Wall clock time and date at job start Mon Mar 30 2020 04:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 119.99706 * 2 1 4 4 H 1.48498 * 109.46844 * 269.71994 * 3 2 1 5 5 H 1.48489 * 109.47455 * 29.72270 * 3 2 1 6 6 H 1.48505 * 109.47163 * 149.72741 * 3 2 1 7 7 C 1.37881 * 119.99940 * 179.72034 * 2 1 3 8 8 H 1.08001 * 119.99498 * 180.27522 * 7 2 1 9 9 C 1.50701 * 119.99903 * 0.27885 * 7 2 1 10 10 C 1.50704 * 109.46797 * 179.97438 * 9 7 2 11 11 N 1.30753 * 126.36211 * 84.34011 * 10 9 7 12 12 N 1.28428 * 110.64405 * 179.97438 * 11 10 9 13 13 N 1.28949 * 110.19408 * 359.97438 * 12 11 10 14 14 N 1.35039 * 126.35991 * 264.02480 * 10 9 7 15 15 C 1.40339 * 127.38385 * 0.02562 * 14 10 9 16 16 C 1.38715 * 120.08832 * 47.89525 * 15 14 10 17 17 C 1.38166 * 119.98866 * 179.67396 * 16 15 14 18 18 C 1.38308 * 120.16888 * 0.62299 * 17 16 15 19 19 C 1.38194 * 120.17342 * 359.67338 * 18 17 16 20 20 C 1.38605 * 120.01306 * 0.02562 * 19 18 17 21 21 O 1.35927 * 120.08686 * 180.02562 * 20 19 18 22 22 H 0.97007 * 120.00057 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46727 * 299.99250 * 9 7 2 24 24 H 1.08996 * 109.47096 * 59.99998 * 9 7 2 25 25 H 1.08003 * 120.00527 * 359.97293 * 16 15 14 26 26 H 1.08004 * 119.91863 * 180.31470 * 17 16 15 27 27 H 1.07991 * 119.91402 * 179.70104 * 18 17 16 28 28 H 1.08003 * 119.99152 * 180.02562 * 19 18 17 29 29 H 0.96705 * 113.99878 * 269.97050 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.5024 2.0430 -1.4001 5 1 1.4436 2.6543 0.6941 6 1 3.5438 1.4419 0.7058 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1940 0.0103 9 6 1.2510 -2.4992 0.0058 10 6 2.2304 -3.6446 0.0121 11 7 2.8090 -4.1640 1.0633 12 7 3.5873 -5.1270 0.7223 13 7 3.5605 -5.2893 -0.5567 14 7 2.6687 -4.3291 -1.0662 15 6 2.3123 -4.1243 -2.4081 16 6 2.3245 -2.8446 -2.9433 17 6 1.9798 -2.6462 -4.2665 18 6 1.6096 -3.7192 -5.0568 19 6 1.5892 -4.9962 -4.5289 20 6 1.9396 -5.2045 -3.2042 21 8 1.9205 -6.4600 -2.6836 22 1 -0.4850 -0.8401 0.0004 23 1 0.6207 -2.5547 0.8934 24 1 0.6281 -2.5591 -0.8866 25 1 2.6081 -2.0041 -2.3272 26 1 1.9946 -1.6500 -4.6835 27 1 1.3363 -3.5588 -6.0891 28 1 1.3000 -5.8320 -5.1488 29 1 1.0725 -6.7105 -2.2920 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260874680.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:34 Heat of formation + Delta-G solvation = 71.607648 kcal Electronic energy + Delta-G solvation = -17400.425330 eV Core-core repulsion = 14518.477164 eV Total energy + Delta-G solvation = -2881.948166 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.24834 -40.95014 -37.90338 -36.60070 -35.69647 -33.67937 -31.51783 -30.80728 -29.87499 -26.04015 -25.33899 -24.21204 -23.05189 -22.37493 -19.88024 -19.30185 -18.84587 -17.76760 -16.81030 -16.67487 -16.27806 -15.69283 -15.58585 -15.11274 -14.95871 -14.65198 -13.96002 -13.71220 -13.47069 -13.26385 -12.95415 -12.83895 -12.51959 -12.34578 -12.11092 -11.95707 -11.64053 -11.59359 -10.78728 -10.63857 -10.02939 -9.76344 -8.77167 -6.52939 -0.55264 0.10693 0.27270 0.78313 1.15984 1.55707 1.62894 1.81982 2.42007 2.51037 2.97992 3.01005 3.11963 3.45467 3.71242 3.93097 4.11625 4.21384 4.28639 4.37362 4.44794 4.68956 4.80598 4.86363 5.13483 5.17532 5.32732 5.40899 5.61580 5.72681 5.97961 6.40896 6.52631 7.22742 7.32828 8.63677 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.020635 B = 0.009082 C = 0.006944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.602352 B = 3082.178294 C = 4031.351222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.005 4.005 3 Si 1.113 2.887 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.284 1.284 7 C -0.606 4.606 8 H 0.039 0.961 9 C 0.089 3.911 10 C 0.289 3.711 11 N -0.367 5.367 12 N -0.067 5.067 13 N -0.092 5.092 14 N -0.324 5.324 15 C 0.057 3.943 16 C -0.099 4.099 17 C -0.112 4.112 18 C -0.069 4.069 19 C -0.129 4.129 20 C 0.118 3.882 21 O -0.497 6.497 22 H 0.263 0.737 23 H 0.040 0.960 24 H 0.046 0.954 25 H 0.128 0.872 26 H 0.162 0.838 27 H 0.182 0.818 28 H 0.173 0.827 29 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.742 -5.395 -13.838 14.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.207 4.207 3 Si 0.934 3.066 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.209 1.209 7 C -0.645 4.645 8 H 0.058 0.942 9 C 0.049 3.951 10 C 0.014 3.986 11 N -0.219 5.219 12 N -0.062 5.062 13 N -0.077 5.077 14 N -0.115 5.115 15 C -0.034 4.034 16 C -0.120 4.120 17 C -0.130 4.130 18 C -0.087 4.087 19 C -0.148 4.148 20 C 0.071 3.929 21 O -0.308 6.308 22 H 0.073 0.927 23 H 0.058 0.942 24 H 0.064 0.936 25 H 0.146 0.854 26 H 0.179 0.821 27 H 0.199 0.801 28 H 0.191 0.809 29 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 0.516 -4.768 -13.304 14.142 hybrid contribution -0.646 -1.401 0.410 1.596 sum -0.130 -6.169 -12.893 14.294 Atomic orbital electron populations 1.70889 1.07475 1.30439 1.46195 1.27089 0.96314 1.05428 0.91832 0.82953 0.73811 0.71373 0.78424 1.18529 1.20428 1.20945 1.21744 0.93745 0.90839 1.58128 0.94229 1.18078 0.90980 0.87083 0.98965 1.26525 0.95846 0.94442 0.81768 1.74390 1.12273 1.09080 1.26146 1.77876 1.12939 1.10224 1.05117 1.82511 1.10046 1.10628 1.04486 1.48777 1.30893 1.24332 1.07479 1.18457 1.09018 0.96282 0.79653 1.21543 0.98366 0.94467 0.97618 1.21471 0.98365 1.01993 0.91188 1.21746 0.94616 0.90465 1.01838 1.21703 1.00547 0.99919 0.92603 1.18576 0.98926 0.82696 0.92669 1.84838 1.40420 1.26993 1.78593 0.92683 0.94164 0.93641 0.85435 0.82062 0.80056 0.80930 0.73773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.96 13.65 21.45 0.29 -49.67 15 2 C -0.01 -0.27 5.46 84.66 0.46 0.19 15 3 Si 1.11 46.11 29.90 68.60 2.05 48.16 15 4 H -0.26 -9.75 7.11 99.48 0.71 -9.05 15 5 H -0.28 -11.49 7.11 99.48 0.71 -10.78 15 6 H -0.28 -11.59 7.11 99.48 0.71 -10.88 15 7 C -0.61 -31.70 7.68 25.60 0.20 -31.50 15 8 H 0.04 2.17 7.74 -2.91 -0.02 2.14 15 9 C 0.09 4.34 4.06 29.10 0.12 4.46 15 10 C 0.29 13.67 7.18 138.06 0.99 14.66 15 11 N -0.37 -18.25 12.15 -50.30 -0.61 -18.87 15 12 N -0.07 -3.17 13.39 37.02 0.50 -2.67 15 13 N -0.09 -4.11 13.39 37.02 0.50 -3.62 15 14 N -0.32 -13.82 3.55 -178.80 -0.63 -14.46 15 15 C 0.06 2.04 6.03 38.14 0.23 2.27 15 16 C -0.10 -3.32 8.62 22.37 0.19 -3.12 15 17 C -0.11 -2.58 10.04 22.27 0.22 -2.36 15 18 C -0.07 -1.15 10.04 22.28 0.22 -0.93 15 19 C -0.13 -2.49 9.98 22.35 0.22 -2.27 15 20 C 0.12 3.35 6.71 22.61 0.15 3.50 15 21 O -0.50 -13.77 12.80 -92.72 -1.19 -14.95 15 22 H 0.26 14.34 7.22 -92.70 -0.67 13.67 15 23 H 0.04 2.06 8.00 -2.39 -0.02 2.04 15 24 H 0.05 2.14 7.11 -2.39 -0.02 2.12 15 25 H 0.13 5.06 6.32 -2.91 -0.02 5.04 15 26 H 0.16 2.93 8.06 -2.91 -0.02 2.91 15 27 H 0.18 1.42 8.06 -2.92 -0.02 1.39 15 28 H 0.17 2.14 8.06 -2.91 -0.02 2.12 15 29 H 0.40 8.03 9.06 -74.05 -0.67 7.36 15 Total: -1.00 -67.64 265.59 4.55 -63.09 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: 0.63 Total: 8.09 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: 3.01 Total: -15.11 kcal Atomic # 7 Polarization: -89.32 SS G_CDS: 0.04 Total: -89.28 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -1.19 Total: -14.95 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.05 Total: 48.16 kcal Total: -67.64 4.55 -63.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260874680.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.700 kcal (2) G-P(sol) polarization free energy of solvation -67.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds