Wall clock time and date at job start Mon Mar 30 2020 03:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31587 * 1 3 3 Si 1.86809 * 119.99838 * 2 1 4 4 H 1.48498 * 109.47015 * 240.00077 * 3 2 1 5 5 H 1.48499 * 109.46964 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47060 * 120.00252 * 3 2 1 7 7 C 1.38623 * 120.00139 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00059 * 179.97438 * 7 2 1 9 9 O 1.34794 * 119.99915 * 359.97438 * 7 2 1 10 10 C 1.36004 * 116.99745 * 180.02562 * 9 7 2 11 11 C 1.40316 * 126.08773 * 0.03386 * 10 9 7 12 12 N 1.30864 * 108.35100 * 179.71695 * 11 10 9 13 13 N 1.40063 * 108.40225 * 0.40236 * 12 11 10 14 14 C 1.40257 * 126.05316 * 179.85522 * 13 12 11 15 15 C 1.38732 * 120.08872 * 179.69187 * 14 13 12 16 16 C 1.38169 * 119.98812 * 179.97438 * 15 14 13 17 17 C 1.38305 * 120.16928 * 0.02562 * 16 15 14 18 18 C 1.38213 * 120.17765 * 359.97438 * 17 16 15 19 19 C 1.38590 * 120.01146 * 0.02562 * 18 17 16 20 20 O 1.35944 * 120.08169 * 179.97438 * 19 18 17 21 21 C 1.35868 * 126.08864 * 179.97438 * 10 9 7 22 22 H 0.96997 * 120.00175 * 359.97438 * 1 2 3 23 23 H 1.07997 * 125.83058 * 0.02562 * 11 10 9 24 24 H 1.07998 * 120.00604 * 359.97438 * 15 14 13 25 25 H 1.08002 * 119.91816 * 180.02562 * 16 15 14 26 26 H 1.07992 * 119.91096 * 179.70657 * 17 16 15 27 27 H 1.07997 * 119.99102 * 179.97438 * 18 17 16 28 28 H 0.96700 * 114.00206 * 270.02131 * 20 19 18 29 29 H 1.07999 * 126.23351 * 359.97438 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6178 0.0000 4 1 3.1036 1.6965 -1.2125 5 1 1.2848 2.7465 -0.0006 6 1 3.1036 1.6965 1.2125 7 6 2.0090 -1.2005 -0.0005 8 1 3.0891 -1.2005 -0.0010 9 8 1.3351 -2.3679 -0.0005 10 6 2.0759 -3.5084 -0.0005 11 6 3.4770 -3.5839 0.0001 12 7 3.8215 -4.8464 0.0060 13 7 2.6559 -5.6229 0.0000 14 6 2.5976 -7.0243 0.0006 15 6 1.3693 -7.6693 0.0006 16 6 1.3143 -9.0499 0.0007 17 6 2.4813 -9.7920 0.0013 18 6 3.7087 -9.1566 0.0013 19 6 3.7726 -7.7722 0.0012 20 8 4.9791 -7.1457 0.0017 21 6 1.5910 -4.7777 0.0000 22 1 -0.4850 0.8400 0.0004 23 1 4.1554 -2.7436 0.0011 24 1 0.4563 -7.0924 0.0006 25 1 0.3575 -9.5508 0.0002 26 1 2.4335 -10.8708 0.0061 27 1 4.6182 -9.7390 0.0021 28 1 5.3279 -6.9647 0.8853 29 1 0.5494 -5.0631 0.0008 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260876299.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:12 Heat of formation + Delta-G solvation = 49.353934 kcal Electronic energy + Delta-G solvation = -16693.722068 eV Core-core repulsion = 13778.516158 eV Total energy + Delta-G solvation = -2915.205910 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.90328 -39.27882 -36.88409 -36.46830 -32.93023 -32.07060 -30.01735 -29.22313 -27.82780 -25.04143 -23.13732 -22.69031 -20.61343 -19.98529 -18.62996 -17.78599 -16.84510 -16.04054 -15.48459 -15.31389 -14.76376 -14.52053 -14.04629 -14.00888 -13.50481 -13.30205 -12.86675 -12.24724 -12.05225 -11.98421 -11.62047 -11.43149 -10.97050 -10.75021 -10.45761 -10.18108 -9.82833 -9.46510 -8.82950 -8.79375 -8.17034 -6.97584 -6.32345 -3.91754 1.01740 1.21867 2.60442 2.85876 3.16080 3.19325 3.22520 3.62521 3.74371 4.04330 4.30483 4.66050 4.90735 5.10624 5.14050 5.26761 5.35897 5.50444 5.62149 5.83809 5.98744 6.06650 6.24452 6.40420 6.40862 6.54003 6.68560 7.20149 7.22721 7.65605 7.89616 8.05797 8.23471 9.11989 9.80866 10.86725 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.052388 B = 0.004896 C = 0.004486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.343269 B = 5717.928987 C = 6239.891957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.036 3.964 3 Si 0.939 3.061 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.272 1.272 7 C -0.385 4.385 8 H 0.081 0.919 9 O -0.175 6.175 10 C 0.042 3.958 11 C 0.004 3.996 12 N -0.260 5.260 13 N -0.325 5.325 14 C 0.171 3.829 15 C -0.142 4.142 16 C -0.098 4.098 17 C -0.137 4.137 18 C -0.121 4.121 19 C 0.086 3.914 20 O -0.473 6.473 21 C -0.079 4.079 22 H 0.268 0.732 23 H 0.188 0.812 24 H 0.134 0.866 25 H 0.130 0.870 26 H 0.126 0.874 27 H 0.131 0.869 28 H 0.384 0.616 29 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.752 -15.095 1.651 15.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.167 4.167 3 Si 0.764 3.236 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.197 1.197 7 C -0.462 4.462 8 H 0.098 0.902 9 O -0.079 6.079 10 C -0.016 4.016 11 C -0.186 4.186 12 N -0.080 5.080 13 N -0.108 5.108 14 C 0.075 3.925 15 C -0.163 4.163 16 C -0.117 4.117 17 C -0.156 4.156 18 C -0.140 4.140 19 C 0.038 3.962 20 O -0.282 6.282 21 C -0.215 4.215 22 H 0.077 0.923 23 H 0.205 0.795 24 H 0.152 0.848 25 H 0.148 0.852 26 H 0.144 0.856 27 H 0.149 0.851 28 H 0.240 0.760 29 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 5.193 -15.656 1.044 16.528 hybrid contribution -0.140 1.585 0.464 1.658 sum 5.053 -14.071 1.508 15.026 Atomic orbital electron populations 1.70029 1.05756 1.27355 1.47831 1.25149 0.95850 0.98427 0.97260 0.85817 0.78604 0.80172 0.78986 1.19702 1.20447 1.19710 1.21022 0.91103 0.80897 1.53160 0.90152 1.83985 1.31087 1.09759 1.83109 1.19239 0.89694 0.89011 1.03610 1.24352 0.96149 0.94798 1.03266 1.77310 1.06079 1.02294 1.22275 1.45013 1.04401 1.02449 1.58985 1.18021 0.94519 0.79399 1.00589 1.20802 0.95846 0.95016 1.04646 1.20928 0.98728 0.92639 0.99376 1.20947 0.91825 0.99924 1.02900 1.21276 0.98801 0.92762 1.01195 1.18065 0.84265 0.89818 1.04072 1.84902 1.31319 1.79101 1.32868 1.20970 0.93117 0.87945 1.19450 0.92255 0.79544 0.84777 0.85226 0.85601 0.85084 0.75994 0.81196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.87 13.67 55.48 0.76 -25.11 15 2 C 0.04 0.99 5.49 -17.51 -0.10 0.89 15 3 Si 0.94 20.72 29.55 -169.99 -5.02 15.69 15 4 H -0.27 -5.82 7.11 56.52 0.40 -5.41 15 5 H -0.28 -6.06 7.11 56.52 0.40 -5.65 15 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 15 7 C -0.38 -10.74 9.63 30.87 0.30 -10.44 15 8 H 0.08 2.04 5.95 -52.48 -0.31 1.73 15 9 O -0.18 -5.00 9.84 -0.64 -0.01 -5.00 15 10 C 0.04 1.01 6.93 -39.65 -0.27 0.74 15 11 C 0.00 0.08 11.06 -17.18 -0.19 -0.11 15 12 N -0.26 -5.40 10.60 30.72 0.33 -5.08 15 13 N -0.33 -6.46 3.82 -10.30 -0.04 -6.49 15 14 C 0.17 2.85 6.70 -83.43 -0.56 2.29 15 15 C -0.14 -1.94 9.46 -39.42 -0.37 -2.32 15 16 C -0.10 -1.06 10.04 -39.58 -0.40 -1.46 15 17 C -0.14 -1.40 10.04 -39.57 -0.40 -1.79 15 18 C -0.12 -1.42 9.98 -39.46 -0.39 -1.81 15 19 C 0.09 1.28 6.72 -39.06 -0.26 1.02 15 20 O -0.47 -7.20 11.57 -19.56 -0.23 -7.42 15 21 C -0.08 -1.66 10.86 -16.57 -0.18 -1.84 15 22 H 0.27 7.33 8.31 -40.82 -0.34 6.99 15 23 H 0.19 3.68 6.77 -52.49 -0.36 3.33 15 24 H 0.13 1.72 6.75 -52.49 -0.35 1.37 15 25 H 0.13 1.03 8.06 -52.49 -0.42 0.61 15 26 H 0.13 0.92 8.06 -52.49 -0.42 0.49 15 27 H 0.13 1.24 8.06 -52.49 -0.42 0.81 15 28 H 0.38 4.49 9.06 45.56 0.41 4.91 15 29 H 0.17 3.17 7.06 -52.49 -0.37 2.80 15 LS Contribution 265.36 15.07 4.00 4.00 Total: -1.00 -33.27 265.36 -4.42 -37.69 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -1.38 Total: 6.57 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -2.83 Total: -14.84 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 1.04 Total: -36.68 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -0.23 Total: -12.43 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -33.27 -4.42 -37.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260876299.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.042 kcal (2) G-P(sol) polarization free energy of solvation -33.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds