Wall clock time and date at job start Mon Mar 30 2020 03:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 119.99864 * 2 1 4 4 H 1.48500 * 109.47342 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47297 * 299.99604 * 3 2 1 6 6 H 1.48498 * 109.47382 * 59.99493 * 3 2 1 7 7 C 1.37879 * 119.99777 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99327 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99943 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46661 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47037 * 180.02562 * 10 9 7 12 12 N 1.30238 * 126.27144 * 89.98124 * 11 10 9 13 13 N 1.28662 * 109.40607 * 180.02562 * 12 11 10 14 14 C 1.30384 * 109.37265 * 359.97438 * 13 12 11 15 15 Br 1.89096 * 126.29548 * 179.73872 * 14 13 12 16 16 O 1.34389 * 107.40852 * 0.02562 * 14 13 12 17 17 H 0.96996 * 119.99960 * 0.02562 * 1 2 3 18 18 H 1.08996 * 109.46945 * 60.00473 * 9 7 2 19 19 H 1.08997 * 109.47585 * 299.99994 * 9 7 2 20 20 H 1.09001 * 109.47278 * 60.00518 * 10 9 7 21 21 H 1.08998 * 109.48013 * 300.00106 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4917 -4.9672 -0.0001 12 7 1.1066 -5.6340 -1.0504 13 7 0.4904 -6.7002 -0.6777 14 6 0.4620 -6.7503 0.6249 15 35 -0.3303 -8.1080 1.6758 16 8 1.0938 -5.6563 1.0832 17 1 -0.4850 0.8400 -0.0004 18 1 0.6248 -2.5570 -0.8897 19 1 0.6240 -2.5567 0.8902 20 1 2.8719 -3.6043 0.8906 21 1 2.8720 -3.6044 -0.8894 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260885521.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:35 Heat of formation + Delta-G solvation = 10.409841 kcal Electronic energy + Delta-G solvation = -10395.083867 eV Core-core repulsion = 8125.495584 eV Total energy + Delta-G solvation = -2269.588283 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 245.974 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -45.49900 -37.53354 -36.34986 -34.40297 -33.31861 -30.87123 -27.67228 -24.74088 -24.60135 -22.68276 -19.01044 -18.64857 -18.35877 -16.75039 -16.51103 -15.79491 -15.01499 -14.37485 -13.80451 -13.57157 -13.26284 -12.96681 -12.90045 -12.66098 -12.45475 -12.15133 -11.93646 -11.83519 -11.35505 -10.60841 -10.59388 -8.22933 -6.35493 -1.01196 -0.25581 1.00306 1.45172 1.45893 1.52089 1.59688 2.42343 3.07808 3.12750 3.59007 3.81938 4.14061 4.43253 4.47153 4.83380 5.37973 5.46043 5.74223 6.08740 6.80165 6.87865 7.35151 8.89757 Molecular weight = 245.97amu Principal moments of inertia in cm(-1) A = 0.073026 B = 0.004908 C = 0.004788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.332956 B = 5703.904789 C = 5846.530217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.973 3.027 4 H -0.254 1.254 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.539 4.539 8 H 0.080 0.920 9 C 0.032 3.968 10 C -0.014 4.014 11 C 0.214 3.786 12 N -0.318 5.318 13 N -0.261 5.261 14 C 0.122 3.878 15 Br 0.178 6.822 16 O -0.211 6.211 17 H 0.264 0.736 18 H -0.004 1.004 19 H -0.003 1.003 20 H 0.116 0.884 21 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.574 -15.707 5.734 16.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.797 3.203 4 H -0.177 1.177 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.576 4.576 8 H 0.098 0.902 9 C -0.006 4.006 10 C -0.052 4.052 11 C 0.003 3.997 12 N -0.165 5.165 13 N -0.110 5.110 14 C -0.166 4.166 15 Br 0.257 6.743 16 O -0.090 6.090 17 H 0.073 0.927 18 H 0.014 0.986 19 H 0.015 0.985 20 H 0.135 0.865 21 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.979 -16.408 4.866 17.142 hybrid contribution 0.114 1.355 0.921 1.643 sum 1.093 -15.053 5.787 16.164 Atomic orbital electron populations 1.70122 1.08123 1.27995 1.51253 1.26040 0.95720 1.03754 0.94463 0.85274 0.79360 0.78183 0.77467 1.17700 1.20836 1.20687 1.21572 0.94225 0.90786 1.51057 0.90180 1.18987 0.94003 0.91932 0.95727 1.20674 0.96755 0.81009 1.06790 1.29109 0.95260 0.96800 0.78491 1.74456 1.14137 1.01877 1.25985 1.74480 1.14308 1.13712 1.08535 1.30128 1.01937 0.91756 0.92768 1.96996 1.76679 1.35769 1.64906 1.84934 1.56121 1.29473 1.38513 0.92694 0.98600 0.98479 0.86539 0.85885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.54 13.29 21.45 0.28 -55.26 14 2 C 0.00 -0.09 5.46 84.65 0.46 0.37 14 3 Si 0.97 42.13 29.54 68.60 2.03 44.15 14 4 H -0.25 -10.17 7.11 99.48 0.71 -9.47 14 5 H -0.28 -12.14 7.11 99.48 0.71 -11.44 14 6 H -0.28 -11.99 7.11 99.48 0.71 -11.28 14 7 C -0.54 -28.34 9.11 25.60 0.23 -28.11 14 8 H 0.08 3.85 7.74 -2.91 -0.02 3.83 14 9 C 0.03 1.58 4.95 29.85 0.15 1.73 14 10 C -0.01 -0.52 5.78 29.85 0.17 -0.35 14 11 C 0.21 8.19 7.73 88.35 0.68 8.87 14 12 N -0.32 -12.87 12.22 -165.47 -2.02 -14.89 14 13 N -0.26 -9.74 12.23 -171.15 -2.09 -11.84 14 14 C 0.12 3.97 9.03 130.46 1.18 5.14 14 15 Br 0.18 3.82 34.13 -20.37 -0.70 3.12 14 16 O -0.21 -7.50 10.88 -4.43 -0.05 -7.55 14 17 H 0.26 14.76 8.31 -92.71 -0.77 13.99 14 18 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 14 19 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 14 20 H 0.12 3.77 8.14 -2.39 -0.02 3.75 14 21 H 0.12 4.22 8.14 -2.39 -0.02 4.20 14 Total: -1.00 -63.06 224.29 1.58 -61.48 By element: Atomic # 1 Polarization: -8.12 SS G_CDS: 1.25 Total: -6.87 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: 2.88 Total: -12.34 kcal Atomic # 7 Polarization: -78.16 SS G_CDS: -3.83 Total: -81.99 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: -0.05 Total: -7.55 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Atomic # 35 Polarization: 3.82 SS G_CDS: -0.70 Total: 3.12 kcal Total: -63.06 1.58 -61.48 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260885521.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.891 kcal (2) G-P(sol) polarization free energy of solvation -63.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds