Wall clock time and date at job start Mon Mar 30 2020 03:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30509 * 1 3 3 Si 1.86799 * 120.00081 * 2 1 4 4 H 1.48497 * 109.47269 * 270.00132 * 3 2 1 5 5 H 1.48499 * 109.47106 * 30.00063 * 3 2 1 6 6 H 1.48500 * 109.47351 * 150.00198 * 3 2 1 7 7 C 1.40466 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99866 * 180.02562 * 7 2 1 9 9 C 1.40338 * 119.99814 * 359.97438 * 7 2 1 10 10 N 1.33329 * 126.79260 * 180.02562 * 9 7 2 11 11 C 1.33580 * 105.51320 * 180.02562 * 10 9 7 12 12 C 1.50694 * 126.06819 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47299 * 90.00149 * 12 11 10 14 14 C 1.38290 * 119.97271 * 89.99290 * 13 12 11 15 15 C 1.38251 * 120.11123 * 180.02562 * 14 13 12 16 16 C 1.38163 * 120.05527 * 0.24024 * 15 14 13 17 17 C 1.38717 * 119.94349 * 359.50941 * 16 15 14 18 18 O 1.35896 * 120.05449 * 180.21612 * 17 16 15 19 19 C 1.38121 * 119.97404 * 270.01928 * 13 12 11 20 20 N 1.30451 * 107.85305 * 0.26015 * 11 10 9 21 21 O 1.21285 * 110.68560 * 359.53681 * 20 11 10 22 22 H 0.97001 * 119.99856 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.47358 * 329.99572 * 12 11 10 24 24 H 1.09009 * 109.46799 * 209.99789 * 12 11 10 25 25 H 1.07998 * 119.94582 * 0.02562 * 14 13 12 26 26 H 1.08002 * 119.96904 * 179.97438 * 15 14 13 27 27 H 1.07998 * 120.03052 * 179.74049 * 16 15 14 28 28 H 0.96699 * 114.00130 * 270.29520 * 18 17 16 29 29 H 1.07997 * 120.02529 * 359.97438 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3051 0.0000 0.0000 3 14 2.2391 1.6177 0.0000 4 1 2.4866 2.0464 -1.4000 5 1 1.4366 2.6526 0.7000 6 1 3.5367 1.4402 0.7000 7 6 2.0074 -1.2165 -0.0005 8 1 3.0874 -1.2164 -0.0001 9 6 1.3057 -2.4318 -0.0005 10 7 1.8311 -3.6572 -0.0005 11 6 0.7889 -4.4928 -0.0011 12 6 0.8585 -5.9981 -0.0019 13 6 0.8816 -6.5007 1.4186 14 6 -0.3046 -6.7864 2.0697 15 6 -0.2868 -7.2471 3.3730 16 6 0.9164 -7.4185 4.0301 17 6 2.1078 -7.1376 3.3774 18 8 3.2928 -7.3096 4.0200 19 6 2.0873 -6.6751 2.0694 20 7 -0.2999 -3.7741 -0.0071 21 8 -0.0324 -2.5912 -0.0010 22 1 -0.4850 0.8401 0.0004 23 1 1.7644 -6.3197 -0.5158 24 1 -0.0137 -6.4019 -0.5161 25 1 -1.2463 -6.6493 1.5591 26 1 -1.2146 -7.4691 3.8795 27 1 0.9296 -7.7744 5.0496 28 1 3.5966 -6.5276 4.5009 29 1 3.0133 -6.4519 1.5605 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260967825.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:14 Heat of formation + Delta-G solvation = 21.877462 kcal Electronic energy + Delta-G solvation = -16728.285409 eV Core-core repulsion = 13811.888029 eV Total energy + Delta-G solvation = -2916.397380 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.02677 -39.53326 -36.77902 -34.19065 -34.11501 -32.06893 -30.30189 -29.54856 -27.00454 -26.36995 -22.41031 -21.96874 -21.46686 -20.41731 -18.04456 -17.43397 -16.20649 -15.81704 -15.54489 -15.45256 -14.98137 -14.84773 -13.75068 -13.50730 -13.18750 -12.99935 -12.25640 -11.93269 -11.75857 -11.57322 -11.47972 -11.40244 -11.15830 -10.52426 -10.39394 -10.08344 -9.93847 -9.50174 -8.91994 -8.63906 -8.40532 -8.25093 -7.09899 -5.03551 1.43794 1.53675 2.77702 2.94745 3.00604 3.26382 3.71993 3.73917 3.95458 4.39204 4.96586 5.05849 5.11767 5.21572 5.36409 5.45256 5.50282 5.57975 5.75706 6.02457 6.12510 6.18601 6.52831 6.58464 6.60322 6.83126 6.88558 6.98634 7.39989 7.77576 7.88544 8.09611 8.30907 8.45564 9.89369 10.37401 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.031157 B = 0.005537 C = 0.005154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.470827 B = 5055.262713 C = 5431.226221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.071 3.929 3 Si 0.936 3.064 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.256 1.256 7 C -0.417 4.417 8 H 0.112 0.888 9 C 0.302 3.698 10 N -0.612 5.612 11 C 0.163 3.837 12 C 0.020 3.980 13 C -0.051 4.051 14 C -0.116 4.116 15 C -0.108 4.108 16 C -0.153 4.153 17 C 0.098 3.902 18 O -0.502 6.502 19 C -0.125 4.125 20 N -0.468 5.468 21 O 0.046 5.954 22 H 0.292 0.708 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.125 0.875 26 H 0.124 0.876 27 H 0.123 0.877 28 H 0.389 0.611 29 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.362 -6.545 5.024 8.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C -0.154 4.154 3 Si 0.759 3.241 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.180 1.180 7 C -0.455 4.455 8 H 0.130 0.870 9 C 0.112 3.888 10 N -0.356 5.356 11 C -0.111 4.111 12 C -0.019 4.019 13 C -0.052 4.052 14 C -0.134 4.134 15 C -0.126 4.126 16 C -0.172 4.172 17 C 0.054 3.946 18 O -0.313 6.313 19 C -0.144 4.144 20 N -0.197 5.197 21 O -0.002 6.002 22 H 0.103 0.897 23 H 0.108 0.892 24 H 0.104 0.896 25 H 0.143 0.857 26 H 0.142 0.858 27 H 0.141 0.859 28 H 0.244 0.756 29 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.697 -7.580 4.773 8.984 hybrid contribution 0.383 1.495 0.265 1.566 sum 1.080 -6.085 5.038 7.973 Atomic orbital electron populations 1.69635 1.07771 1.30807 1.30909 1.26196 0.95115 1.02275 0.91844 0.85842 0.80112 0.78533 0.79662 1.18848 1.19720 1.17995 1.18565 0.94990 0.85520 1.46380 0.86994 1.24212 0.80002 0.93977 0.90646 1.72218 1.28391 0.98537 1.36429 1.24609 0.86694 0.97249 1.02507 1.18602 1.03655 0.86867 0.92791 1.19643 0.92691 0.96749 0.96091 1.21129 0.98025 0.99226 0.94984 1.20954 0.97379 0.99550 0.94721 1.21330 0.92059 1.03432 1.00330 1.18419 0.84915 0.99805 0.91489 1.84775 1.36106 1.41097 1.69272 1.21361 0.98719 0.99468 0.94823 1.74300 1.24605 0.91036 1.29796 1.85531 1.25714 1.17820 1.71090 0.89683 0.89168 0.89592 0.85659 0.85809 0.85883 0.75569 0.85103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -19.40 12.06 55.57 0.67 -18.73 15 2 C 0.07 1.70 5.50 -17.27 -0.10 1.61 15 3 Si 0.94 17.48 29.56 -169.99 -5.03 12.46 15 4 H -0.26 -4.82 7.11 56.52 0.40 -4.42 15 5 H -0.27 -4.93 7.11 56.52 0.40 -4.53 15 6 H -0.26 -4.69 7.11 56.52 0.40 -4.29 15 7 C -0.42 -10.98 9.48 -37.95 -0.36 -11.34 15 8 H 0.11 2.78 7.85 -52.49 -0.41 2.36 15 9 C 0.30 8.59 7.81 -16.35 -0.13 8.46 15 10 N -0.61 -16.61 11.61 -11.50 -0.13 -16.75 15 11 C 0.16 4.06 7.41 -156.78 -1.16 2.90 15 12 C 0.02 0.37 5.97 -29.04 -0.17 0.20 15 13 C -0.05 -0.90 5.11 -104.65 -0.54 -1.43 15 14 C -0.12 -1.88 9.70 -39.56 -0.38 -2.26 15 15 C -0.11 -1.53 10.04 -39.60 -0.40 -1.93 15 16 C -0.15 -2.17 9.99 -39.43 -0.39 -2.56 15 17 C 0.10 1.52 6.71 -39.21 -0.26 1.26 15 18 O -0.50 -6.88 13.50 -19.41 -0.26 -7.14 15 19 C -0.13 -2.15 9.64 -39.43 -0.38 -2.53 15 20 N -0.47 -12.68 12.15 31.51 0.38 -12.30 15 21 O 0.05 1.33 9.74 15.13 0.15 1.47 15 22 H 0.29 6.55 8.29 -40.82 -0.34 6.21 15 23 H 0.09 1.58 8.08 -51.93 -0.42 1.16 15 24 H 0.09 1.46 8.09 -51.92 -0.42 1.04 15 25 H 0.13 1.92 8.06 -52.49 -0.42 1.50 15 26 H 0.12 1.40 8.06 -52.49 -0.42 0.98 15 27 H 0.12 1.44 8.06 -52.49 -0.42 1.02 15 28 H 0.39 3.65 9.06 45.56 0.41 4.06 15 29 H 0.13 2.23 8.06 -52.49 -0.42 1.81 15 LS Contribution 270.92 15.07 4.08 4.08 Total: -1.00 -31.55 270.92 -6.07 -37.63 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -1.66 Total: 6.91 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -4.27 Total: -7.63 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: 0.92 Total: -47.78 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -0.11 Total: -5.67 kcal Atomic # 14 Polarization: 17.48 SS G_CDS: -5.03 Total: 12.46 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.55 -6.07 -37.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260967825.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.506 kcal (2) G-P(sol) polarization free energy of solvation -31.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds