Wall clock time and date at job start Mon Mar 30 2020 03:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30509 * 1 3 3 Si 1.86799 * 120.00081 * 2 1 4 4 H 1.48497 * 109.47269 * 270.00132 * 3 2 1 5 5 H 1.48499 * 109.47106 * 30.00063 * 3 2 1 6 6 H 1.48500 * 109.47351 * 150.00198 * 3 2 1 7 7 C 1.40466 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99866 * 180.02562 * 7 2 1 9 9 C 1.40338 * 119.99814 * 359.97438 * 7 2 1 10 10 N 1.33329 * 126.79260 * 180.02562 * 9 7 2 11 11 C 1.33580 * 105.51320 * 180.02562 * 10 9 7 12 12 C 1.50694 * 126.06819 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47299 * 90.00149 * 12 11 10 14 14 C 1.38290 * 119.97271 * 89.99290 * 13 12 11 15 15 C 1.38251 * 120.11123 * 180.02562 * 14 13 12 16 16 C 1.38163 * 120.05527 * 0.24024 * 15 14 13 17 17 C 1.38717 * 119.94349 * 359.50941 * 16 15 14 18 18 O 1.35896 * 120.05449 * 180.21612 * 17 16 15 19 19 C 1.38121 * 119.97404 * 270.01928 * 13 12 11 20 20 N 1.30451 * 107.85305 * 0.26015 * 11 10 9 21 21 O 1.21285 * 110.68560 * 359.53681 * 20 11 10 22 22 H 0.97001 * 119.99856 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.47358 * 329.99572 * 12 11 10 24 24 H 1.09009 * 109.46799 * 209.99789 * 12 11 10 25 25 H 1.07998 * 119.94582 * 0.02562 * 14 13 12 26 26 H 1.08002 * 119.96904 * 179.97438 * 15 14 13 27 27 H 1.07998 * 120.03052 * 179.74049 * 16 15 14 28 28 H 0.96699 * 114.00130 * 270.29520 * 18 17 16 29 29 H 1.07997 * 120.02529 * 359.97438 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3051 0.0000 0.0000 3 14 2.2391 1.6177 0.0000 4 1 2.4866 2.0464 -1.4000 5 1 1.4366 2.6526 0.7000 6 1 3.5367 1.4402 0.7000 7 6 2.0074 -1.2165 -0.0005 8 1 3.0874 -1.2164 -0.0001 9 6 1.3057 -2.4318 -0.0005 10 7 1.8311 -3.6572 -0.0005 11 6 0.7889 -4.4928 -0.0011 12 6 0.8585 -5.9981 -0.0019 13 6 0.8816 -6.5007 1.4186 14 6 -0.3046 -6.7864 2.0697 15 6 -0.2868 -7.2471 3.3730 16 6 0.9164 -7.4185 4.0301 17 6 2.1078 -7.1376 3.3774 18 8 3.2928 -7.3096 4.0200 19 6 2.0873 -6.6751 2.0694 20 7 -0.2999 -3.7741 -0.0071 21 8 -0.0324 -2.5912 -0.0010 22 1 -0.4850 0.8401 0.0004 23 1 1.7644 -6.3197 -0.5158 24 1 -0.0137 -6.4019 -0.5161 25 1 -1.2463 -6.6493 1.5591 26 1 -1.2146 -7.4691 3.8795 27 1 0.9296 -7.7744 5.0496 28 1 3.5966 -6.5276 4.5009 29 1 3.0133 -6.4519 1.5605 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260967825.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:14 Heat of formation + Delta-G solvation = -1.537873 kcal Electronic energy + Delta-G solvation = -16729.300774 eV Core-core repulsion = 13811.888029 eV Total energy + Delta-G solvation = -2917.412745 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -45.03492 -40.71880 -37.95920 -36.06877 -35.96118 -33.68839 -32.06378 -30.80937 -28.68344 -28.17769 -23.77319 -23.59355 -23.19098 -22.07739 -19.66221 -18.89610 -17.86977 -17.37285 -17.31080 -16.92030 -16.55319 -16.16063 -15.35320 -14.84153 -14.80001 -14.30300 -13.76465 -13.55392 -13.36822 -13.08705 -13.00812 -12.78823 -12.47116 -12.10046 -11.98286 -11.88197 -11.57736 -11.26694 -10.97356 -10.29637 -9.85831 -9.58872 -8.95799 -7.09393 0.22868 0.32478 0.99748 1.40606 1.54906 1.60754 2.02159 2.15024 2.60314 3.01689 3.27373 3.28081 3.64014 3.80299 3.83388 4.06318 4.18870 4.34831 4.52259 4.64143 4.72984 4.91176 4.93621 5.01316 5.40247 5.40702 5.49521 5.60226 5.86156 5.87991 6.08095 6.30068 6.45208 6.79624 8.06423 8.31451 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.031157 B = 0.005537 C = 0.005154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.470827 B = 5055.262713 C = 5431.226221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.029 3.971 3 Si 1.021 2.979 4 H -0.253 1.253 5 H -0.259 1.259 6 H -0.249 1.249 7 C -0.435 4.435 8 H 0.121 0.879 9 C 0.270 3.730 10 N -0.635 5.635 11 C 0.176 3.824 12 C 0.022 3.978 13 C -0.071 4.071 14 C -0.129 4.129 15 C -0.102 4.102 16 C -0.148 4.148 17 C 0.096 3.904 18 O -0.507 6.507 19 C -0.145 4.145 20 N -0.493 5.493 21 O 0.011 5.989 22 H 0.306 0.694 23 H 0.100 0.900 24 H 0.103 0.897 25 H 0.129 0.871 26 H 0.157 0.843 27 H 0.153 0.847 28 H 0.408 0.592 29 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.813 -6.078 6.264 8.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.193 4.193 3 Si 0.837 3.163 4 H -0.178 1.178 5 H -0.183 1.183 6 H -0.172 1.172 7 C -0.472 4.472 8 H 0.139 0.861 9 C 0.082 3.918 10 N -0.381 5.381 11 C -0.099 4.099 12 C -0.017 4.017 13 C -0.072 4.072 14 C -0.148 4.148 15 C -0.120 4.120 16 C -0.167 4.167 17 C 0.051 3.949 18 O -0.320 6.320 19 C -0.164 4.164 20 N -0.228 5.228 21 O -0.031 6.031 22 H 0.117 0.883 23 H 0.119 0.881 24 H 0.122 0.878 25 H 0.147 0.853 26 H 0.175 0.825 27 H 0.171 0.829 28 H 0.266 0.734 29 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.143 -7.091 6.018 9.371 hybrid contribution 0.253 1.310 -0.068 1.336 sum 1.396 -5.781 5.950 8.413 Atomic orbital electron populations 1.69692 1.09731 1.32931 1.29917 1.27380 0.95904 1.05777 0.90241 0.84623 0.78640 0.72724 0.80263 1.17757 1.18272 1.17168 1.19122 0.95700 0.86170 1.46251 0.86134 1.24830 0.80281 0.95203 0.91535 1.72217 1.29283 0.98687 1.37877 1.25489 0.85552 0.99401 0.99446 1.18792 1.05012 0.83231 0.94644 1.19583 0.93712 0.98432 0.95514 1.21313 0.97571 0.99740 0.96131 1.21336 0.98925 0.97925 0.93793 1.21685 0.91302 1.02139 1.01534 1.18530 0.86057 0.99234 0.91047 1.84723 1.35568 1.42387 1.69293 1.21414 0.98211 1.00814 0.95956 1.74237 1.25512 0.90736 1.32292 1.85471 1.26064 1.18842 1.72711 0.88280 0.88140 0.87825 0.85315 0.82503 0.82885 0.73364 0.86075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.62 12.06 21.91 0.26 -40.36 15 2 C 0.03 1.38 5.50 85.43 0.47 1.85 15 3 Si 1.02 34.48 29.56 68.60 2.03 36.51 15 4 H -0.25 -8.15 7.11 99.48 0.71 -7.44 15 5 H -0.26 -8.14 7.11 99.48 0.71 -7.43 15 6 H -0.25 -8.04 7.11 99.48 0.71 -7.33 15 7 C -0.44 -23.28 9.48 23.32 0.22 -23.06 15 8 H 0.12 6.02 7.85 -2.91 -0.02 6.00 15 9 C 0.27 15.86 7.81 85.06 0.66 16.52 15 10 N -0.64 -35.59 11.61 -305.20 -3.54 -39.14 15 11 C 0.18 8.97 7.41 138.60 1.03 9.99 15 12 C 0.02 0.84 5.97 29.10 0.17 1.02 15 13 C -0.07 -2.53 5.11 -19.88 -0.10 -2.64 15 14 C -0.13 -4.09 9.70 22.29 0.22 -3.87 15 15 C -0.10 -2.64 10.04 22.26 0.22 -2.42 15 16 C -0.15 -3.80 9.99 22.37 0.22 -3.57 15 17 C 0.10 2.83 6.71 22.51 0.15 2.98 15 18 O -0.51 -13.00 13.50 -92.38 -1.25 -14.25 15 19 C -0.15 -4.98 9.64 22.36 0.22 -4.77 15 20 N -0.49 -27.60 12.15 -56.60 -0.69 -28.29 15 21 O 0.01 0.64 9.74 64.19 0.63 1.26 15 22 H 0.31 13.58 8.29 -92.71 -0.77 12.82 15 23 H 0.10 3.57 8.08 -2.39 -0.02 3.55 15 24 H 0.10 3.54 8.09 -2.38 -0.02 3.52 15 25 H 0.13 3.88 8.06 -2.91 -0.02 3.85 15 26 H 0.16 2.97 8.06 -2.91 -0.02 2.95 15 27 H 0.15 2.98 8.06 -2.91 -0.02 2.95 15 28 H 0.41 6.92 9.06 -74.06 -0.67 6.25 15 29 H 0.12 4.25 8.06 -2.91 -0.02 4.23 15 Total: -1.00 -69.76 270.92 1.45 -68.31 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: 0.53 Total: 23.91 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: 3.49 Total: -7.96 kcal Atomic # 7 Polarization: -103.82 SS G_CDS: -3.97 Total: -107.79 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -0.62 Total: -12.99 kcal Atomic # 14 Polarization: 34.48 SS G_CDS: 2.03 Total: 36.51 kcal Total: -69.76 1.45 -68.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260967825.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.771 kcal (2) G-P(sol) polarization free energy of solvation -69.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds