Wall clock time and date at job start Mon Mar 30 2020 03:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.39252 * 119.99734 * 2 1 4 4 N 1.31067 * 125.80322 * 0.02562 * 3 2 1 5 5 O 1.41501 * 108.77997 * 179.97438 * 4 3 2 6 6 C 1.35171 * 108.06723 * 0.02562 * 5 4 3 7 7 C 1.39921 * 126.36791 * 179.97438 * 6 5 4 8 8 H 1.07991 * 120.00265 * 186.20287 * 7 6 5 9 9 C 1.40388 * 119.99548 * 6.19582 * 7 6 5 10 10 N 1.30603 * 119.99751 * 183.91875 * 9 7 6 11 11 Si 1.86796 * 120.00085 * 3.91438 * 9 7 6 12 12 H 1.48500 * 109.47053 * 179.97438 * 11 9 7 13 13 H 1.48496 * 109.47449 * 300.00158 * 11 9 7 14 14 H 1.48501 * 109.46823 * 60.00403 * 11 9 7 15 15 C 1.39255 * 107.27220 * 0.22385 * 6 5 4 16 16 Br 1.89101 * 126.26015 * 179.75204 * 15 6 5 17 17 H 1.09000 * 109.47108 * 299.99882 * 1 2 3 18 18 H 1.09003 * 109.47326 * 60.00265 * 1 2 3 19 19 H 1.08996 * 109.47086 * 179.97438 * 1 2 3 20 20 H 0.96996 * 119.99740 * 179.97438 * 2 1 3 21 21 H 0.97001 * 120.00176 * 354.83794 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1612 1.2060 0.0000 4 7 1.6240 2.4015 0.0005 5 8 2.6592 3.3661 0.0009 6 6 3.8420 2.7118 0.0001 7 6 5.1134 3.2960 -0.0004 8 1 5.9922 2.6767 -0.1021 9 6 5.2465 4.6873 0.1313 10 7 6.4271 5.2405 0.0542 11 14 3.7351 5.7474 0.4166 12 1 4.1420 7.1717 0.5209 13 1 2.7935 5.5830 -0.7198 14 1 3.0685 5.3300 1.6762 15 6 3.5600 1.3481 -0.0060 16 35 4.8268 -0.0559 -0.0164 17 1 -0.3633 0.5138 0.8900 18 1 -0.3634 0.5138 -0.8900 19 1 -0.3633 -1.0276 -0.0005 20 1 1.9500 -0.8400 0.0004 21 1 7.2191 4.6853 -0.0189 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261045392.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:02 Heat of formation + Delta-G solvation = 2.581508 kcal Electronic energy + Delta-G solvation = -10849.465492 eV Core-core repulsion = 8579.537747 eV Total energy + Delta-G solvation = -2269.927745 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 245.974 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -41.73388 -37.24722 -35.98674 -32.98403 -32.16793 -30.46855 -27.54512 -26.50051 -22.13271 -21.69838 -20.33044 -17.95178 -16.75816 -16.48957 -16.00848 -15.59564 -15.09856 -14.79211 -14.33575 -13.56244 -13.08788 -12.96080 -12.43637 -12.32111 -11.72391 -11.71869 -11.42416 -11.26143 -10.81600 -9.79295 -9.63035 -9.13232 -7.19150 0.72963 1.20105 1.38962 1.58295 1.65257 1.96500 2.04911 2.28432 2.82013 3.17955 4.15045 4.43238 4.66541 4.74737 4.85692 5.01546 5.12776 5.70773 5.77168 6.10326 6.29646 6.58117 7.15916 7.63181 Molecular weight = 245.97amu Principal moments of inertia in cm(-1) A = 0.027273 B = 0.013142 C = 0.008931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.427724 B = 2130.076152 C = 3134.303078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.710 5.710 3 C 0.401 3.599 4 N -0.466 5.466 5 O -0.155 6.155 6 C 0.220 3.780 7 C -0.463 4.463 8 H 0.103 0.897 9 C 0.028 3.972 10 N -0.777 5.777 11 Si 1.093 2.907 12 H -0.254 1.254 13 H -0.263 1.263 14 H -0.272 1.272 15 C -0.458 4.458 16 Br -0.045 7.045 17 H 0.044 0.956 18 H 0.043 0.957 19 H 0.114 0.886 20 H 0.417 0.583 21 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.023 -8.713 0.301 9.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.353 5.353 3 C 0.142 3.858 4 N -0.250 5.250 5 O -0.151 6.151 6 C 0.161 3.839 7 C -0.493 4.493 8 H 0.121 0.879 9 C -0.196 4.196 10 N -0.397 5.397 11 Si 0.915 3.085 12 H -0.179 1.179 13 H -0.188 1.188 14 H -0.198 1.198 15 C -0.548 4.548 16 Br 0.036 6.964 17 H 0.062 0.938 18 H 0.062 0.938 19 H 0.132 0.868 20 H 0.254 0.746 21 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.114 -6.793 0.434 8.514 hybrid contribution 1.559 -2.199 -0.225 2.705 sum -3.555 -8.992 0.209 9.671 Atomic orbital electron populations 1.21633 0.77594 1.04040 1.00827 1.43569 1.06653 1.02258 1.82865 1.19578 0.89284 0.88721 0.88223 1.80276 1.02819 0.95176 1.46684 1.88909 1.13258 1.29465 1.83494 1.20054 0.87263 0.90013 0.86557 1.20387 0.90936 0.95657 1.42286 0.87872 1.28282 1.04839 0.97223 0.89304 1.70501 1.00186 1.41493 1.27565 0.83109 0.70354 0.75130 0.79940 1.17877 1.18841 1.19762 1.21777 0.90323 0.91713 1.51001 1.96130 1.57071 1.43973 1.99181 0.93772 0.93805 0.86751 0.74609 0.89138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.70 11.04 127.77 1.41 4.11 14 2 N -0.71 -24.28 5.90 -366.00 -2.16 -26.43 14 3 C 0.40 18.28 7.86 133.73 1.05 19.34 14 4 N -0.47 -23.59 12.55 -54.99 -0.69 -24.28 14 5 O -0.16 -8.38 7.59 25.92 0.20 -8.19 14 6 C 0.22 11.65 6.58 22.92 0.15 11.80 14 7 C -0.46 -24.19 9.58 23.20 0.22 -23.97 14 8 H 0.10 5.41 7.80 -2.92 -0.02 5.38 14 9 C 0.03 1.38 5.52 85.40 0.47 1.85 14 10 N -0.78 -38.19 13.64 21.90 0.30 -37.89 14 11 Si 1.09 48.69 25.98 68.60 1.78 50.47 14 12 H -0.25 -10.17 7.11 99.48 0.71 -9.47 14 13 H -0.26 -12.10 6.79 99.48 0.68 -11.42 14 14 H -0.27 -12.38 7.11 99.48 0.71 -11.68 14 15 C -0.46 -22.14 6.68 23.09 0.15 -21.98 14 16 Br -0.05 -1.79 33.33 -20.37 -0.68 -2.47 14 17 H 0.04 1.23 8.14 -2.39 -0.02 1.21 14 18 H 0.04 1.22 8.14 -2.39 -0.02 1.20 14 19 H 0.11 1.92 8.14 -2.39 -0.02 1.90 14 20 H 0.42 12.37 8.65 -92.71 -0.80 11.57 14 21 H 0.30 13.99 8.72 -92.71 -0.81 13.18 14 Total: -1.00 -58.37 216.87 2.61 -55.76 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: 0.40 Total: 1.88 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: 3.46 Total: -8.85 kcal Atomic # 7 Polarization: -86.06 SS G_CDS: -2.55 Total: -88.61 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.20 Total: -8.19 kcal Atomic # 14 Polarization: 48.69 SS G_CDS: 1.78 Total: 50.47 kcal Atomic # 35 Polarization: -1.79 SS G_CDS: -0.68 Total: -2.47 kcal Total: -58.37 2.61 -55.76 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261045392.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.343 kcal (2) G-P(sol) polarization free energy of solvation -58.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds