Wall clock time and date at job start Mon Mar 30 2020 03:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86805 * 119.99451 * 2 1 4 4 H 1.48501 * 109.46982 * 240.00263 * 3 2 1 5 5 H 1.48501 * 109.47094 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47077 * 120.00158 * 3 2 1 7 7 C 1.39971 * 120.00598 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00018 * 180.02562 * 7 2 1 9 9 C 1.41739 * 119.99465 * 359.97438 * 7 2 1 10 10 N 1.31859 * 126.59529 * 359.97438 * 9 7 2 11 11 O 1.21274 * 109.90614 * 180.02562 * 10 9 7 12 12 C 1.33802 * 110.33138 * 0.02562 * 11 10 9 13 13 C 1.50697 * 126.28179 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47395 * 270.02551 * 13 12 11 15 15 C 1.38271 * 119.94467 * 270.30647 * 14 13 12 16 16 C 1.38138 * 120.05803 * 180.30180 * 15 14 13 17 17 C 1.38736 * 119.94337 * 359.41293 * 16 15 14 18 18 O 1.35893 * 120.05957 * 180.30421 * 17 16 15 19 19 C 1.38740 * 119.88595 * 0.28279 * 17 16 15 20 20 C 1.38146 * 119.94197 * 359.97438 * 19 17 16 21 21 N 1.30751 * 107.42690 * 0.26097 * 12 11 10 22 22 H 0.96997 * 120.00617 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46697 * 150.02361 * 13 12 11 24 24 H 1.09002 * 109.47217 * 30.02697 * 13 12 11 25 25 H 1.08004 * 119.97370 * 0.02562 * 15 14 13 26 26 H 1.08002 * 120.03311 * 179.69762 * 16 15 14 27 27 H 0.96702 * 114.00269 * 89.99703 * 18 17 16 28 28 H 1.07993 * 120.02463 * 180.02562 * 19 17 16 29 29 H 1.08006 * 119.96944 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6179 0.0000 4 1 3.0950 1.6966 -1.2126 5 1 1.2762 2.7465 0.0006 6 1 3.0951 1.6966 1.2125 7 6 2.0074 -1.2121 -0.0005 8 1 3.0874 -1.2120 -0.0001 9 6 1.2987 -2.4396 -0.0005 10 7 -0.0111 -2.5911 0.0004 11 8 -0.2903 -3.7712 0.0006 12 6 0.8236 -4.5125 0.0004 13 6 0.8930 -6.0179 0.0010 14 6 0.9163 -6.5191 1.4220 15 6 2.1235 -6.6874 2.0748 16 6 2.1479 -7.1526 3.3753 17 6 0.9591 -7.4395 4.0305 18 8 0.9801 -7.8914 5.3120 19 6 -0.2512 -7.2637 3.3755 20 6 -0.2698 -6.8033 2.0731 21 7 1.8407 -3.6909 0.0057 22 1 -0.4851 0.8400 0.0004 23 1 1.7987 -6.3400 -0.5128 24 1 0.0207 -6.4221 -0.5126 25 1 3.0485 -6.4592 1.5661 26 1 3.0913 -7.2886 3.8832 27 1 0.9475 -7.1901 5.9770 28 1 -1.1779 -7.4859 3.8835 29 1 -1.2118 -6.6667 1.5626 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260970455.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:43 Heat of formation + Delta-G solvation = 7.164539 kcal Electronic energy + Delta-G solvation = -16648.592120 eV Core-core repulsion = 13731.556741 eV Total energy + Delta-G solvation = -2917.035380 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.24594 -40.68277 -38.00197 -36.41700 -35.27575 -33.84142 -31.94414 -31.23450 -28.66369 -27.57192 -24.01129 -23.62719 -23.21356 -22.06510 -19.34811 -19.20528 -18.21129 -17.74994 -16.82386 -16.69795 -16.50024 -16.09896 -15.58360 -14.87546 -14.67476 -14.39730 -13.77557 -13.40248 -13.12904 -13.09739 -12.92647 -12.66884 -12.63958 -12.13127 -12.12266 -11.98663 -11.38090 -11.17792 -11.11325 -10.14640 -9.93704 -9.49457 -8.64212 -6.79015 0.16866 0.41005 1.04860 1.36600 1.37382 1.52307 2.06019 2.19380 2.48659 2.93123 3.22251 3.32867 3.59085 3.84470 3.94972 4.06788 4.42485 4.43999 4.56828 4.66592 4.75548 4.87943 5.09149 5.16373 5.24774 5.32029 5.44467 5.61649 5.78774 5.88165 6.16865 6.46852 6.75873 6.82829 8.34077 8.46561 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.033343 B = 0.005190 C = 0.004961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.556740 B = 5394.002865 C = 5642.914275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.023 3.977 3 Si 1.008 2.992 4 H -0.255 1.255 5 H -0.266 1.266 6 H -0.256 1.256 7 C -0.473 4.473 8 H 0.093 0.907 9 C 0.259 3.741 10 N -0.463 5.463 11 O 0.008 5.992 12 C 0.145 3.855 13 C 0.029 3.971 14 C -0.105 4.105 15 C -0.093 4.093 16 C -0.156 4.156 17 C 0.100 3.900 18 O -0.508 6.508 19 C -0.154 4.154 20 C -0.095 4.095 21 N -0.542 5.542 22 H 0.286 0.714 23 H 0.123 0.877 24 H 0.130 0.870 25 H 0.133 0.867 26 H 0.142 0.858 27 H 0.409 0.591 28 H 0.146 0.854 29 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.222 -11.759 5.718 13.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.195 4.195 3 Si 0.826 3.174 4 H -0.179 1.179 5 H -0.190 1.190 6 H -0.180 1.180 7 C -0.513 4.513 8 H 0.111 0.889 9 C 0.007 3.993 10 N -0.193 5.193 11 O -0.031 6.031 12 C -0.077 4.077 13 C -0.009 4.009 14 C -0.107 4.107 15 C -0.111 4.111 16 C -0.174 4.174 17 C 0.055 3.945 18 O -0.321 6.321 19 C -0.172 4.172 20 C -0.113 4.113 21 N -0.282 5.282 22 H 0.096 0.904 23 H 0.141 0.859 24 H 0.148 0.852 25 H 0.151 0.849 26 H 0.160 0.840 27 H 0.268 0.732 28 H 0.164 0.836 29 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.851 -11.575 5.462 12.827 hybrid contribution 0.185 1.133 0.245 1.174 sum 1.036 -10.442 5.707 11.945 Atomic orbital electron populations 1.69966 1.09110 1.30398 1.34771 1.26981 0.95874 1.04939 0.91666 0.84884 0.78184 0.73952 0.80332 1.17877 1.18992 1.17998 1.18826 0.94634 0.87461 1.50417 0.88894 1.22907 0.86625 0.93001 0.96751 1.75545 1.16511 0.92168 1.35115 1.85099 1.35476 1.13310 1.69222 1.28997 0.82197 0.99104 0.97372 1.19122 1.07612 0.79103 0.95105 1.19721 0.94139 1.01073 0.95731 1.21172 0.98206 0.97142 0.94628 1.21587 0.98902 1.01198 0.95730 1.18621 0.92517 0.97212 0.86131 1.84730 1.96374 1.37554 1.13473 1.21613 0.98443 1.01430 0.95747 1.21247 0.98344 0.97109 0.94597 1.72133 1.30564 1.00390 1.25128 0.90378 0.85861 0.85225 0.84876 0.83974 0.73185 0.83607 0.83811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.23 11.98 21.82 0.26 -46.97 15 2 C 0.02 1.23 5.50 85.27 0.47 1.70 15 3 Si 1.01 40.40 29.56 68.60 2.03 42.43 15 4 H -0.25 -9.73 7.11 99.48 0.71 -9.02 15 5 H -0.27 -9.99 7.11 99.48 0.71 -9.28 15 6 H -0.26 -9.80 7.11 99.48 0.71 -9.09 15 7 C -0.47 -27.95 9.52 23.56 0.22 -27.72 15 8 H 0.09 5.20 7.85 -2.91 -0.02 5.18 15 9 C 0.26 15.63 7.70 134.75 1.04 16.67 15 10 N -0.46 -28.03 10.49 -60.21 -0.63 -28.66 15 11 O 0.01 0.44 11.28 73.42 0.83 1.27 15 12 C 0.15 6.46 7.71 88.33 0.68 7.14 15 13 C 0.03 0.85 5.97 29.10 0.17 1.02 15 14 C -0.11 -2.99 5.12 -19.85 -0.10 -3.09 15 15 C -0.09 -2.58 9.69 22.25 0.22 -2.36 15 16 C -0.16 -3.92 9.99 22.37 0.22 -3.69 15 17 C 0.10 2.43 6.71 22.51 0.15 2.58 15 18 O -0.51 -10.47 13.50 -92.34 -1.25 -11.72 15 19 C -0.15 -3.71 9.99 22.37 0.22 -3.49 15 20 C -0.09 -2.46 9.69 22.25 0.22 -2.24 15 21 N -0.54 -28.55 11.62 -304.62 -3.54 -32.09 15 22 H 0.29 14.95 8.29 -92.71 -0.77 14.18 15 23 H 0.12 3.10 8.09 -2.39 -0.02 3.08 15 24 H 0.13 2.90 8.08 -2.39 -0.02 2.88 15 25 H 0.13 3.51 8.06 -2.91 -0.02 3.49 15 26 H 0.14 3.02 8.06 -2.91 -0.02 2.99 15 27 H 0.41 4.75 9.06 -74.06 -0.67 4.08 15 28 H 0.15 2.86 8.06 -2.91 -0.02 2.84 15 29 H 0.14 3.23 8.06 -2.91 -0.02 3.21 15 Total: -1.00 -76.43 270.93 1.74 -74.69 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.53 Total: 14.54 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: 3.51 Total: -13.48 kcal Atomic # 7 Polarization: -103.81 SS G_CDS: -3.91 Total: -107.72 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: -0.42 Total: -10.45 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.43 kcal Total: -76.43 1.74 -74.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260970455.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.853 kcal (2) G-P(sol) polarization free energy of solvation -76.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds