Wall clock time and date at job start Mon Mar 30 2020 03:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48503 * 109.47163 * 240.27725 * 3 2 1 5 5 H 1.48495 * 109.47159 * 0.27736 * 3 2 1 6 6 H 1.48505 * 109.47290 * 120.27720 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.50697 * 109.47266 * 180.02562 * 9 7 2 11 11 N 1.30040 * 126.18961 * 90.02207 * 10 9 7 12 12 O 1.21288 * 110.47868 * 180.02562 * 11 10 9 13 13 C 1.34186 * 109.69660 * 0.02562 * 12 11 10 14 14 C 1.47830 * 126.67079 * 180.02562 * 13 12 11 15 15 C 1.39619 * 120.11579 * 179.70021 * 14 13 12 16 16 C 1.37969 * 119.96134 * 179.78885 * 15 14 13 17 17 C 1.38288 * 120.20509 * 0.48624 * 16 15 14 18 18 C 1.38807 * 120.23946 * 359.73965 * 17 16 15 19 19 O 1.35909 * 119.98200 * 180.02562 * 18 17 16 20 20 C 1.38496 * 120.03345 * 0.02899 * 18 17 16 21 21 N 1.32115 * 106.65214 * 359.73286 * 13 12 11 22 22 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 23 23 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 24 24 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 25 25 H 1.07993 * 120.01673 * 0.02562 * 15 14 13 26 26 H 1.07997 * 119.89340 * 180.20704 * 16 15 14 27 27 H 1.07996 * 119.87500 * 179.72674 * 17 16 15 28 28 H 0.96709 * 113.99890 * 270.02333 * 19 18 17 29 29 H 1.08004 * 120.10126 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.0979 1.6993 -1.2159 5 1 1.2843 2.7464 0.0068 6 1 3.1081 1.6934 1.2091 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 2.2302 -3.6447 -0.0121 11 7 2.7329 -4.2309 1.0342 12 8 3.4908 -5.1172 0.7010 13 6 3.5474 -5.1842 -0.6380 14 6 4.3533 -6.1278 -1.4415 15 6 4.3037 -6.0802 -2.8360 16 6 5.0606 -6.9594 -3.5828 17 6 5.8614 -7.8955 -2.9544 18 6 5.9135 -7.9533 -1.5685 19 8 6.7028 -8.8750 -0.9564 20 6 5.1616 -7.0724 -0.8092 21 7 2.7379 -4.2471 -1.0985 22 1 -0.4849 0.8401 0.0041 23 1 0.6280 -2.5591 0.8866 24 1 0.6206 -2.5548 -0.8933 25 1 3.6763 -5.3531 -3.3298 26 1 5.0239 -6.9195 -4.6614 27 1 6.4482 -8.5840 -3.5442 28 1 6.2598 -9.7161 -0.7783 29 1 5.2010 -7.1167 0.2692 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260929605.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:06 Heat of formation + Delta-G solvation = 44.467965 kcal Electronic energy + Delta-G solvation = -16372.199876 eV Core-core repulsion = 13456.782094 eV Total energy + Delta-G solvation = -2915.417782 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.84341 -39.87904 -37.04505 -35.47164 -33.46788 -32.59552 -30.59512 -29.73620 -28.56525 -24.38318 -24.19704 -22.89262 -22.03273 -20.56496 -18.62051 -17.58207 -17.00927 -16.43179 -16.26141 -15.80038 -15.52456 -14.72655 -14.47862 -13.92556 -12.83828 -12.81710 -12.56296 -12.45525 -11.97263 -11.85943 -11.40226 -11.20670 -10.90130 -10.83295 -10.76176 -10.34912 -10.22216 -9.95807 -9.30543 -9.00752 -8.52755 -8.51685 -6.15418 -4.19512 0.51254 1.02816 2.02471 3.01088 3.10772 3.29584 3.32776 3.37226 3.50665 3.84229 4.29328 4.38556 4.70543 4.81232 5.01146 5.01768 5.21365 5.22736 5.34781 5.62975 5.69975 6.09005 6.15503 6.20318 6.43375 6.49753 6.76678 7.28470 7.35908 7.36536 7.78234 8.08908 8.80360 8.89483 9.43924 10.95414 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.040578 B = 0.004540 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.856900 B = 6166.182318 C = 6360.100857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.099 3.901 10 C 0.220 3.780 11 N -0.395 5.395 12 O 0.069 5.931 13 C 0.181 3.819 14 C 0.008 3.992 15 C -0.076 4.076 16 C -0.105 4.105 17 C -0.128 4.128 18 C 0.101 3.899 19 O -0.496 6.496 20 C -0.113 4.113 21 N -0.460 5.460 22 H 0.266 0.734 23 H 0.049 0.951 24 H 0.054 0.946 25 H 0.144 0.856 26 H 0.137 0.863 27 H 0.133 0.867 28 H 0.391 0.609 29 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.738 -17.214 -5.812 20.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.556 4.556 8 H 0.074 0.926 9 C 0.061 3.939 10 C -0.052 4.052 11 N -0.104 5.104 12 O 0.012 5.988 13 C -0.037 4.037 14 C 0.006 3.994 15 C -0.096 4.096 16 C -0.123 4.123 17 C -0.147 4.147 18 C 0.057 3.943 19 O -0.306 6.306 20 C -0.133 4.133 21 N -0.194 5.194 22 H 0.076 0.924 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.162 0.838 26 H 0.155 0.845 27 H 0.151 0.849 28 H 0.247 0.753 29 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 9.550 -16.149 -5.294 19.494 hybrid contribution 0.249 0.455 0.086 0.526 sum 9.799 -15.694 -5.208 19.221 Atomic orbital electron populations 1.69931 1.06008 1.27390 1.49558 1.24946 0.94979 0.99358 0.94667 0.86462 0.79474 0.82160 0.78845 1.19992 1.20954 1.20064 1.20796 0.92963 0.89370 1.52466 0.92584 1.17881 0.90379 0.85613 1.00036 1.26913 0.98661 0.98239 0.81407 1.74635 1.08573 1.03213 1.23972 1.85341 1.48427 1.41552 1.23439 1.26268 0.97761 0.96870 0.82802 1.17062 0.96708 0.93967 0.91683 1.21362 0.98135 0.98449 0.91635 1.20999 0.96045 0.94848 1.00439 1.21608 0.99250 1.00030 0.93845 1.18181 0.93059 0.92843 0.90232 1.84858 1.39042 1.26519 1.80204 1.21536 0.95130 0.95368 1.01274 1.72132 1.10364 1.06935 1.30007 0.92433 0.93321 0.92836 0.83778 0.84527 0.84945 0.75306 0.84155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 13.29 55.43 0.74 -25.46 15 2 C 0.06 1.80 5.46 -17.82 -0.10 1.70 15 3 Si 0.90 21.82 29.54 -169.99 -5.02 16.79 15 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 15 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 7 C -0.52 -14.96 9.09 -34.44 -0.31 -15.27 15 8 H 0.06 1.63 7.74 -52.49 -0.41 1.23 15 9 C 0.10 2.69 5.60 -29.04 -0.16 2.52 15 10 C 0.22 5.34 7.39 -156.56 -1.16 4.18 15 11 N -0.40 -9.13 12.15 31.18 0.38 -8.75 15 12 O 0.07 1.36 11.13 16.69 0.19 1.55 15 13 C 0.18 3.34 8.01 -13.85 -0.11 3.23 15 14 C 0.01 0.11 5.87 -105.00 -0.62 -0.50 15 15 C -0.08 -0.93 9.70 -39.16 -0.38 -1.31 15 16 C -0.11 -0.97 10.03 -39.66 -0.40 -1.37 15 17 C -0.13 -1.12 9.98 -39.35 -0.39 -1.51 15 18 C 0.10 1.01 6.70 -39.28 -0.26 0.75 15 19 O -0.50 -4.23 13.50 -19.46 -0.26 -4.50 15 20 C -0.11 -1.33 9.67 -39.03 -0.38 -1.70 15 21 N -0.46 -10.06 11.26 -10.17 -0.11 -10.18 15 22 H 0.27 7.35 8.31 -40.82 -0.34 7.01 15 23 H 0.05 1.36 8.14 -51.93 -0.42 0.93 15 24 H 0.05 1.48 8.14 -51.93 -0.42 1.05 15 25 H 0.14 1.83 7.88 -52.49 -0.41 1.42 15 26 H 0.14 0.89 8.06 -52.49 -0.42 0.47 15 27 H 0.13 0.85 8.06 -52.49 -0.42 0.43 15 28 H 0.39 1.37 9.06 45.56 0.41 1.78 15 29 H 0.14 1.55 7.95 -52.48 -0.42 1.13 15 LS Contribution 273.01 15.07 4.11 4.11 Total: -1.00 -32.95 273.01 -5.90 -38.85 By element: Atomic # 1 Polarization: -1.48 SS G_CDS: -1.65 Total: -3.13 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -4.27 Total: -9.28 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: 1.00 Total: -44.39 kcal Atomic # 8 Polarization: -2.87 SS G_CDS: -0.08 Total: -2.95 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -32.95 -5.90 -38.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260929605.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.315 kcal (2) G-P(sol) polarization free energy of solvation -32.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds