Wall clock time and date at job start Mon Mar 30 2020 03:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99790 * 2 1 4 4 H 1.48497 * 109.47056 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47251 * 300.00379 * 3 2 1 6 6 H 1.48503 * 109.46573 * 60.00017 * 3 2 1 7 7 C 1.37875 * 120.00608 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00365 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99701 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.47343 * 59.99661 * 9 7 2 11 11 N 1.46905 * 109.47075 * 299.99819 * 9 7 2 12 12 C 1.50697 * 109.47094 * 179.97438 * 9 7 2 13 13 C 1.34297 * 126.15958 * 124.99657 * 12 9 7 14 14 O 1.34805 * 107.13553 * 179.97438 * 13 12 9 15 15 C 1.33995 * 107.75669 * 0.02562 * 14 13 12 16 16 Br 1.89105 * 125.62762 * 179.97438 * 15 14 13 17 17 N 1.30355 * 108.73675 * 359.76190 * 15 14 13 18 18 H 0.96991 * 120.00497 * 359.97438 * 1 2 3 19 19 H 1.00901 * 110.99869 * 176.04968 * 11 9 7 20 20 H 1.00896 * 110.99543 * 300.00090 * 11 9 7 21 21 H 1.08002 * 126.42681 * 359.94957 * 13 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8902 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0017 10 1 0.6248 -2.5563 -0.8919 11 7 0.4062 -2.5778 1.1974 12 6 2.2305 -3.6445 -0.0027 13 6 2.2728 -4.6517 0.8846 14 8 3.2923 -5.4565 0.5236 15 6 3.8571 -4.9336 -0.5732 16 35 5.3349 -5.6590 -1.5038 17 7 3.2168 -3.8447 -0.8954 18 1 -0.4850 0.8399 0.0004 19 1 -0.1577 -3.4145 1.1881 20 1 0.9639 -2.5269 2.0367 21 1 1.6141 -4.7905 1.7291 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260881432.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:55 Heat of formation + Delta-G solvation = 11.223129 kcal Electronic energy + Delta-G solvation = -10729.798001 eV Core-core repulsion = 8460.244985 eV Total energy + Delta-G solvation = -2269.553016 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 245.974 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -44.37191 -37.29162 -35.30730 -33.79688 -32.98612 -29.79809 -28.30314 -24.93636 -23.29577 -21.83382 -18.70492 -18.56746 -17.72833 -16.61515 -16.27527 -15.90904 -15.34167 -14.67609 -14.12556 -13.54521 -12.88395 -12.76546 -12.66635 -12.07660 -12.01606 -11.93557 -11.60394 -11.19768 -10.57415 -9.78395 -9.14343 -8.00588 -6.19571 -0.65341 0.23258 1.42125 1.43802 1.53789 1.61229 2.07969 2.48090 3.22866 3.82831 3.88692 4.29116 4.45666 4.69087 5.13785 5.31359 5.75969 6.10131 6.41346 6.71066 7.02507 7.21219 7.51403 9.03762 Molecular weight = 245.97amu Principal moments of inertia in cm(-1) A = 0.040701 B = 0.007175 C = 0.006295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.770577 B = 3901.678924 C = 4446.941239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.038 3.962 3 Si 0.948 3.052 4 H -0.277 1.277 5 H -0.280 1.280 6 H -0.276 1.276 7 C -0.536 4.536 8 H 0.039 0.961 9 C 0.299 3.701 10 H 0.021 0.979 11 N -0.810 5.810 12 C -0.029 4.029 13 C -0.065 4.065 14 O -0.189 6.189 15 C 0.145 3.855 16 Br 0.145 6.855 17 N -0.456 5.456 18 H 0.258 0.742 19 H 0.321 0.679 20 H 0.331 0.669 21 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.930 -13.286 0.287 16.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.166 4.166 3 Si 0.774 3.226 4 H -0.202 1.202 5 H -0.206 1.206 6 H -0.202 1.202 7 C -0.575 4.575 8 H 0.057 0.943 9 C 0.188 3.812 10 H 0.039 0.961 11 N -0.339 5.339 12 C -0.153 4.153 13 C -0.136 4.136 14 O -0.076 6.076 15 C -0.139 4.139 16 Br 0.224 6.776 17 N -0.189 5.189 18 H 0.067 0.933 19 H 0.134 0.866 20 H 0.144 0.856 21 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 9.101 -12.437 -0.795 15.432 hybrid contribution 0.399 -0.166 0.809 0.917 sum 9.500 -12.603 0.014 15.783 Atomic orbital electron populations 1.70190 1.06745 1.26515 1.47915 1.25596 0.95488 1.01596 0.93952 0.85685 0.78765 0.80379 0.77725 1.20176 1.20611 1.20180 1.20963 0.91779 0.90877 1.53842 0.94308 1.17211 0.86055 0.87316 0.90624 0.96147 1.58927 1.27680 1.43632 1.03638 1.23982 0.98228 1.00103 0.92947 1.25361 0.93104 0.91362 1.03785 1.84466 1.38120 1.47158 1.37825 1.28163 1.01053 0.94193 0.90464 1.96861 1.28779 1.82247 1.69687 1.70511 1.06847 1.13649 1.27907 0.93333 0.86621 0.85631 0.73097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.96 12.77 21.45 0.27 -50.68 14 2 C 0.04 2.10 5.39 84.65 0.46 2.56 14 3 Si 0.95 44.61 29.54 68.60 2.03 46.64 14 4 H -0.28 -13.02 7.11 99.48 0.71 -12.32 14 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 14 6 H -0.28 -12.54 7.11 99.48 0.71 -11.84 14 7 C -0.54 -30.21 8.70 25.60 0.22 -29.99 14 8 H 0.04 2.28 7.74 -2.91 -0.02 2.25 14 9 C 0.30 14.97 3.16 43.42 0.14 15.10 14 10 H 0.02 1.18 8.14 -2.39 -0.02 1.16 14 11 N -0.81 -35.12 7.99 -174.95 -1.40 -36.52 14 12 C -0.03 -1.25 6.25 41.24 0.26 -0.99 14 13 C -0.07 -2.20 11.19 66.92 0.75 -1.45 14 14 O -0.19 -6.36 10.78 -4.53 -0.05 -6.41 14 15 C 0.14 5.20 8.90 130.46 1.16 6.36 14 16 Br 0.14 3.73 34.13 -20.37 -0.70 3.03 14 17 N -0.46 -20.11 11.29 -298.91 -3.37 -23.48 14 18 H 0.26 14.21 8.31 -92.71 -0.77 13.44 14 19 H 0.32 11.53 8.67 -89.69 -0.78 10.75 14 20 H 0.33 13.24 8.74 -89.70 -0.78 12.45 14 21 H 0.25 6.09 7.60 -2.91 -0.02 6.07 14 Total: -1.00 -65.57 220.59 -0.51 -66.07 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -0.28 Total: 9.75 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: 2.98 Total: -8.41 kcal Atomic # 7 Polarization: -106.18 SS G_CDS: -4.50 Total: -110.68 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -0.05 Total: -6.41 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 35 Polarization: 3.73 SS G_CDS: -0.70 Total: 3.03 kcal Total: -65.57 -0.51 -66.07 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260881432.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.298 kcal (2) G-P(sol) polarization free energy of solvation -65.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds