Wall clock time and date at job start Mon Mar 30 2020 03:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86803 * 119.99591 * 2 1 4 4 H 1.48498 * 109.47238 * 179.72558 * 3 2 1 5 5 H 1.48498 * 109.47402 * 299.72944 * 3 2 1 6 6 H 1.48506 * 109.46858 * 59.72695 * 3 2 1 7 7 C 1.39942 * 120.00432 * 179.72833 * 2 1 3 8 8 H 1.07996 * 120.00006 * 207.12301 * 7 2 1 9 9 C 1.41399 * 119.99901 * 27.11814 * 7 2 1 10 10 C 1.40712 * 120.24150 * 204.85076 * 9 7 2 11 11 C 1.37624 * 119.74018 * 179.67927 * 10 9 7 12 12 C 1.38632 * 120.24667 * 0.62163 * 11 10 9 13 13 C 1.50700 * 119.74981 * 179.69872 * 12 11 10 14 14 C 1.51469 * 110.52500 * 54.54559 * 13 12 11 15 15 O 1.21280 * 126.83880 * 61.33482 * 14 13 12 16 16 N 1.34643 * 106.32311 * 241.37504 * 14 13 12 17 17 N 1.39206 * 111.68178 * 0.02562 * 16 14 13 18 18 C 1.34642 * 111.68742 * 359.97438 * 17 16 14 19 19 O 1.21281 * 126.84278 * 179.97438 * 18 17 16 20 20 C 1.38637 * 120.50732 * 359.67351 * 12 11 10 21 21 C 1.37623 * 120.24009 * 359.97438 * 20 12 11 22 22 H 0.97004 * 119.99615 * 184.17852 * 1 2 3 23 23 H 1.07996 * 120.12967 * 0.02562 * 10 9 7 24 24 H 1.08000 * 119.87633 * 180.32098 * 11 10 9 25 25 H 1.08996 * 110.47570 * 177.33967 * 13 12 11 26 26 H 0.96996 * 124.16212 * 180.02562 * 16 14 13 27 27 H 0.97000 * 124.16322 * 179.97438 * 17 16 14 28 28 H 1.07997 * 119.88067 * 180.02562 * 20 12 11 29 29 H 1.08006 * 120.12148 * 180.02562 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7021 1.3466 0.0067 5 1 1.8884 2.3937 -1.2158 6 1 1.8783 2.3994 1.2092 7 6 2.0081 -1.2119 0.0057 8 1 2.9989 -1.2612 0.4324 9 6 1.4177 -2.3718 -0.5470 10 6 1.8230 -3.6480 -0.1145 11 6 1.2368 -4.7699 -0.6547 12 6 0.2598 -4.6463 -1.6305 13 6 -0.3698 -5.8824 -2.2192 14 6 -0.9350 -6.7634 -1.1243 15 8 -1.8095 -6.4727 -0.3358 16 7 -0.2726 -7.9332 -1.2001 17 7 0.6701 -7.9250 -2.2243 18 6 0.6812 -6.7496 -2.8809 19 8 1.3917 -6.4454 -3.8156 20 6 -0.1429 -3.3941 -2.0685 21 6 0.4244 -2.2584 -1.5372 22 1 -0.4850 -0.8379 0.0612 23 1 2.5870 -3.7467 0.6423 24 1 1.5425 -5.7504 -0.3207 25 1 -1.1469 -5.6112 -2.9337 26 1 -0.4326 -8.6887 -0.6132 27 1 1.2480 -8.6739 -2.4387 28 1 -0.9052 -3.3095 -2.8288 29 1 0.1090 -1.2838 -1.8795 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261047215.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:02 Heat of formation + Delta-G solvation = -14.557166 kcal Electronic energy + Delta-G solvation = -17095.806253 eV Core-core repulsion = 14177.828950 eV Total energy + Delta-G solvation = -2917.977304 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.37754 -38.21648 -37.72768 -36.40929 -34.25505 -31.53217 -30.24515 -29.59400 -28.21775 -24.85866 -22.06986 -21.18587 -20.98141 -20.13564 -19.07264 -17.99161 -16.30821 -16.08705 -15.92372 -14.75287 -14.74314 -14.40084 -14.17449 -13.98789 -13.80116 -12.90710 -12.41921 -12.18605 -11.86332 -11.51219 -11.24855 -11.05672 -10.81390 -10.46859 -10.38707 -9.82107 -9.66583 -9.59587 -8.99355 -8.51190 -7.77186 -7.59737 -7.27367 -4.51814 1.87721 2.27163 2.55887 2.75904 2.86659 3.13437 3.21991 3.32842 3.80227 3.96959 4.30607 4.71938 4.85999 5.46115 5.47735 5.72596 5.92990 6.03639 6.15198 6.69700 6.85259 6.88258 7.02839 7.24031 7.30061 7.54316 7.67627 7.72455 7.77340 7.94125 8.11381 8.21485 8.22020 8.67093 8.79991 9.96721 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.041419 B = 0.005808 C = 0.005575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.862739 B = 4819.373797 C = 5021.415410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.038 3.962 3 Si 1.071 2.929 4 H -0.276 1.276 5 H -0.273 1.273 6 H -0.277 1.277 7 C -0.514 4.514 8 H 0.078 0.922 9 C 0.103 3.897 10 C -0.225 4.225 11 C -0.064 4.064 12 C -0.218 4.218 13 C -0.089 4.089 14 C 0.541 3.459 15 O -0.492 6.492 16 N -0.530 5.530 17 N -0.530 5.530 18 C 0.541 3.459 19 O -0.493 6.493 20 C -0.053 4.053 21 C -0.221 4.221 22 H 0.302 0.698 23 H 0.095 0.905 24 H 0.083 0.917 25 H 0.136 0.864 26 H 0.427 0.573 27 H 0.427 0.573 28 H 0.095 0.905 29 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.111 -11.071 -2.452 11.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.185 4.185 3 Si 0.894 3.106 4 H -0.200 1.200 5 H -0.198 1.198 6 H -0.203 1.203 7 C -0.541 4.541 8 H 0.097 0.903 9 C 0.099 3.901 10 C -0.244 4.244 11 C -0.083 4.083 12 C -0.220 4.220 13 C -0.114 4.114 14 C 0.326 3.674 15 O -0.362 6.362 16 N -0.287 5.287 17 N -0.286 5.286 18 C 0.327 3.673 19 O -0.363 6.363 20 C -0.072 4.072 21 C -0.241 4.241 22 H 0.116 0.884 23 H 0.113 0.887 24 H 0.101 0.899 25 H 0.153 0.847 26 H 0.271 0.729 27 H 0.271 0.729 28 H 0.113 0.887 29 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.310 -8.866 -2.620 9.250 hybrid contribution 0.429 -2.717 0.319 2.769 sum 0.119 -11.583 -2.302 11.810 Atomic orbital electron populations 1.70416 1.08280 1.34554 1.27736 1.27092 0.95648 1.04490 0.91271 0.83567 0.75544 0.73286 0.78183 1.20049 1.19812 1.20301 1.20688 1.04064 0.94221 1.35173 0.90346 1.17709 0.90289 0.92520 0.89540 1.20840 1.06242 0.92393 1.04949 1.20270 0.95675 0.96642 0.95672 1.17839 1.06794 0.89930 1.07442 1.20824 0.97933 0.95685 0.96926 1.20496 0.80639 0.80917 0.85311 1.90815 1.29971 1.74660 1.40706 1.45295 1.34702 1.18403 1.30292 1.45286 1.36208 1.18380 1.28774 1.20523 0.84217 0.80818 0.81787 1.90807 1.44110 1.74243 1.27151 1.20401 0.97427 0.91876 0.97453 1.21089 1.04391 0.96927 1.01647 0.88411 0.88669 0.89905 0.84686 0.72852 0.72862 0.88682 0.87376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.70 12.38 55.55 0.69 -20.01 15 2 C 0.04 0.96 4.90 -17.34 -0.08 0.87 15 3 Si 1.07 21.36 30.01 -169.99 -5.10 16.26 15 4 H -0.28 -5.27 7.11 56.52 0.40 -4.87 15 5 H -0.27 -5.33 7.11 56.52 0.40 -4.93 15 6 H -0.28 -5.36 7.11 56.52 0.40 -4.96 15 7 C -0.51 -13.55 8.98 -37.74 -0.34 -13.89 15 8 H 0.08 2.01 7.97 -52.49 -0.42 1.59 15 9 C 0.10 2.71 5.30 -106.83 -0.57 2.14 15 10 C -0.22 -5.54 9.80 -38.87 -0.38 -5.92 15 11 C -0.06 -1.44 8.88 -39.66 -0.35 -1.79 15 12 C -0.22 -4.70 4.93 -104.33 -0.51 -5.21 15 13 C -0.09 -1.54 3.24 -93.32 -0.30 -1.84 15 14 C 0.54 8.73 7.60 -10.67 -0.08 8.65 15 15 O -0.49 -9.59 18.03 5.56 0.10 -9.49 15 16 N -0.53 -6.04 7.08 31.40 0.22 -5.81 15 17 N -0.53 -6.01 7.08 31.40 0.22 -5.78 15 18 C 0.54 8.66 7.81 -10.66 -0.08 8.58 15 19 O -0.49 -9.49 18.03 5.56 0.10 -9.39 15 20 C -0.05 -1.21 9.65 -39.66 -0.38 -1.59 15 21 C -0.22 -5.62 7.97 -38.87 -0.31 -5.93 15 22 H 0.30 8.19 6.72 -40.82 -0.27 7.91 15 23 H 0.10 2.22 8.06 -52.49 -0.42 1.80 15 24 H 0.08 1.66 7.93 -52.49 -0.42 1.25 15 25 H 0.14 2.10 7.92 -51.93 -0.41 1.69 15 26 H 0.43 3.32 8.96 -183.27 -1.64 1.68 15 27 H 0.43 3.29 8.96 -183.27 -1.64 1.65 15 28 H 0.10 1.91 7.96 -52.49 -0.42 1.49 15 29 H 0.11 2.81 6.53 -52.48 -0.34 2.46 15 LS Contribution 263.99 15.07 3.98 3.98 Total: -1.00 -31.46 263.99 -7.97 -39.43 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -4.78 Total: 6.77 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: -3.40 Total: -15.94 kcal Atomic # 7 Polarization: -32.74 SS G_CDS: 1.13 Total: -31.61 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: 0.20 Total: -18.88 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.10 Total: 16.26 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -31.46 -7.97 -39.43 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261047215.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.869 kcal (2) G-P(sol) polarization free energy of solvation -31.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds