Wall clock time and date at job start Mon Mar 30 2020 03:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86805 * 119.99451 * 2 1 4 4 H 1.48501 * 109.46982 * 240.00263 * 3 2 1 5 5 H 1.48501 * 109.47094 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47077 * 120.00158 * 3 2 1 7 7 C 1.39971 * 120.00598 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00018 * 180.02562 * 7 2 1 9 9 C 1.41739 * 119.99465 * 359.97438 * 7 2 1 10 10 N 1.31859 * 126.59529 * 359.97438 * 9 7 2 11 11 O 1.21274 * 109.90614 * 180.02562 * 10 9 7 12 12 C 1.33802 * 110.33138 * 0.02562 * 11 10 9 13 13 C 1.50697 * 126.28179 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47395 * 270.02551 * 13 12 11 15 15 C 1.38271 * 119.94467 * 270.30647 * 14 13 12 16 16 C 1.38138 * 120.05803 * 180.30180 * 15 14 13 17 17 C 1.38736 * 119.94337 * 359.41293 * 16 15 14 18 18 O 1.35893 * 120.05957 * 180.30421 * 17 16 15 19 19 C 1.38740 * 119.88595 * 0.28279 * 17 16 15 20 20 C 1.38146 * 119.94197 * 359.97438 * 19 17 16 21 21 N 1.30751 * 107.42690 * 0.26097 * 12 11 10 22 22 H 0.96997 * 120.00617 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46697 * 150.02361 * 13 12 11 24 24 H 1.09002 * 109.47217 * 30.02697 * 13 12 11 25 25 H 1.08004 * 119.97370 * 0.02562 * 15 14 13 26 26 H 1.08002 * 120.03311 * 179.69762 * 16 15 14 27 27 H 0.96702 * 114.00269 * 89.99703 * 18 17 16 28 28 H 1.07993 * 120.02463 * 180.02562 * 19 17 16 29 29 H 1.08006 * 119.96944 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6179 0.0000 4 1 3.0950 1.6966 -1.2126 5 1 1.2762 2.7465 0.0006 6 1 3.0951 1.6966 1.2125 7 6 2.0074 -1.2121 -0.0005 8 1 3.0874 -1.2120 -0.0001 9 6 1.2987 -2.4396 -0.0005 10 7 -0.0111 -2.5911 0.0004 11 8 -0.2903 -3.7712 0.0006 12 6 0.8236 -4.5125 0.0004 13 6 0.8930 -6.0179 0.0010 14 6 0.9163 -6.5191 1.4220 15 6 2.1235 -6.6874 2.0748 16 6 2.1479 -7.1526 3.3753 17 6 0.9591 -7.4395 4.0305 18 8 0.9801 -7.8914 5.3120 19 6 -0.2512 -7.2637 3.3755 20 6 -0.2698 -6.8033 2.0731 21 7 1.8407 -3.6909 0.0057 22 1 -0.4851 0.8400 0.0004 23 1 1.7987 -6.3400 -0.5128 24 1 0.0207 -6.4221 -0.5126 25 1 3.0485 -6.4592 1.5661 26 1 3.0913 -7.2886 3.8832 27 1 0.9475 -7.1901 5.9770 28 1 -1.1779 -7.4859 3.8835 29 1 -1.2118 -6.6667 1.5626 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260970455.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:43 Heat of formation + Delta-G solvation = 33.302642 kcal Electronic energy + Delta-G solvation = -16647.458687 eV Core-core repulsion = 13731.556741 eV Total energy + Delta-G solvation = -2915.901947 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.20891 -39.66372 -36.99696 -34.38683 -33.49373 -32.19920 -30.91266 -29.55265 -26.65766 -26.13651 -22.75755 -21.95737 -21.65397 -20.45217 -18.38386 -17.30987 -16.34773 -15.74948 -15.67765 -15.55090 -15.07131 -14.68352 -13.89304 -13.58847 -13.39875 -13.04321 -12.55881 -12.10485 -11.68775 -11.54721 -11.29238 -11.27793 -10.86462 -10.42716 -10.38459 -10.20354 -10.09535 -9.24374 -9.06706 -8.89614 -8.44424 -8.05984 -6.61746 -4.62610 1.24499 1.45183 2.88610 3.06382 3.10975 3.14409 3.63745 3.98485 4.07092 4.24579 4.46896 4.88843 4.99346 5.04294 5.22496 5.34890 5.47251 5.63679 5.80589 5.88439 5.99295 6.14971 6.35495 6.47499 6.64077 6.71750 6.83195 7.00467 7.27102 7.62544 7.77272 8.30738 8.53747 8.86206 10.33411 10.46563 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.033343 B = 0.005190 C = 0.004961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.556740 B = 5394.002865 C = 5642.914275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.070 3.930 3 Si 0.924 3.076 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.435 4.435 8 H 0.090 0.910 9 C 0.289 3.711 10 N -0.424 5.424 11 O 0.016 5.984 12 C 0.120 3.880 13 C 0.025 3.975 14 C -0.085 4.085 15 C -0.083 4.083 16 C -0.147 4.147 17 C 0.097 3.903 18 O -0.503 6.503 19 C -0.147 4.147 20 C -0.090 4.090 21 N -0.516 5.516 22 H 0.278 0.722 23 H 0.103 0.897 24 H 0.096 0.904 25 H 0.131 0.869 26 H 0.127 0.873 27 H 0.389 0.611 28 H 0.127 0.873 29 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.819 -11.443 5.131 12.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.151 4.151 3 Si 0.748 3.252 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.476 4.476 8 H 0.108 0.892 9 C 0.037 3.963 10 N -0.152 5.152 11 O -0.025 6.025 12 C -0.103 4.103 13 C -0.014 4.014 14 C -0.086 4.086 15 C -0.101 4.101 16 C -0.165 4.165 17 C 0.053 3.947 18 O -0.313 6.313 19 C -0.166 4.166 20 C -0.108 4.108 21 N -0.257 5.257 22 H 0.089 0.911 23 H 0.121 0.879 24 H 0.114 0.886 25 H 0.149 0.851 26 H 0.145 0.855 27 H 0.244 0.756 28 H 0.145 0.855 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.447 -11.225 4.862 12.241 hybrid contribution 0.338 1.226 0.341 1.317 sum 0.785 -9.999 5.203 11.299 Atomic orbital electron populations 1.69859 1.07151 1.28773 1.34498 1.25833 0.94969 1.01075 0.93217 0.86128 0.79601 0.79683 0.79803 1.18942 1.20354 1.18988 1.18367 0.94147 0.86271 1.48837 0.89157 1.22421 0.86063 0.91555 0.96229 1.75576 1.16053 0.90286 1.33277 1.85196 1.34647 1.13956 1.68670 1.27756 0.84024 0.96791 1.01722 1.18742 1.04960 0.84025 0.93671 1.19729 0.93434 0.99485 0.95981 1.21015 0.98126 0.96910 0.94033 1.21373 0.97911 1.01296 0.95955 1.18484 0.92512 0.98260 0.85413 1.84785 1.96450 1.36415 1.13696 1.21353 0.97544 1.01764 0.95898 1.21007 0.98108 0.97505 0.94160 1.72150 1.29450 1.00932 1.23190 0.91142 0.87860 0.88557 0.85060 0.85527 0.75580 0.85526 0.85151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.11 11.98 55.55 0.67 -21.44 15 2 C 0.07 1.90 5.50 -17.37 -0.10 1.81 15 3 Si 0.92 19.81 29.56 -169.99 -5.02 14.79 15 4 H -0.26 -5.54 7.11 56.52 0.40 -5.14 15 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 15 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 15 7 C -0.44 -12.57 9.52 -37.60 -0.36 -12.93 15 8 H 0.09 2.47 7.85 -52.49 -0.41 2.06 15 9 C 0.29 8.49 7.70 -157.00 -1.21 7.28 15 10 N -0.42 -12.50 10.49 30.27 0.32 -12.18 15 11 O 0.02 0.41 11.28 17.70 0.20 0.61 15 12 C 0.12 2.66 7.71 -12.92 -0.10 2.56 15 13 C 0.03 0.39 5.97 -29.04 -0.17 0.21 15 14 C -0.09 -1.27 5.12 -104.60 -0.54 -1.80 15 15 C -0.08 -1.19 9.69 -39.61 -0.38 -1.57 15 16 C -0.15 -1.96 9.99 -39.43 -0.39 -2.35 15 17 C 0.10 1.29 6.71 -39.21 -0.26 1.02 15 18 O -0.50 -5.79 13.50 -19.40 -0.26 -6.05 15 19 C -0.15 -1.92 9.99 -39.43 -0.39 -2.31 15 20 C -0.09 -1.24 9.69 -39.61 -0.38 -1.62 15 21 N -0.52 -13.40 11.62 -10.83 -0.13 -13.52 15 22 H 0.28 7.20 8.29 -40.82 -0.34 6.86 15 23 H 0.10 1.40 8.09 -51.93 -0.42 0.98 15 24 H 0.10 1.21 8.08 -51.93 -0.42 0.79 15 25 H 0.13 1.78 8.06 -52.48 -0.42 1.36 15 26 H 0.13 1.45 8.06 -52.49 -0.42 1.03 15 27 H 0.39 2.73 9.06 45.56 0.41 3.15 15 28 H 0.13 1.40 8.06 -52.49 -0.42 0.98 15 29 H 0.13 1.60 8.06 -52.48 -0.42 1.17 15 LS Contribution 270.93 15.07 4.08 4.08 Total: -1.00 -34.63 270.93 -6.10 -40.73 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -1.66 Total: 2.70 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -4.29 Total: -9.71 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: 0.86 Total: -47.15 kcal Atomic # 8 Polarization: -5.38 SS G_CDS: -0.06 Total: -5.44 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -34.63 -6.10 -40.73 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260970455.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.031 kcal (2) G-P(sol) polarization free energy of solvation -34.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds