Wall clock time and date at job start Mon Mar 30 2020 03:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40076 * 126.09660 * 2 1 4 4 C 1.30883 * 108.42835 * 180.26740 * 3 2 1 5 5 C 1.39710 * 108.45860 * 359.74644 * 4 3 2 6 6 Br 1.89098 * 126.07096 * 179.97438 * 5 4 3 7 7 C 1.35893 * 126.10321 * 179.82071 * 2 1 3 8 8 O 1.35538 * 126.27021 * 359.97438 * 7 2 1 9 9 C 1.34804 * 116.99818 * 89.71844 * 8 7 2 10 10 H 1.07998 * 119.99658 * 359.97438 * 9 8 7 11 11 C 1.38614 * 120.00147 * 179.97438 * 9 8 7 12 12 N 1.31588 * 119.99797 * 359.72347 * 11 9 8 13 13 Si 1.86800 * 120.00275 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46758 * 269.72334 * 13 11 9 15 15 H 1.48499 * 109.47026 * 29.72182 * 13 11 9 16 16 H 1.48496 * 109.47474 * 149.72218 * 13 11 9 17 17 H 1.09000 * 109.47274 * 270.17892 * 1 2 3 18 18 H 1.08996 * 109.47555 * 30.18239 * 1 2 3 19 19 H 1.09007 * 109.46953 * 150.18224 * 1 2 3 20 20 H 1.07999 * 125.77123 * 179.73938 * 4 3 2 21 21 H 0.97000 * 119.99811 * 0.27482 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2903 1.1318 0.0000 4 6 3.5373 0.7346 -0.0058 5 6 3.5566 -0.6623 -0.0038 6 35 5.1003 -1.7545 -0.0108 7 6 2.2657 -1.0980 0.0034 8 8 1.8553 -2.3897 0.0080 9 6 1.6639 -2.9752 -1.1911 10 1 1.8371 -2.4161 -2.0988 11 6 1.2449 -4.2947 -1.2591 12 7 1.0392 -4.9775 -0.1532 13 14 0.9804 -5.1063 -2.9207 14 1 -0.4260 -4.9036 -3.3522 15 1 1.8970 -4.4998 -3.9193 16 1 1.2599 -6.5607 -2.8114 17 1 -0.3634 0.0032 1.0276 18 1 -0.3634 0.8883 -0.5166 19 1 -0.3633 -0.8917 -0.5110 20 1 4.4048 1.3779 -0.0113 21 1 1.1769 -4.5562 0.7096 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260900350.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:49 Heat of formation + Delta-G solvation = 49.622763 kcal Electronic energy + Delta-G solvation = -10904.134986 eV Core-core repulsion = 8636.247103 eV Total energy + Delta-G solvation = -2267.887883 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 245.974 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.63896 -37.06067 -32.85346 -32.12046 -30.44365 -27.96118 -25.99966 -24.50920 -20.72301 -20.37286 -18.40494 -16.79538 -15.27297 -14.84586 -13.99333 -13.86908 -13.74115 -13.30863 -12.42192 -12.19075 -11.53315 -10.95803 -10.74391 -10.36320 -10.30935 -10.27164 -9.90753 -9.35296 -8.68694 -8.41065 -7.70137 -6.62384 -4.04672 2.20495 2.34972 2.99986 3.17223 3.28376 3.34694 3.48701 4.23736 4.90438 5.14806 5.20861 5.57592 5.58693 5.84320 5.97316 6.26354 6.81858 7.20724 7.49693 8.04916 8.51626 9.02491 9.63919 10.83470 Molecular weight = 245.97amu Principal moments of inertia in cm(-1) A = 0.024221 B = 0.012410 C = 0.009036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.732752 B = 2255.712941 C = 3097.856378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.381 5.381 3 N -0.302 5.302 4 C 0.081 3.919 5 C -0.275 4.275 6 Br -0.027 7.027 7 C 0.342 3.658 8 O -0.224 6.224 9 C -0.463 4.463 10 H 0.065 0.935 11 C 0.013 3.987 12 N -0.895 5.895 13 Si 1.096 2.904 14 H -0.284 1.284 15 H -0.284 1.284 16 H -0.276 1.276 17 H 0.068 0.932 18 H 0.082 0.918 19 H 0.095 0.905 20 H 0.184 0.816 21 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.092 7.542 -0.757 8.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.175 5.175 3 N -0.126 5.126 4 C -0.106 4.106 5 C -0.366 4.366 6 Br 0.056 6.944 7 C 0.170 3.830 8 O -0.129 6.129 9 C -0.540 4.540 10 H 0.083 0.917 11 C -0.190 4.190 12 N -0.530 5.530 13 Si 0.921 3.079 14 H -0.211 1.211 15 H -0.210 1.210 16 H -0.201 1.201 17 H 0.087 0.913 18 H 0.101 0.899 19 H 0.114 0.886 20 H 0.201 0.799 21 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.221 6.484 -1.319 7.359 hybrid contribution 0.631 1.184 0.709 1.518 sum 3.852 7.668 -0.610 8.603 Atomic orbital electron populations 1.21810 0.74492 1.04405 1.02935 1.49455 1.06758 1.03880 1.57375 1.77284 1.00903 1.07550 1.26887 1.23378 0.95510 0.92605 0.99129 1.21255 0.91804 0.94256 1.29307 1.96443 1.31370 1.68061 1.98562 1.19375 0.87917 0.83190 0.92521 1.83672 1.84770 1.13335 1.31107 1.21812 1.52989 0.98363 0.80837 0.91669 1.26268 0.95250 0.91331 1.06173 1.70550 1.44567 1.39014 0.98863 0.83088 0.76666 0.76455 0.71673 1.21073 1.21031 1.20126 0.91304 0.89932 0.88637 0.79927 0.91101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.77 11.44 59.85 0.68 2.45 14 2 N -0.38 -7.98 4.04 -68.06 -0.28 -8.26 14 3 N -0.30 -5.94 12.56 30.60 0.38 -5.55 14 4 C 0.08 1.50 11.98 -17.41 -0.21 1.29 14 5 C -0.27 -5.90 6.55 -39.75 -0.26 -6.16 14 6 Br -0.03 -0.54 34.08 -68.01 -2.32 -2.85 14 7 C 0.34 8.14 6.87 -16.47 -0.11 8.03 14 8 O -0.22 -6.11 9.16 0.77 0.01 -6.10 14 9 C -0.46 -12.85 9.82 30.87 0.30 -12.55 14 10 H 0.07 1.81 7.75 -52.49 -0.41 1.40 14 11 C 0.01 0.36 5.49 -17.52 -0.10 0.27 14 12 N -0.89 -26.62 13.70 55.48 0.76 -25.86 14 13 Si 1.10 24.16 29.92 -169.99 -5.09 19.07 14 14 H -0.28 -5.92 7.11 56.52 0.40 -5.52 14 15 H -0.28 -5.97 7.11 56.52 0.40 -5.57 14 16 H -0.28 -6.04 7.11 56.52 0.40 -5.64 14 17 H 0.07 1.04 8.14 -51.93 -0.42 0.61 14 18 H 0.08 1.15 8.14 -51.93 -0.42 0.73 14 19 H 0.10 1.71 8.14 -51.93 -0.42 1.29 14 20 H 0.18 2.60 8.06 -52.49 -0.42 2.18 14 21 H 0.28 8.53 7.97 -40.82 -0.33 8.21 14 LS Contribution 225.14 15.07 3.39 3.39 Total: -1.00 -31.10 225.14 -4.04 -35.14 By element: Atomic # 1 Polarization: -1.10 SS G_CDS: -1.22 Total: -2.31 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: 0.31 Total: -6.67 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 0.87 Total: -39.67 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: 0.01 Total: -6.10 kcal Atomic # 14 Polarization: 24.16 SS G_CDS: -5.09 Total: 19.07 kcal Atomic # 35 Polarization: -0.54 SS G_CDS: -2.32 Total: -2.85 kcal Total LS contribution 3.39 Total: 3.39 kcal Total: -31.10 -4.04 -35.14 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260900350.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.763 kcal (2) G-P(sol) polarization free energy of solvation -31.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds