97438 * 9 7 2 11 11 N 1.30753 * 126.36211 * 84.34011 * 10 9 7 12 12 N 1.28428 * 110.64405 * 179.97438 * 11 10 9 13 13 N 1.28949 * 110.19408 * 359.97438 * 12 11 10 14 14 N 1.35039 * 126.35991 * 264.02480 * 10 9 7 15 15 C 1.40339 * 127.38385 * 0.02562 * 14 10 9 16 16 C 1.38715 * 120.08832 * 47.89525 * 15 14 10 17 17 C 1.38166 * 119.98866 * 179.67396 * 16 15 14 18 18 C 1.38308 * 120.16888 * 0.62299 * 17 16 15 19 19 C 1.38194 * 120.17342 * 359.67338 * 18 17 16 20 20 C 1.38605 * 120.01306 * 0.02562 * 19 18 17 21 21 O 1.35927 * 120.08686 * 180.02562 * 20 19 18 22 22 H 0.97007 * 120.00057 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46727 * 299.99250 * 9 7 2 24 24 H 1.08996 * 109.47096 * 59.99998 * 9 7 2 25 25 H 1.08003 * 120.00527 * 359.97293 * 16 15 14 26 26 H 1.08004 * 119.91863 * 180.31470 * 17 16 15 27 27 H 1.07991 * 119.91402 * 179.70104 * 18 17 16 28 28 H 1.08003 * 119.99152 * 180.02562 * 19 18 17 29 29 H 0.96705 * 113.99878 * 269.97050 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.5024 2.0430 -1.4001 5 1 1.4436 2.6543 0.6941 6 1 3.5438 1.4419 0.7058 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1940 0.0103 9 6 1.2510 -2.4992 0.0058 10 6 2.2304 -3.6446 0.0121 11 7 2.8090 -4.1640 1.0633 12 7 3.5873 -5.1270 0.7223 13 7 3.5605 -5.2893 -0.5567 14 7 2.6687 -4.3291 -1.0662 15 6 2.3123 -4.1243 -2.4081 16 6 2.3245 -2.8446 -2.9433 17 6 1.9798 -2.6462 -4.2665 18 6 1.6096 -3.7192 -5.0568 19 6 1.5892 -4.9962 -4.5289 20 6 1.9396 -5.2045 -3.2042 21 8 1.9205 -6.4600 -2.6836 22 1 -0.4850 -0.8401 0.0004 23 1 0.6207 -2.5547 0.8934 24 1 0.6281 -2.5591 -0.8866 25 1 2.6081 -2.0041 -2.3272 26 1 1.9946 -1.6500 -4.6835 27 1 1.3363 -3.5588 -6.0891 28 1 1.3000 -5.8320 -5.1488 29 1 1.0725 -6.7105 -2.2920 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260874680.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:34 Heat of formation + Delta-G solvation = 93.011427 kcal Electronic energy + Delta-G solvation = -17399.497192 eV Core-core repulsion = 14518.477164 eV Total energy + Delta-G solvation = -2881.020028 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.51699 -39.79539 -36.77409 -34.95308 -33.92138 -31.82962 -30.35127 -29.49021 -28.09006 -24.36031 -23.56088 -22.94229 -21.68927 -20.73247 -18.62059 -17.76505 -17.15826 -16.26350 -15.67621 -15.27977 -14.70938 -14.36154 -13.85678 -13.78859 -13.37264 -12.87292 -12.49227 -12.25585 -12.00887 -11.87483 -11.54005 -11.03414 -10.99681 -10.82527 -10.45336 -10.26826 -10.20016 -9.79657 -8.92196 -8.87649 -8.66865 -8.57997 -6.70147 -4.45759 0.79390 1.18250 1.78497 2.34844 2.97228 3.27970 3.34894 3.48868 3.50045 4.04832 4.30707 4.66676 4.85444 4.93567 5.04728 5.15782 5.26188 5.40272 5.52143 5.80140 5.88074 6.09275 6.16671 6.34236 6.38649 6.58438 6.64359 6.78117 7.01600 7.52468 7.60149 8.07032 8.47701 9.10629 9.24223 10.69364 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.020635 B = 0.009082 C = 0.006944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.602352 B = 3082.178294 C = 4031.351222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.031 3.969 3 Si 1.073 2.927 4 H -0.284 1.284 5 H -0.280 1.280 6 H -0.285 1.285 7 C -0.602 4.602 8 H 0.056 0.944 9 C 0.076 3.924 10 C 0.303 3.697 11 N -0.345 5.345 12 N -0.054 5.054 13 N -0.091 5.091 14 N -0.342 5.342 15 C 0.107 3.893 16 C -0.079 4.079 17 C -0.113 4.113 18 C -0.095 4.095 19 C -0.142 4.142 20 C 0.122 3.878 21 O -0.484 6.484 22 H 0.271 0.729 23 H 0.056 0.944 24 H 0.040 0.960 25 H 0.160 0.840 26 H 0.139 0.861 27 H 0.133 0.867 28 H 0.137 0.863 29 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.417 -5.457 -10.845 12.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.176 4.176 3 Si 0.900 3.100 4 H -0.211 1.211 5 H -0.205 1.205 6 H -0.211 1.211 7 C -0.641 4.641 8 H 0.074 0.926 9 C 0.035 3.965 10 C 0.029 3.971 11 N -0.196 5.196 12 N -0.049 5.049 13 N -0.076 5.076 14 N -0.134 5.134 15 C 0.015 3.985 16 C -0.099 4.099 17 C -0.132 4.132 18 C -0.113 4.113 19 C -0.161 4.161 20 C 0.075 3.925 21 O -0.293 6.293 22 H 0.081 0.919 23 H 0.074 0.926 24 H 0.057 0.943 25 H 0.178 0.822 26 H 0.156 0.844 27 H 0.151 0.849 28 H 0.154 0.846 29 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 0.853 -4.804 -10.287 11.385 hybrid contribution -0.724 -1.301 -0.354 1.530 sum 0.129 -6.105 -10.641 12.268 Atomic orbital electron populations 1.70795 1.06802 1.30821 1.44534 1.25891 0.96287 1.02537 0.92837 0.83465 0.74907 0.74560 0.77100 1.21062 1.20514 1.21125 1.21670 0.94488 0.89645 1.58325 0.92584 1.18342 0.91166 0.87367 0.99593 1.26817 0.95294 0.93946 0.81084 1.74485 1.11617 1.08482 1.25012 1.77914 1.12420 1.09942 1.04595 1.82624 1.10037 1.10130 1.04770 1.48718 1.32413 1.25773 1.06458 1.17921 1.05362 0.94547 0.80701 1.21658 0.96360 0.95879 0.95991 1.21139 0.99351 0.99872 0.92800 1.21201 0.98030 0.91875 1.00217 1.21267 1.02490 0.98206 0.94125 1.18307 0.98996 0.83460 0.91711 1.84888 1.38849 1.27275 1.78275 0.91858 0.92593 0.94252 0.82218 0.84353 0.84896 0.84556 0.75573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.25 13.65 55.43 0.76 -23.49 15 2 C 0.03 0.79 5.46 -17.82 -0.10 0.69 15 3 Si 1.07 23.05 29.90 -169.99 -5.08 17.97 15 4 H -0.28 -5.75 7.11 56.52 0.40 -5.35 15 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 15 6 H -0.29 -6.04 7.11 56.52 0.40 -5.64 15 7 C -0.60 -15.35 7.68 -34.44 -0.26 -15.61 15 8 H 0.06 1.48 7.74 -52.49 -0.41 1.08 15 9 C 0.08 1.77 4.06 -29.03 -0.12 1.65 15 10 C 0.30 6.92 7.18 -155.21 -1.11 5.80 15 11 N -0.35 -8.30 12.15 32.75 0.40 -7.90 15 12 N -0.05 -1.24 13.39 60.35 0.81 -0.43 15 13 N -0.09 -2.00 13.39 60.35 0.81 -1.20 15 14 N -0.34 -7.16 3.55 -7.87 -0.03 -7.19 15 15 C 0.11 1.92 6.03 -83.40 -0.50 1.42 15 16 C -0.08 -1.33 8.62 -39.43 -0.34 -1.66 15 17 C -0.11 -1.47 10.04 -39.58 -0.40 -1.87 15 18 C -0.09 -1.04 10.04 -39.57 -0.40 -1.43 15 19 C -0.14 -1.68 9.98 -39.46 -0.39 -2.07 15 20 C 0.12 1.85 6.71 -39.06 -0.26 1.59 15 21 O -0.48 -7.07 12.80 -19.51 -0.25 -7.32 15 22 H 0.27 7.22 7.22 -40.82 -0.29 6.93 15 23 H 0.06 1.37 8.00 -51.93 -0.42 0.95 15 24 H 0.04 0.90 7.11 -51.93 -0.37 0.53 15 25 H 0.16 3.06 6.32 -52.48 -0.33 2.73 15 26 H 0.14 1.50 8.06 -52.48 -0.42 1.08 15 27 H 0.13 1.01 8.06 -52.49 -0.42 0.59 15 28 H 0.14 1.25 8.06 -52.48 -0.42 0.83 15 29 H 0.39 4.11 9.06 45.56 0.41 4.53 15 LS Contribution 265.59 15.07 4.00 4.00 Total: -1.00 -30.51 265.59 -3.94 -34.45 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -1.47 Total: 2.61 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -3.89 Total: -11.50 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 2.74 Total: -40.21 kcal Atomic # 8 Polarization: -7.07 SS G_CDS: -0.25 Total: -7.32 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.08 Total: 17.97 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.51 -3.94 -34.45 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260874680.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.466 kcal (2) G-P(sol) polarization free energy of solvation -30.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds