Wall clock time and date at job start Mon Mar 30 2020 03:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99882 * 2 1 4 4 H 1.48499 * 109.46626 * 269.99322 * 3 2 1 5 5 H 1.48495 * 109.47274 * 29.99474 * 3 2 1 6 6 H 1.48506 * 109.47049 * 149.99942 * 3 2 1 7 7 C 1.37881 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99785 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99929 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.47125 * 299.99969 * 9 7 2 11 11 N 1.46901 * 109.46746 * 59.99999 * 9 7 2 12 12 C 1.50699 * 109.47270 * 180.02562 * 9 7 2 13 13 C 1.34286 * 126.16037 * 125.02459 * 12 9 7 14 14 O 1.34810 * 107.13734 * 180.02562 * 13 12 9 15 15 C 1.33995 * 107.75418 * 359.97438 * 14 13 12 16 16 Br 1.89096 * 125.63248 * 180.02562 * 15 14 13 17 17 N 1.30364 * 108.73773 * 0.02562 * 15 14 13 18 18 H 0.97002 * 120.00263 * 0.02562 * 1 2 3 19 19 H 1.00893 * 111.00127 * 296.04422 * 11 9 7 20 20 H 1.00894 * 110.99987 * 60.00631 * 11 9 7 21 21 H 1.08003 * 126.43016 * 0.02562 * 13 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8903 11 7 0.4069 -2.5772 -1.1992 12 6 2.2302 -3.6446 0.0018 13 6 2.2714 -4.6508 0.8901 14 8 3.2919 -5.4556 0.5318 15 6 3.8577 -4.9340 -0.5652 16 35 5.3363 -5.6604 -1.4935 17 7 3.2206 -3.8431 -0.8867 18 1 -0.4850 0.8400 -0.0004 19 1 -0.3004 -1.8577 -1.1912 20 1 0.9652 -2.5260 -2.0381 21 1 1.6110 -4.7894 1.7334 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260881434.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:57 Heat of formation + Delta-G solvation = 26.891051 kcal Electronic energy + Delta-G solvation = -10733.142423 eV Core-core repulsion = 8464.268819 eV Total energy + Delta-G solvation = -2268.873604 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 245.974 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.76350 -35.46542 -33.58116 -32.06203 -30.96691 -28.69890 -25.98537 -23.10331 -21.75491 -20.18758 -16.96896 -16.55691 -16.09304 -15.01466 -14.46926 -13.87336 -13.65390 -12.87094 -12.07126 -11.46282 -11.27293 -10.98014 -10.91583 -10.72461 -10.44282 -10.09512 -9.93456 -9.83388 -8.67030 -8.26834 -7.24024 -6.11380 -4.25047 0.77161 1.80523 3.23461 3.28538 3.31724 3.38007 3.62119 4.34045 5.13197 5.49567 5.59286 5.89269 6.28349 6.58825 6.89636 7.33996 7.76376 7.99230 8.24283 8.63224 8.90633 9.10636 9.45708 10.87894 Molecular weight = 245.97amu Principal moments of inertia in cm(-1) A = 0.042029 B = 0.007101 C = 0.006486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.050557 B = 3942.151604 C = 4316.120638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.065 3.935 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.058 0.942 9 C 0.280 3.720 10 H 0.056 0.944 11 N -0.849 5.849 12 C 0.052 3.948 13 C -0.081 4.081 14 O -0.198 6.198 15 C 0.143 3.857 16 Br 0.097 6.903 17 N -0.413 5.413 18 H 0.266 0.734 19 H 0.358 0.642 20 H 0.320 0.680 21 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.105 -10.800 -1.061 13.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.137 4.137 3 Si 0.728 3.272 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.577 4.577 8 H 0.077 0.923 9 C 0.169 3.831 10 H 0.074 0.926 11 N -0.379 5.379 12 C -0.070 4.070 13 C -0.152 4.152 14 O -0.085 6.085 15 C -0.140 4.140 16 Br 0.177 6.823 17 N -0.146 5.146 18 H 0.076 0.924 19 H 0.175 0.825 20 H 0.129 0.871 21 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 8.428 -11.344 -1.590 14.221 hybrid contribution 0.403 1.645 0.652 1.815 sum 8.830 -9.699 -0.938 13.150 Atomic orbital electron populations 1.69727 1.05823 1.27321 1.50789 1.24993 0.94966 0.99383 0.94387 0.86454 0.79783 0.82700 0.78247 1.20532 1.21114 1.19900 1.21763 0.93874 0.90743 1.51344 0.92345 1.17451 0.87211 0.86103 0.92317 0.92625 1.59393 1.18389 1.55997 1.04114 1.22692 0.95754 0.97939 0.90617 1.24986 0.93111 0.92661 1.04475 1.84428 1.38417 1.47602 1.38062 1.27336 1.00701 0.95053 0.90933 1.96801 1.31441 1.83224 1.70790 1.70566 1.05689 1.11848 1.26518 0.92410 0.82543 0.87079 0.76532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.53 11.54 55.43 0.64 -23.89 14 2 C 0.06 1.75 5.38 -17.82 -0.10 1.65 14 3 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 14 4 H -0.28 -6.59 7.11 56.52 0.40 -6.18 14 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 14 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 14 7 C -0.54 -14.69 8.70 -34.44 -0.30 -14.99 14 8 H 0.06 1.66 7.74 -52.49 -0.41 1.25 14 9 C 0.28 7.00 3.19 -70.02 -0.22 6.78 14 10 H 0.06 1.44 8.11 -51.93 -0.42 1.02 14 11 N -0.85 -20.72 9.18 -6.65 -0.06 -20.78 14 12 C 0.05 1.18 5.86 -82.81 -0.48 0.69 14 13 C -0.08 -1.52 12.06 29.34 0.35 -1.17 14 14 O -0.20 -3.65 10.78 5.13 0.06 -3.60 14 15 C 0.14 2.71 8.89 52.14 0.46 3.18 14 16 Br 0.10 1.37 34.13 -68.01 -2.32 -0.95 14 17 N -0.41 -9.18 11.28 -9.57 -0.11 -9.29 14 18 H 0.27 6.95 8.31 -40.82 -0.34 6.61 14 19 H 0.36 9.15 7.08 -39.30 -0.28 8.87 14 20 H 0.32 7.85 8.98 -39.30 -0.35 7.49 14 21 H 0.22 3.18 8.06 -52.48 -0.42 2.76 14 LS Contribution 220.13 15.07 3.32 3.32 Total: -1.00 -28.52 220.13 -4.80 -33.32 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -1.02 Total: 9.50 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -0.29 Total: -3.85 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: 0.47 Total: -53.95 kcal Atomic # 8 Polarization: -3.65 SS G_CDS: 0.06 Total: -3.60 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 35 Polarization: 1.37 SS G_CDS: -2.32 Total: -0.95 kcal Total LS contribution 3.32 Total: 3.32 kcal Total: -28.52 -4.80 -33.32 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260881434.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.209 kcal (2) G-P(sol) polarization free energy of solvation -28.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds