Wall clock time and date at job start Mon Mar 30 2020 04:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31364 * 120.15288 * 2 1 4 4 C 1.33618 * 122.75016 * 180.02562 * 3 2 1 5 5 N 1.33726 * 118.45368 * 180.02562 * 4 3 2 6 6 C 1.31406 * 121.44720 * 179.97438 * 5 4 3 7 7 C 1.40454 * 120.20059 * 0.13487 * 6 5 4 8 8 N 1.39968 * 120.56339 * 179.97438 * 7 6 5 9 9 C 1.36506 * 118.87356 * 359.90654 * 7 6 5 10 10 N 1.36547 * 119.12435 * 0.02562 * 9 7 6 11 11 C 1.35098 * 119.29542 * 180.02562 * 10 9 7 12 12 O 1.21785 * 120.96289 * 359.97438 * 11 10 9 13 13 C 1.41164 * 120.15793 * 180.02562 * 2 1 3 14 14 C 1.40487 * 121.20345 * 359.70123 * 13 2 1 15 15 H 1.08001 * 119.99877 * 324.49217 * 14 13 2 16 16 C 1.39894 * 120.00211 * 144.49365 * 14 13 2 17 17 N 1.30968 * 119.99743 * 339.46489 * 16 14 13 18 18 Si 1.86795 * 120.00299 * 159.46649 * 16 14 13 19 19 H 1.48497 * 109.47286 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46811 * 120.00007 * 18 16 14 21 21 H 1.48496 * 109.47177 * 239.99527 * 18 16 14 22 22 H 1.08994 * 109.46690 * 269.97771 * 1 2 3 23 23 H 1.09003 * 109.47204 * 29.97750 * 1 2 3 24 24 H 1.08995 * 109.46826 * 149.97404 * 1 2 3 25 25 H 1.08001 * 119.90070 * 180.02562 * 6 5 4 26 26 H 0.96993 * 119.99763 * 179.97438 * 8 7 6 27 27 H 0.96996 * 119.99667 * 359.97438 * 8 7 6 28 28 H 1.08002 * 120.43788 * 180.02562 * 9 7 6 29 29 H 0.97002 * 120.00380 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1669 1.1359 0.0000 4 6 3.5017 1.1964 -0.0005 5 7 4.0849 2.3998 0.0001 6 6 5.3927 2.5278 0.0001 7 6 6.2142 1.3886 -0.0033 8 7 7.6080 1.5161 -0.0038 9 6 5.6300 0.1548 -0.0047 10 7 4.2675 0.0645 -0.0033 11 6 3.6858 -1.1548 -0.0041 12 8 4.3585 -2.1700 -0.0066 13 6 2.2162 -1.2206 -0.0005 14 6 1.5429 -2.4536 0.0052 15 1 0.6183 -2.5614 0.5528 16 6 2.0701 -3.5417 -0.6985 17 7 2.9314 -3.3416 -1.6645 18 14 1.5454 -5.2801 -0.2603 19 1 0.5696 -5.2356 0.8582 20 1 0.9136 -5.9192 -1.4426 21 1 2.7353 -6.0674 0.1512 22 1 -0.3632 -0.0004 1.0276 23 1 -0.3634 0.8902 -0.5135 24 1 -0.3633 -0.8897 -0.5142 25 1 5.8373 3.5121 0.0010 26 1 8.1675 0.7238 -0.0058 27 1 8.0144 2.3968 -0.0022 28 1 6.2375 -0.7382 -0.0069 29 1 3.2967 -4.0960 -2.1527 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261056376.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:23 Heat of formation + Delta-G solvation = 28.914968 kcal Electronic energy + Delta-G solvation = -17565.798046 eV Core-core repulsion = 14681.998587 eV Total energy + Delta-G solvation = -2883.799459 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.70199 -39.50388 -38.04413 -36.36008 -35.42199 -34.85256 -32.22329 -30.45043 -28.59706 -27.77447 -25.21120 -24.32975 -22.97028 -20.62277 -19.44201 -19.16549 -18.51304 -17.29136 -16.95279 -16.57224 -16.34026 -16.02401 -15.58548 -14.95315 -14.53467 -14.29710 -14.13876 -13.73947 -13.51348 -13.16702 -12.94588 -12.88421 -12.59744 -12.08864 -11.97594 -11.56439 -11.30719 -11.07487 -10.56386 -10.28721 -9.27733 -8.89260 -8.26320 -6.16708 -0.47649 0.11840 1.33148 1.39610 1.54107 1.61476 1.87745 2.03529 2.14196 2.77103 2.95433 3.12448 3.48198 3.72486 3.90192 4.15677 4.32816 4.66563 4.85696 4.94475 4.99078 5.05674 5.12933 5.23343 5.48706 5.75066 5.94331 6.07284 6.42190 6.43771 6.47114 6.74792 7.06812 7.42278 7.71909 8.01623 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.028880 B = 0.008564 C = 0.006809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.309097 B = 3268.653679 C = 4111.184804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C -0.040 4.040 3 N -0.457 5.457 4 C 0.284 3.716 5 N -0.423 5.423 6 C 0.112 3.888 7 C 0.140 3.860 8 N -0.843 5.843 9 C -0.058 4.058 10 N -0.441 5.441 11 C 0.469 3.531 12 O -0.568 6.568 13 C -0.049 4.049 14 C -0.376 4.376 15 H 0.121 0.879 16 C 0.022 3.978 17 N -0.757 5.757 18 Si 0.995 3.005 19 H -0.238 1.238 20 H -0.253 1.253 21 H -0.277 1.277 22 H 0.066 0.934 23 H 0.062 0.938 24 H 0.072 0.928 25 H 0.219 0.781 26 H 0.406 0.594 27 H 0.419 0.581 28 H 0.149 0.851 29 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.160 3.929 1.755 6.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.177 4.177 3 N -0.176 5.176 4 C -0.057 4.057 5 N -0.134 5.134 6 C -0.081 4.081 7 C 0.030 3.970 8 N -0.389 5.389 9 C -0.192 4.192 10 N -0.158 5.158 11 C 0.268 3.732 12 O -0.449 6.449 13 C -0.059 4.059 14 C -0.404 4.404 15 H 0.139 0.861 16 C -0.201 4.201 17 N -0.378 5.378 18 Si 0.814 3.186 19 H -0.160 1.160 20 H -0.177 1.177 21 H -0.203 1.203 22 H 0.085 0.915 23 H 0.081 0.919 24 H 0.091 0.909 25 H 0.235 0.765 26 H 0.236 0.764 27 H 0.251 0.749 28 H 0.166 0.834 29 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.287 4.551 1.544 6.440 hybrid contribution 1.598 -2.151 -0.032 2.680 sum 5.885 2.401 1.512 6.533 Atomic orbital electron populations 1.20123 0.86941 1.02076 1.01679 1.21329 0.97379 0.85774 1.13203 1.66864 1.03495 1.30690 1.16600 1.20000 0.87903 0.81580 1.16168 1.67881 1.13211 1.20690 1.11597 1.23575 0.86951 0.99572 0.98018 1.17844 0.87904 0.91764 0.99528 1.41902 0.99742 1.12263 1.84947 1.21266 0.83957 0.99182 1.14769 1.43753 1.06970 1.09041 1.56026 1.19460 0.90595 0.81395 0.81787 1.90600 1.66018 1.33812 1.54515 1.20709 0.89256 0.96269 0.99695 1.19959 1.06782 0.93073 1.20542 0.86092 1.27160 0.93185 1.06880 0.92904 1.69841 1.18075 1.37044 1.12812 0.84950 0.79143 0.74016 0.80526 1.16008 1.17702 1.20278 0.91539 0.91944 0.90888 0.76500 0.76392 0.74860 0.83364 0.89279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -2.09 9.68 71.24 0.69 -1.40 15 2 C -0.04 -2.07 6.89 43.35 0.30 -1.77 15 3 N -0.46 -24.19 10.26 -184.30 -1.89 -26.08 15 4 C 0.28 14.50 8.28 261.28 2.16 16.66 15 5 N -0.42 -18.12 10.42 -196.76 -2.05 -20.17 15 6 C 0.11 3.49 11.16 85.30 0.95 4.44 15 7 C 0.14 4.38 6.76 37.98 0.26 4.64 15 8 N -0.84 -16.12 9.11 -51.66 -0.47 -16.59 15 9 C -0.06 -2.49 10.03 83.55 0.84 -1.65 15 10 N -0.44 -22.89 2.77 -475.98 -1.32 -24.21 15 11 C 0.47 27.12 7.09 86.52 0.61 27.73 15 12 O -0.57 -34.55 13.82 -4.62 -0.06 -34.62 15 13 C -0.05 -2.74 5.55 -19.68 -0.11 -2.85 15 14 C -0.38 -19.31 7.81 23.22 0.18 -19.13 15 15 H 0.12 5.51 7.44 -2.91 -0.02 5.49 15 16 C 0.02 1.09 4.61 85.22 0.39 1.48 15 17 N -0.76 -40.90 11.17 21.83 0.24 -40.66 15 18 Si 1.00 36.91 29.61 68.60 2.03 38.94 15 19 H -0.24 -8.08 7.11 99.48 0.71 -7.37 15 20 H -0.25 -8.60 7.11 99.48 0.71 -7.90 15 21 H -0.28 -10.65 7.11 99.48 0.71 -9.94 15 22 H 0.07 2.45 8.14 -2.39 -0.02 2.43 15 23 H 0.06 2.39 8.14 -2.39 -0.02 2.37 15 24 H 0.07 2.87 7.05 -2.39 -0.02 2.85 15 25 H 0.22 4.09 8.06 -2.91 -0.02 4.07 15 26 H 0.41 6.96 8.85 -92.71 -0.82 6.14 15 27 H 0.42 4.83 8.87 -92.71 -0.82 4.01 15 28 H 0.15 6.36 7.39 -2.91 -0.02 6.34 15 29 H 0.30 14.50 8.30 -92.71 -0.77 13.74 15 Total: -1.00 -75.34 258.57 2.34 -73.00 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: -0.41 Total: 22.22 kcal Atomic # 6 Polarization: 21.88 SS G_CDS: 6.28 Total: 28.16 kcal Atomic # 7 Polarization: -122.22 SS G_CDS: -5.49 Total: -127.71 kcal Atomic # 8 Polarization: -34.55 SS G_CDS: -0.06 Total: -34.62 kcal Atomic # 14 Polarization: 36.91 SS G_CDS: 2.03 Total: 38.94 kcal Total: -75.34 2.34 -73.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261056376.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.917 kcal (2) G-P(sol) polarization free energy of solvation -75.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds