Wall clock time and date at job start Mon Mar 30 2020 03:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48503 * 109.47163 * 240.27725 * 3 2 1 5 5 H 1.48495 * 109.47159 * 0.27736 * 3 2 1 6 6 H 1.48505 * 109.47290 * 120.27720 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.50697 * 109.47266 * 180.02562 * 9 7 2 11 11 N 1.30040 * 126.18961 * 90.02207 * 10 9 7 12 12 O 1.21288 * 110.47868 * 180.02562 * 11 10 9 13 13 C 1.34186 * 109.69660 * 0.02562 * 12 11 10 14 14 C 1.47830 * 126.67079 * 180.02562 * 13 12 11 15 15 C 1.39619 * 120.11579 * 179.70021 * 14 13 12 16 16 C 1.37969 * 119.96134 * 179.78885 * 15 14 13 17 17 C 1.38288 * 120.20509 * 0.48624 * 16 15 14 18 18 C 1.38807 * 120.23946 * 359.73965 * 17 16 15 19 19 O 1.35909 * 119.98200 * 180.02562 * 18 17 16 20 20 C 1.38496 * 120.03345 * 0.02899 * 18 17 16 21 21 N 1.32115 * 106.65214 * 359.73286 * 13 12 11 22 22 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 23 23 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 24 24 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 25 25 H 1.07993 * 120.01673 * 0.02562 * 15 14 13 26 26 H 1.07997 * 119.89340 * 180.20704 * 16 15 14 27 27 H 1.07996 * 119.87500 * 179.72674 * 17 16 15 28 28 H 0.96709 * 113.99890 * 270.02333 * 19 18 17 29 29 H 1.08004 * 120.10126 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.0979 1.6993 -1.2159 5 1 1.2843 2.7464 0.0068 6 1 3.1081 1.6934 1.2091 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 2.2302 -3.6447 -0.0121 11 7 2.7329 -4.2309 1.0342 12 8 3.4908 -5.1172 0.7010 13 6 3.5474 -5.1842 -0.6380 14 6 4.3533 -6.1278 -1.4415 15 6 4.3037 -6.0802 -2.8360 16 6 5.0606 -6.9594 -3.5828 17 6 5.8614 -7.8955 -2.9544 18 6 5.9135 -7.9533 -1.5685 19 8 6.7028 -8.8750 -0.9564 20 6 5.1616 -7.0724 -0.8092 21 7 2.7379 -4.2471 -1.0985 22 1 -0.4849 0.8401 0.0041 23 1 0.6280 -2.5591 0.8866 24 1 0.6206 -2.5548 -0.8933 25 1 3.6763 -5.3531 -3.3298 26 1 5.0239 -6.9195 -4.6614 27 1 6.4482 -8.5840 -3.5442 28 1 6.2598 -9.7161 -0.7783 29 1 5.2010 -7.1167 0.2692 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260929605.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:06 Heat of formation + Delta-G solvation = 19.711372 kcal Electronic energy + Delta-G solvation = -16373.273403 eV Core-core repulsion = 13456.782094 eV Total energy + Delta-G solvation = -2916.491308 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -46.54778 -40.69238 -37.85247 -37.20657 -35.34841 -34.19882 -31.81701 -30.70330 -30.53421 -26.24153 -25.63018 -24.21099 -23.16166 -22.00554 -19.61073 -19.35794 -18.49492 -18.32963 -17.37660 -16.79921 -16.64368 -16.45236 -15.52947 -14.75043 -14.71007 -14.55767 -13.96040 -13.78075 -13.49984 -13.11633 -13.02693 -12.76080 -12.64084 -12.56272 -12.15776 -12.06249 -11.87126 -11.58273 -11.08936 -10.72143 -9.91729 -9.63912 -8.34417 -6.48309 -0.59943 0.22532 0.65050 1.32343 1.39639 1.39738 1.49349 1.71674 2.33935 2.58544 2.64518 2.98084 3.17568 3.34252 3.89868 3.91525 4.12173 4.22531 4.39872 4.57776 4.71393 4.89316 4.97066 5.05522 5.21651 5.26791 5.33712 5.39458 5.54169 5.71399 5.89682 6.56156 6.86769 7.19605 7.22988 8.77006 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.040578 B = 0.004540 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.856900 B = 6166.182318 C = 6360.100857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.015 3.985 3 Si 0.974 3.026 4 H -0.267 1.267 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.542 4.542 8 H 0.047 0.953 9 C 0.110 3.890 10 C 0.198 3.802 11 N -0.413 5.413 12 O 0.080 5.920 13 C 0.208 3.792 14 C -0.026 4.026 15 C -0.085 4.085 16 C -0.095 4.095 17 C -0.108 4.108 18 C 0.107 3.893 19 O -0.502 6.502 20 C -0.114 4.114 21 N -0.489 5.489 22 H 0.272 0.728 23 H 0.028 0.972 24 H 0.036 0.964 25 H 0.132 0.868 26 H 0.170 0.830 27 H 0.168 0.832 28 H 0.415 0.585 29 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.098 -18.569 -7.171 23.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.185 4.185 3 Si 0.797 3.203 4 H -0.192 1.192 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.580 4.580 8 H 0.065 0.935 9 C 0.071 3.929 10 C -0.074 4.074 11 N -0.122 5.122 12 O 0.021 5.979 13 C -0.009 4.009 14 C -0.029 4.029 15 C -0.105 4.105 16 C -0.112 4.112 17 C -0.127 4.127 18 C 0.063 3.937 19 O -0.316 6.316 20 C -0.135 4.135 21 N -0.222 5.222 22 H 0.081 0.919 23 H 0.046 0.954 24 H 0.054 0.946 25 H 0.150 0.850 26 H 0.188 0.812 27 H 0.185 0.815 28 H 0.275 0.725 29 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 11.895 -17.532 -6.658 22.208 hybrid contribution -0.356 0.617 0.435 0.834 sum 11.538 -16.915 -6.223 21.401 Atomic orbital electron populations 1.70032 1.07480 1.28749 1.49551 1.25877 0.95947 1.03050 0.93673 0.85372 0.78334 0.77473 0.79120 1.19171 1.19487 1.19498 1.21012 0.92698 0.90748 1.53577 0.93499 1.17498 0.90614 0.86666 0.98117 1.26421 0.99562 0.98692 0.82730 1.74562 1.09406 1.04066 1.24173 1.85283 1.47710 1.40621 1.24244 1.27074 0.95928 0.95705 0.82177 1.17188 0.98564 0.95024 0.92084 1.21430 0.98829 0.99226 0.90971 1.21332 0.94598 0.93419 1.01870 1.22017 0.97888 0.99333 0.93467 1.18220 0.92176 0.92602 0.90734 1.84813 1.39129 1.27556 1.80093 1.21609 0.95027 0.95170 1.01672 1.72056 1.12196 1.08549 1.29444 0.91857 0.95374 0.94593 0.85037 0.81225 0.81495 0.72530 0.84007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.23 13.29 21.45 0.28 -54.95 15 2 C 0.01 0.85 5.46 84.66 0.46 1.31 15 3 Si 0.97 44.97 29.54 68.60 2.03 47.00 15 4 H -0.27 -11.93 7.11 99.48 0.71 -11.23 15 5 H -0.27 -11.79 7.11 99.48 0.71 -11.09 15 6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 15 7 C -0.54 -32.51 9.09 25.60 0.23 -32.28 15 8 H 0.05 2.83 7.74 -2.91 -0.02 2.80 15 9 C 0.11 6.27 5.60 29.10 0.16 6.44 15 10 C 0.20 10.11 7.39 138.53 1.02 11.14 15 11 N -0.41 -19.85 12.15 -58.66 -0.71 -20.56 15 12 O 0.08 3.22 11.13 69.79 0.78 4.00 15 13 C 0.21 7.85 8.01 87.31 0.70 8.55 15 14 C -0.03 -0.72 5.87 -20.11 -0.12 -0.84 15 15 C -0.08 -1.96 9.70 22.54 0.22 -1.74 15 16 C -0.09 -1.39 10.03 22.22 0.22 -1.17 15 17 C -0.11 -1.39 9.98 22.42 0.22 -1.16 15 18 C 0.11 1.76 6.70 22.47 0.15 1.91 15 19 O -0.50 -6.61 13.50 -92.53 -1.25 -7.86 15 20 C -0.11 -2.49 9.67 22.63 0.22 -2.27 15 21 N -0.49 -22.27 11.26 -302.78 -3.41 -25.68 15 22 H 0.27 15.18 8.31 -92.71 -0.77 14.41 15 23 H 0.03 1.68 8.14 -2.38 -0.02 1.66 15 24 H 0.04 2.12 8.14 -2.39 -0.02 2.10 15 25 H 0.13 3.34 7.88 -2.91 -0.02 3.32 15 26 H 0.17 1.40 8.06 -2.91 -0.02 1.37 15 27 H 0.17 1.09 8.06 -2.91 -0.02 1.07 15 28 H 0.41 1.23 9.06 -74.05 -0.67 0.56 15 29 H 0.14 2.96 7.95 -2.91 -0.02 2.93 15 Total: -1.00 -73.46 273.01 1.74 -71.72 By element: Atomic # 1 Polarization: -4.08 SS G_CDS: 0.52 Total: -3.56 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: 3.50 Total: -10.11 kcal Atomic # 7 Polarization: -97.35 SS G_CDS: -3.84 Total: -101.19 kcal Atomic # 8 Polarization: -3.39 SS G_CDS: -0.47 Total: -3.86 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -73.46 1.74 -71.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260929605.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.434 kcal (2) G-P(sol) polarization free energy of solvation -73.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds