Wall clock time and date at job start Mon Mar 30 2020 03:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99790 * 2 1 4 4 H 1.48497 * 109.47056 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47251 * 300.00379 * 3 2 1 6 6 H 1.48503 * 109.46573 * 60.00017 * 3 2 1 7 7 C 1.37875 * 120.00608 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00365 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99701 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.47343 * 59.99661 * 9 7 2 11 11 N 1.46905 * 109.47075 * 299.99819 * 9 7 2 12 12 C 1.50697 * 109.47094 * 179.97438 * 9 7 2 13 13 C 1.34297 * 126.15958 * 124.99657 * 12 9 7 14 14 O 1.34805 * 107.13553 * 179.97438 * 13 12 9 15 15 C 1.33995 * 107.75669 * 0.02562 * 14 13 12 16 16 Br 1.89105 * 125.62762 * 179.97438 * 15 14 13 17 17 N 1.30355 * 108.73675 * 359.76190 * 15 14 13 18 18 H 0.96991 * 120.00497 * 359.97438 * 1 2 3 19 19 H 1.00901 * 110.99869 * 176.04968 * 11 9 7 20 20 H 1.00896 * 110.99543 * 300.00090 * 11 9 7 21 21 H 1.08002 * 126.42681 * 359.94957 * 13 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8902 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 1 0.6248 -2.5563 -0.8919 11 7 0.4062 -2.5778 1.1974 12 6 2.2305 -3.6445 -0.0027 13 6 2.2728 -4.6517 0.8846 14 8 3.2923 -5.4565 0.5236 15 6 3.8571 -4.9336 -0.5732 16 35 5.3349 -5.6590 -1.5038 17 7 3.2168 -3.8447 -0.8954 18 1 -0.4850 0.8399 0.0004 19 1 -0.1577 -3.4145 1.1881 20 1 0.9639 -2.5269 2.0367 21 1 1.6141 -4.7905 1.7291 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260881432.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:55 Heat of formation + Delta-G solvation = 36.470493 kcal Electronic energy + Delta-G solvation = -10728.703193 eV Core-core repulsion = 8460.244985 eV Total energy + Delta-G solvation = -2268.458208 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 245.974 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.87098 -35.55271 -33.62565 -32.08700 -31.34098 -28.26300 -26.31660 -23.10254 -21.78894 -20.14330 -17.11594 -16.74410 -16.06154 -14.74349 -14.51007 -14.36584 -13.67981 -12.93448 -12.21208 -11.69596 -11.48013 -10.89205 -10.83448 -10.76201 -10.37443 -10.12333 -9.82120 -9.26066 -8.49024 -8.19559 -7.40668 -5.89485 -4.02301 0.69188 1.68591 3.18343 3.34931 3.42907 3.48778 3.51384 4.50121 5.23311 5.45438 5.48290 5.74276 6.11398 6.21280 6.79472 7.27618 7.88452 7.93328 8.19201 8.52158 8.84581 9.08045 9.65440 11.15700 Molecular weight = 245.97amu Principal moments of inertia in cm(-1) A = 0.040701 B = 0.007175 C = 0.006295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.770577 B = 3901.678924 C = 4446.941239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.082 3.918 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.290 3.710 10 H 0.061 0.939 11 N -0.804 5.804 12 C 0.013 3.987 13 C -0.100 4.100 14 O -0.197 6.197 15 C 0.147 3.853 16 Br 0.100 6.900 17 N -0.413 5.413 18 H 0.256 0.744 19 H 0.299 0.701 20 H 0.321 0.679 21 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.154 -12.502 -0.463 14.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.125 4.125 3 Si 0.716 3.284 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.560 4.560 8 H 0.075 0.925 9 C 0.179 3.821 10 H 0.079 0.921 11 N -0.330 5.330 12 C -0.112 4.112 13 C -0.170 4.170 14 O -0.084 6.084 15 C -0.137 4.137 16 Br 0.180 6.820 17 N -0.146 5.146 18 H 0.066 0.934 19 H 0.110 0.890 20 H 0.133 0.867 21 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 8.328 -11.648 -1.550 14.403 hybrid contribution 0.568 -0.295 1.086 1.261 sum 8.896 -11.944 -0.464 14.900 Atomic orbital electron populations 1.70097 1.05661 1.25771 1.46960 1.24932 0.94689 0.98681 0.94153 0.86618 0.80302 0.84010 0.77473 1.19850 1.20998 1.21077 1.20759 0.92420 0.88899 1.53941 0.92478 1.17762 0.85993 0.87114 0.91197 0.92102 1.59248 1.27552 1.41964 1.04260 1.24442 0.97179 0.98983 0.90595 1.24818 0.94080 0.93481 1.04661 1.84421 1.38344 1.47546 1.38123 1.27545 1.00562 0.94959 0.90587 1.96819 1.31454 1.83185 1.70548 1.70638 1.05687 1.11660 1.26639 0.93413 0.88959 0.86668 0.77045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.51 12.77 55.43 0.71 -23.80 14 2 C 0.08 2.29 5.39 -17.82 -0.10 2.19 14 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 14 4 H -0.27 -6.67 7.11 56.52 0.40 -6.27 14 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 14 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 14 7 C -0.52 -14.48 8.70 -34.44 -0.30 -14.78 14 8 H 0.06 1.64 7.74 -52.49 -0.41 1.24 14 9 C 0.29 7.16 3.16 -70.01 -0.22 6.94 14 10 H 0.06 1.67 8.14 -51.93 -0.42 1.25 14 11 N -0.80 -17.69 7.99 -6.65 -0.05 -17.74 14 12 C 0.01 0.27 6.25 -82.80 -0.52 -0.24 14 13 C -0.10 -1.79 11.19 29.34 0.33 -1.47 14 14 O -0.20 -3.56 10.78 5.14 0.06 -3.50 14 15 C 0.15 2.75 8.90 52.14 0.46 3.21 14 16 Br 0.10 1.38 34.13 -68.01 -2.32 -0.94 14 17 N -0.41 -9.14 11.29 -9.57 -0.11 -9.25 14 18 H 0.26 7.04 8.31 -40.82 -0.34 6.71 14 19 H 0.30 5.59 8.67 -39.29 -0.34 5.25 14 20 H 0.32 6.64 8.74 -39.29 -0.34 6.30 14 21 H 0.21 2.96 7.60 -52.49 -0.40 2.56 14 LS Contribution 220.59 15.07 3.32 3.32 Total: -1.00 -30.53 220.59 -4.80 -35.34 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -1.05 Total: 4.14 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -0.34 Total: -4.14 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: 0.55 Total: -50.79 kcal Atomic # 8 Polarization: -3.56 SS G_CDS: 0.06 Total: -3.50 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 35 Polarization: 1.38 SS G_CDS: -2.32 Total: -0.94 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -30.53 -4.80 -35.34 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260881432.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.808 kcal (2) G-P(sol) polarization free energy of solvation -30.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds