Wall clock time and date at job start Mon Mar 30 2020 03:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30689 * 1 3 3 Si 1.86801 * 120.00103 * 2 1 4 4 H 1.48503 * 109.46829 * 269.99507 * 3 2 1 5 5 H 1.48496 * 109.47361 * 29.99666 * 3 2 1 6 6 H 1.48507 * 109.46928 * 150.00181 * 3 2 1 7 7 C 1.40135 * 119.99717 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99941 * 0.02562 * 7 2 1 9 9 C 1.41400 * 119.99920 * 179.97438 * 7 2 1 10 10 N 1.32721 * 128.85379 * 0.18310 * 9 7 2 11 11 O 1.20901 * 109.01094 * 180.27379 * 10 9 7 12 12 N 1.20771 * 116.30745 * 359.70136 * 11 10 9 13 13 C 1.30935 * 109.83597 * 0.02562 * 12 11 10 14 14 O 1.35564 * 128.72414 * 180.02562 * 13 12 11 15 15 C 1.42898 * 117.00129 * 0.02562 * 14 13 12 16 16 C 1.50703 * 109.47171 * 180.02562 * 15 14 13 17 17 C 1.38234 * 119.99770 * 269.72826 * 16 15 14 18 18 C 1.38239 * 119.99901 * 179.76875 * 17 16 15 19 19 C 1.38240 * 119.99645 * 0.50240 * 18 17 16 20 20 C 1.38227 * 120.00205 * 359.74956 * 19 18 17 21 21 C 1.38232 * 119.99860 * 90.00268 * 16 15 14 22 22 H 0.97003 * 119.99418 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47259 * 300.00526 * 15 14 13 24 24 H 1.09001 * 109.47074 * 60.00548 * 15 14 13 25 25 H 1.08001 * 120.00330 * 359.97438 * 17 16 15 26 26 H 1.08001 * 119.99843 * 180.23314 * 18 17 16 27 27 H 1.08002 * 119.99612 * 179.72381 * 19 18 17 28 28 H 1.07996 * 120.00251 * 179.97438 * 20 19 18 29 29 H 1.07998 * 120.00407 * 0.02562 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.4885 2.0463 -1.4001 5 1 1.4384 2.6527 0.6999 6 1 3.5385 1.4401 0.7000 7 6 2.0075 -1.2136 0.0005 8 1 1.4675 -2.1489 0.0005 9 6 3.4215 -1.2137 0.0000 10 7 4.2542 -0.1802 0.0023 11 8 5.3914 -0.5906 -0.0047 12 7 5.5273 -1.7906 -0.0062 13 6 4.3535 -2.3707 -0.0002 14 8 4.0618 -3.6946 0.0010 15 6 5.1656 -4.6021 -0.0045 16 6 4.6513 -6.0187 -0.0029 17 6 4.4262 -6.6709 1.1949 18 6 3.9499 -7.9686 1.1965 19 6 3.7086 -8.6177 0.0000 20 6 3.9387 -7.9673 -1.1978 21 6 4.4101 -6.6677 -1.1993 22 1 -0.4849 0.8401 0.0004 23 1 5.7684 -4.4358 -0.8973 24 1 5.7768 -4.4362 0.8827 25 1 4.6193 -6.1655 2.1296 26 1 3.7705 -8.4769 2.1324 27 1 3.3408 -9.6331 0.0012 28 1 3.7506 -8.4745 -2.1325 29 1 4.5906 -6.1599 -2.1352 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260884369.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:37 Heat of formation + Delta-G solvation = 75.667249 kcal Electronic energy + Delta-G solvation = -16683.621108 eV Core-core repulsion = 13769.556229 eV Total energy + Delta-G solvation = -2914.064879 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -46.57942 -40.59157 -39.30025 -36.30387 -34.43435 -34.09608 -32.79426 -31.87109 -29.07155 -27.63898 -24.18059 -23.55836 -23.53650 -22.17182 -19.85340 -19.42885 -19.16276 -17.87659 -17.56876 -16.91515 -16.48813 -16.31086 -15.42939 -15.38220 -14.95430 -14.33505 -14.31148 -13.85231 -13.47151 -13.36982 -13.09134 -12.90927 -12.73470 -12.22363 -12.05225 -11.94999 -11.75188 -11.17051 -10.45194 -10.19662 -9.88914 -9.87660 -9.01235 -6.90076 0.16838 0.43481 0.70709 1.08399 1.36327 1.62051 1.68673 1.80603 2.35197 2.86466 2.91727 3.27814 3.56311 3.71409 3.74666 4.00531 4.10464 4.17655 4.23601 4.29445 4.57005 4.66584 4.67552 4.96534 5.05827 5.08727 5.47459 5.53631 5.56989 5.90718 5.97917 6.02597 6.21821 6.47738 8.02030 8.50021 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.033110 B = 0.005577 C = 0.005035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.464849 B = 5019.180914 C = 5560.163782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.062 3.938 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.190 1.190 7 C -0.424 4.424 8 H 0.081 0.919 9 C 0.137 3.863 10 N -0.482 5.482 11 O 0.247 5.753 12 N -0.409 5.409 13 C 0.125 3.875 14 O -0.280 6.280 15 C 0.105 3.895 16 C -0.116 4.116 17 C -0.110 4.110 18 C -0.127 4.127 19 C -0.110 4.110 20 C -0.127 4.127 21 C -0.110 4.110 22 H 0.303 0.697 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.127 0.873 26 H 0.151 0.849 27 H 0.156 0.844 28 H 0.150 0.850 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.416 -13.303 0.255 14.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.159 4.159 3 Si 0.763 3.237 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.113 1.113 7 C -0.463 4.463 8 H 0.099 0.901 9 C -0.010 4.010 10 N -0.244 5.244 11 O 0.063 5.937 12 N -0.155 5.155 13 C -0.081 4.081 14 O -0.187 6.187 15 C 0.030 3.970 16 C -0.116 4.116 17 C -0.128 4.128 18 C -0.145 4.145 19 C -0.127 4.127 20 C -0.145 4.145 21 C -0.128 4.128 22 H 0.114 0.886 23 H 0.090 0.910 24 H 0.091 0.909 25 H 0.145 0.855 26 H 0.168 0.832 27 H 0.173 0.827 28 H 0.168 0.832 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 7.091 -12.730 0.257 14.574 hybrid contribution -0.699 0.069 -0.125 0.713 sum 6.392 -12.661 0.132 14.183 Atomic orbital electron populations 1.69502 1.08822 1.32359 1.34289 1.26662 0.95678 1.04079 0.89474 0.85850 0.81727 0.74989 0.81104 1.19569 1.20186 1.11289 1.18552 0.86186 0.96017 1.45512 0.90122 1.22494 0.96032 0.84323 0.98101 1.76209 0.90290 1.19330 1.38618 1.84546 1.24569 1.13866 1.70715 1.74580 1.22197 0.95047 1.23721 1.24322 0.89121 0.87279 1.07345 1.86192 1.34084 1.08681 1.89747 1.21690 0.87097 0.85360 1.02847 1.19571 1.03787 0.93047 0.95226 1.21312 0.98285 0.95983 0.97230 1.21501 0.98877 0.94142 0.99932 1.21650 0.97916 1.01226 0.91945 1.21496 0.98941 0.94102 0.99922 1.21311 0.98266 0.95989 0.97270 0.88627 0.90973 0.90930 0.85543 0.83175 0.82671 0.83198 0.85586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.87 13.92 21.86 0.30 -43.56 15 2 C 0.06 3.29 5.52 85.32 0.47 3.76 15 3 Si 0.94 42.93 26.73 68.60 1.83 44.76 15 4 H -0.27 -12.36 7.11 99.48 0.71 -11.66 15 5 H -0.28 -11.62 7.11 99.48 0.71 -10.91 15 6 H -0.19 -8.86 5.20 99.48 0.52 -8.34 15 7 C -0.42 -23.95 10.09 23.51 0.24 -23.71 15 8 H 0.08 4.82 8.06 -2.91 -0.02 4.80 15 9 C 0.14 7.35 6.88 42.55 0.29 7.65 15 10 N -0.48 -24.76 7.18 -52.96 -0.38 -25.14 15 11 O 0.25 11.91 11.62 140.94 1.64 13.55 15 12 N -0.41 -19.01 11.78 -173.05 -2.04 -21.05 15 13 C 0.12 6.10 8.46 87.59 0.74 6.84 15 14 O -0.28 -12.47 10.18 -88.71 -0.90 -13.38 15 15 C 0.10 3.58 5.87 71.24 0.42 3.99 15 16 C -0.12 -3.44 5.51 -19.87 -0.11 -3.55 15 17 C -0.11 -2.86 9.70 22.27 0.22 -2.65 15 18 C -0.13 -2.60 10.05 22.27 0.22 -2.37 15 19 C -0.11 -2.01 10.05 22.27 0.22 -1.79 15 20 C -0.13 -2.60 10.05 22.27 0.22 -2.38 15 21 C -0.11 -2.88 9.70 22.27 0.22 -2.66 15 22 H 0.30 14.43 8.29 -92.71 -0.77 13.66 15 23 H 0.07 2.35 8.08 -2.39 -0.02 2.33 15 24 H 0.07 2.36 8.08 -2.39 -0.02 2.34 15 25 H 0.13 3.09 8.06 -2.91 -0.02 3.07 15 26 H 0.15 2.20 8.06 -2.91 -0.02 2.17 15 27 H 0.16 1.79 8.06 -2.91 -0.02 1.77 15 28 H 0.15 2.20 8.06 -2.91 -0.02 2.18 15 29 H 0.13 3.10 8.06 -2.91 -0.02 3.08 15 Total: -1.00 -61.80 265.53 4.59 -57.21 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: 0.98 Total: 4.48 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: 3.15 Total: -16.87 kcal Atomic # 7 Polarization: -87.64 SS G_CDS: -2.12 Total: -89.76 kcal Atomic # 8 Polarization: -0.56 SS G_CDS: 0.74 Total: 0.17 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 1.83 Total: 44.76 kcal Total: -61.80 4.59 -57.21 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260884369.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.877 kcal (2) G-P(sol) polarization free energy of solvation -61.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds