Wall clock time and date at job start Mon Mar 30 2020 03:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.39252 * 119.99734 * 2 1 4 4 N 1.31067 * 125.80322 * 0.02562 * 3 2 1 5 5 O 1.41501 * 108.77997 * 179.97438 * 4 3 2 6 6 C 1.35171 * 108.06723 * 0.02562 * 5 4 3 7 7 C 1.39921 * 126.36791 * 179.97438 * 6 5 4 8 8 H 1.07991 * 120.00265 * 186.20287 * 7 6 5 9 9 C 1.40388 * 119.99548 * 6.19582 * 7 6 5 10 10 N 1.30603 * 119.99751 * 183.91875 * 9 7 6 11 11 Si 1.86796 * 120.00085 * 3.91438 * 9 7 6 12 12 H 1.48500 * 109.47053 * 179.97438 * 11 9 7 13 13 H 1.48496 * 109.47449 * 300.00158 * 11 9 7 14 14 H 1.48501 * 109.46823 * 60.00403 * 11 9 7 15 15 C 1.39255 * 107.27220 * 0.22385 * 6 5 4 16 16 Br 1.89101 * 126.26015 * 179.75204 * 15 6 5 17 17 H 1.09000 * 109.47108 * 299.99882 * 1 2 3 18 18 H 1.09003 * 109.47326 * 60.00265 * 1 2 3 19 19 H 1.08996 * 109.47086 * 179.97438 * 1 2 3 20 20 H 0.96996 * 119.99740 * 179.97438 * 2 1 3 21 21 H 0.97001 * 120.00176 * 354.83794 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1612 1.2060 0.0000 4 7 1.6240 2.4015 0.0005 5 8 2.6592 3.3661 0.0009 6 6 3.8420 2.7118 0.0001 7 6 5.1134 3.2960 -0.0004 8 1 5.9922 2.6767 -0.1021 9 6 5.2465 4.6873 0.1313 10 7 6.4271 5.2405 0.0542 11 14 3.7351 5.7474 0.4166 12 1 4.1420 7.1717 0.5209 13 1 2.7935 5.5830 -0.7198 14 1 3.0685 5.3300 1.6762 15 6 3.5600 1.3481 -0.0060 16 35 4.8268 -0.0559 -0.0164 17 1 -0.3633 0.5138 0.8900 18 1 -0.3634 0.5138 -0.8900 19 1 -0.3633 -1.0276 -0.0005 20 1 1.9500 -0.8400 0.0004 21 1 7.2191 4.6853 -0.0189 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261045392.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:02 Heat of formation + Delta-G solvation = 21.378640 kcal Electronic energy + Delta-G solvation = -10848.650387 eV Core-core repulsion = 8579.537747 eV Total energy + Delta-G solvation = -2269.112640 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 245.974 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -39.82989 -35.62653 -34.07312 -31.20413 -30.33121 -28.60761 -25.97601 -24.77284 -20.31469 -19.82907 -18.45333 -16.21946 -14.96680 -14.62518 -14.37019 -13.74075 -13.38760 -13.23292 -12.52675 -11.82027 -11.70138 -11.23849 -10.62914 -10.49067 -9.94683 -9.86618 -9.60296 -9.41863 -9.06891 -7.86849 -7.71670 -7.45887 -5.23183 2.67448 3.02067 3.22431 3.41647 3.45185 3.78783 3.81142 3.95325 4.78748 5.02555 5.45288 5.84570 6.02152 6.05676 6.59116 6.72056 7.08336 7.56332 7.71573 7.92558 8.12149 8.22697 8.96959 9.57251 Molecular weight = 245.97amu Principal moments of inertia in cm(-1) A = 0.027273 B = 0.013142 C = 0.008931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.427724 B = 2130.076152 C = 3134.303078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.722 5.722 3 C 0.402 3.598 4 N -0.446 5.446 5 O -0.136 6.136 6 C 0.240 3.760 7 C -0.448 4.448 8 H 0.111 0.889 9 C 0.047 3.953 10 N -0.771 5.771 11 Si 1.065 2.935 12 H -0.278 1.278 13 H -0.252 1.252 14 H -0.264 1.264 15 C -0.440 4.440 16 Br -0.078 7.078 17 H 0.049 0.951 18 H 0.048 0.952 19 H 0.065 0.935 20 H 0.406 0.594 21 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.391 -7.732 0.225 8.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.366 5.366 3 C 0.143 3.857 4 N -0.226 5.226 5 O -0.134 6.134 6 C 0.181 3.819 7 C -0.478 4.478 8 H 0.128 0.872 9 C -0.179 4.179 10 N -0.392 5.392 11 Si 0.889 3.111 12 H -0.205 1.205 13 H -0.177 1.177 14 H -0.189 1.189 15 C -0.530 4.530 16 Br 0.003 6.997 17 H 0.067 0.933 18 H 0.067 0.933 19 H 0.084 0.916 20 H 0.242 0.758 21 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.509 -5.787 0.360 7.344 hybrid contribution 1.380 -2.349 -0.192 2.731 sum -3.128 -8.136 0.168 8.718 Atomic orbital electron populations 1.21370 0.80050 1.00968 1.01358 1.43331 1.05117 1.03623 1.84518 1.19337 0.89267 0.87708 0.89339 1.80353 1.02911 0.94451 1.44865 1.88937 1.12859 1.28382 1.83181 1.19760 0.87214 0.88888 0.86044 1.20366 0.91124 0.95127 1.41146 0.87164 1.27683 1.03762 0.96872 0.89563 1.70495 1.00041 1.41405 1.27297 0.83467 0.72175 0.74505 0.80947 1.20472 1.17676 1.18876 1.21401 0.88775 0.91153 1.51669 1.96139 1.58181 1.46118 1.99228 0.93274 0.93287 0.91571 0.75841 0.89368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.57 11.04 59.85 0.66 2.24 14 2 N -0.72 -13.25 5.90 -67.04 -0.40 -13.64 14 3 C 0.40 9.41 7.86 -155.34 -1.22 8.19 14 4 N -0.45 -11.41 12.55 31.27 0.39 -11.02 14 5 O -0.14 -3.67 7.59 6.60 0.05 -3.62 14 6 C 0.24 6.36 6.58 -38.57 -0.25 6.11 14 7 C -0.45 -11.68 9.58 -38.14 -0.37 -12.04 14 8 H 0.11 2.88 7.80 -52.49 -0.41 2.47 14 9 C 0.05 1.19 5.52 -17.27 -0.10 1.09 14 10 N -0.77 -19.20 13.64 55.57 0.76 -18.44 14 11 Si 1.07 24.17 25.98 -169.99 -4.42 19.75 14 12 H -0.28 -5.91 7.11 56.52 0.40 -5.51 14 13 H -0.25 -5.82 6.79 56.52 0.38 -5.44 14 14 H -0.26 -6.06 7.11 56.52 0.40 -5.66 14 15 C -0.44 -10.81 6.68 -38.31 -0.26 -11.07 14 16 Br -0.08 -1.61 33.33 -68.01 -2.27 -3.88 14 17 H 0.05 0.74 8.14 -51.93 -0.42 0.32 14 18 H 0.05 0.74 8.14 -51.93 -0.42 0.32 14 19 H 0.07 0.70 8.14 -51.93 -0.42 0.28 14 20 H 0.41 6.64 8.65 -40.82 -0.35 6.28 14 21 H 0.29 6.99 8.72 -40.82 -0.36 6.63 14 LS Contribution 216.87 15.07 3.27 3.27 Total: -1.00 -28.04 216.87 -5.34 -33.38 By element: Atomic # 1 Polarization: 0.90 SS G_CDS: -1.20 Total: -0.30 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -1.53 Total: -5.49 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: 0.76 Total: -43.11 kcal Atomic # 8 Polarization: -3.67 SS G_CDS: 0.05 Total: -3.62 kcal Atomic # 14 Polarization: 24.17 SS G_CDS: -4.42 Total: 19.75 kcal Atomic # 35 Polarization: -1.61 SS G_CDS: -2.27 Total: -3.88 kcal Total LS contribution 3.27 Total: 3.27 kcal Total: -28.04 -5.34 -33.38 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261045392.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.762 kcal (2) G-P(sol) polarization free energy of solvation -28.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds