Wall clock time and date at job start Mon Mar 30 2020 03:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86803 * 119.99591 * 2 1 4 4 H 1.48498 * 109.47238 * 179.72558 * 3 2 1 5 5 H 1.48498 * 109.47402 * 299.72944 * 3 2 1 6 6 H 1.48506 * 109.46858 * 59.72695 * 3 2 1 7 7 C 1.39942 * 120.00432 * 179.72833 * 2 1 3 8 8 H 1.07996 * 120.00006 * 207.12301 * 7 2 1 9 9 C 1.41399 * 119.99901 * 27.11814 * 7 2 1 10 10 C 1.40712 * 120.24150 * 204.85076 * 9 7 2 11 11 C 1.37624 * 119.74018 * 179.67927 * 10 9 7 12 12 C 1.38632 * 120.24667 * 0.62163 * 11 10 9 13 13 C 1.50700 * 119.74981 * 179.69872 * 12 11 10 14 14 C 1.51469 * 110.52500 * 54.54559 * 13 12 11 15 15 O 1.21280 * 126.83880 * 61.33482 * 14 13 12 16 16 N 1.34643 * 106.32311 * 241.37504 * 14 13 12 17 17 N 1.39206 * 111.68178 * 0.02562 * 16 14 13 18 18 C 1.34642 * 111.68742 * 359.97438 * 17 16 14 19 19 O 1.21281 * 126.84278 * 179.97438 * 18 17 16 20 20 C 1.38637 * 120.50732 * 359.67351 * 12 11 10 21 21 C 1.37623 * 120.24009 * 359.97438 * 20 12 11 22 22 H 0.97004 * 119.99615 * 184.17852 * 1 2 3 23 23 H 1.07996 * 120.12967 * 0.02562 * 10 9 7 24 24 H 1.08000 * 119.87633 * 180.32098 * 11 10 9 25 25 H 1.08996 * 110.47570 * 177.33967 * 13 12 11 26 26 H 0.96996 * 124.16212 * 180.02562 * 16 14 13 27 27 H 0.97000 * 124.16322 * 179.97438 * 17 16 14 28 28 H 1.07997 * 119.88067 * 180.02562 * 20 12 11 29 29 H 1.08006 * 120.12148 * 180.02562 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7021 1.3466 0.0067 5 1 1.8884 2.3937 -1.2158 6 1 1.8783 2.3994 1.2092 7 6 2.0081 -1.2119 0.0057 8 1 2.9989 -1.2612 0.4324 9 6 1.4177 -2.3718 -0.5470 10 6 1.8230 -3.6480 -0.1145 11 6 1.2368 -4.7699 -0.6547 12 6 0.2598 -4.6463 -1.6305 13 6 -0.3698 -5.8824 -2.2192 14 6 -0.9350 -6.7634 -1.1243 15 8 -1.8095 -6.4727 -0.3358 16 7 -0.2726 -7.9332 -1.2001 17 7 0.6701 -7.9250 -2.2243 18 6 0.6812 -6.7496 -2.8809 19 8 1.3917 -6.4454 -3.8156 20 6 -0.1429 -3.3941 -2.0685 21 6 0.4244 -2.2584 -1.5372 22 1 -0.4850 -0.8379 0.0612 23 1 2.5870 -3.7467 0.6423 24 1 1.5425 -5.7504 -0.3207 25 1 -1.1469 -5.6112 -2.9337 26 1 -0.4326 -8.6887 -0.6132 27 1 1.2480 -8.6739 -2.4387 28 1 -0.9052 -3.3095 -2.8288 29 1 0.1090 -1.2838 -1.8795 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261047215.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:02 Heat of formation + Delta-G solvation = -37.783406 kcal Electronic energy + Delta-G solvation = -17096.813419 eV Core-core repulsion = 14177.828950 eV Total energy + Delta-G solvation = -2918.984469 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.67664 -39.57713 -39.55632 -37.72243 -36.08316 -33.18943 -31.45713 -31.40656 -29.93569 -26.66138 -23.64470 -23.01319 -22.25917 -21.72265 -20.25839 -19.89058 -17.74521 -17.30635 -17.25670 -16.51548 -16.17210 -16.12345 -15.78707 -15.48873 -15.34972 -14.47523 -14.24437 -14.01999 -13.62704 -13.06581 -12.85171 -12.72360 -12.43563 -12.00559 -11.88708 -11.52653 -11.43721 -11.18493 -10.82408 -9.67359 -9.64437 -9.46927 -9.22138 -6.50431 0.65844 0.88946 0.92819 0.93928 1.49302 1.50755 1.63382 1.80106 2.31193 2.52409 2.56062 3.17615 3.56104 3.61437 3.96657 4.18311 4.30416 4.47538 4.78416 4.97647 4.99907 5.13929 5.37415 5.64571 5.72753 5.76263 5.76570 5.89262 6.06874 6.19097 6.30972 6.67545 6.73014 6.87660 7.14670 7.98517 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.041419 B = 0.005808 C = 0.005575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.862739 B = 4819.373797 C = 5021.415410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.005 3.995 3 Si 1.122 2.878 4 H -0.264 1.264 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.553 4.553 8 H 0.073 0.927 9 C 0.074 3.926 10 C -0.244 4.244 11 C -0.067 4.067 12 C -0.203 4.203 13 C -0.102 4.102 14 C 0.545 3.455 15 O -0.526 6.526 16 N -0.501 5.501 17 N -0.501 5.501 18 C 0.546 3.454 19 O -0.525 6.525 20 C -0.063 4.063 21 C -0.239 4.239 22 H 0.285 0.715 23 H 0.099 0.901 24 H 0.110 0.890 25 H 0.154 0.846 26 H 0.451 0.549 27 H 0.451 0.549 28 H 0.121 0.879 29 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.334 -13.070 -2.883 13.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.212 4.212 3 Si 0.938 3.062 4 H -0.188 1.188 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.581 4.581 8 H 0.092 0.908 9 C 0.071 3.929 10 C -0.263 4.263 11 C -0.085 4.085 12 C -0.205 4.205 13 C -0.126 4.126 14 C 0.329 3.671 15 O -0.399 6.399 16 N -0.259 5.259 17 N -0.258 5.258 18 C 0.331 3.669 19 O -0.398 6.398 20 C -0.082 4.082 21 C -0.258 4.258 22 H 0.097 0.903 23 H 0.117 0.883 24 H 0.128 0.872 25 H 0.171 0.829 26 H 0.301 0.699 27 H 0.301 0.699 28 H 0.139 0.861 29 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.066 -10.984 -3.030 11.395 hybrid contribution 0.303 -2.378 0.385 2.427 sum 0.237 -13.362 -2.645 13.623 Atomic orbital electron populations 1.70535 1.08968 1.33319 1.30393 1.28486 0.95633 1.07530 0.89580 0.82956 0.74852 0.69513 0.78844 1.18826 1.18994 1.18990 1.20858 1.04359 0.95475 1.37373 0.90838 1.18044 0.91128 0.93485 0.90257 1.21062 1.06939 0.92710 1.05603 1.20569 0.95338 0.97167 0.95424 1.18239 1.05164 0.91342 1.05718 1.20891 0.99030 0.94659 0.98054 1.20052 0.80612 0.81899 0.84489 1.90820 1.31616 1.75683 1.41807 1.44960 1.33237 1.17866 1.29804 1.44952 1.35577 1.17858 1.27453 1.20039 0.83475 0.81771 0.81656 1.90813 1.45138 1.75225 1.28646 1.20772 0.97748 0.91794 0.97841 1.21091 1.05157 0.97270 1.02298 0.90272 0.88262 0.87155 0.82912 0.69933 0.69911 0.86062 0.88931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.16 12.38 21.83 0.27 -43.89 15 2 C 0.00 0.25 4.90 85.26 0.42 0.67 15 3 Si 1.12 43.51 30.01 68.60 2.06 45.57 15 4 H -0.26 -9.62 7.11 99.48 0.71 -8.91 15 5 H -0.27 -9.88 7.11 99.48 0.71 -9.18 15 6 H -0.27 -9.69 7.11 99.48 0.71 -8.98 15 7 C -0.55 -30.30 8.98 23.46 0.21 -30.09 15 8 H 0.07 3.93 7.97 -2.91 -0.02 3.91 15 9 C 0.07 4.02 5.30 -21.29 -0.11 3.90 15 10 C -0.24 -12.16 9.80 22.73 0.22 -11.93 15 11 C -0.07 -2.90 8.88 22.22 0.20 -2.71 15 12 C -0.20 -8.45 4.93 -19.67 -0.10 -8.55 15 13 C -0.10 -3.24 3.24 -12.54 -0.04 -3.28 15 14 C 0.54 15.88 7.60 87.92 0.67 16.54 15 15 O -0.53 -19.40 18.03 -3.03 -0.05 -19.45 15 16 N -0.50 -9.20 7.08 -173.04 -1.23 -10.42 15 17 N -0.50 -9.11 7.08 -173.04 -1.23 -10.34 15 18 C 0.55 15.69 7.81 87.93 0.69 16.38 15 19 O -0.53 -18.93 18.03 -3.03 -0.05 -18.98 15 20 C -0.06 -2.88 9.65 22.22 0.21 -2.66 15 21 C -0.24 -12.50 7.97 22.73 0.18 -12.32 15 22 H 0.29 16.26 6.72 -92.71 -0.62 15.63 15 23 H 0.10 4.72 8.06 -2.91 -0.02 4.69 15 24 H 0.11 4.11 7.93 -2.91 -0.02 4.09 15 25 H 0.15 4.31 7.92 -2.39 -0.02 4.29 15 26 H 0.45 4.80 8.96 -213.90 -1.92 2.88 15 27 H 0.45 4.69 8.96 -213.89 -1.92 2.77 15 28 H 0.12 4.76 7.96 -2.91 -0.02 4.74 15 29 H 0.09 5.04 6.53 -2.91 -0.02 5.02 15 Total: -1.00 -70.46 263.99 -0.15 -70.61 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: -2.47 Total: 20.96 kcal Atomic # 6 Polarization: -36.60 SS G_CDS: 2.55 Total: -34.05 kcal Atomic # 7 Polarization: -62.47 SS G_CDS: -2.18 Total: -64.65 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -0.11 Total: -38.44 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.06 Total: 45.57 kcal Total: -70.46 -0.15 -70.61 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261047215.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.832 kcal (2) G-P(sol) polarization free energy of solvation -70.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds