Wall clock time and date at job start Mon Mar 30 2020 03:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35763 * 116.99852 * 2 1 4 4 N 1.36263 * 125.97121 * 359.97438 * 3 2 1 5 5 H 0.97007 * 125.89139 * 0.05377 * 4 3 2 6 6 N 1.40067 * 108.22217 * 180.02562 * 4 3 2 7 7 C 1.32924 * 108.07725 * 359.97438 * 6 4 3 8 8 C 1.41385 * 126.08361 * 179.97438 * 7 6 4 9 9 H 1.08002 * 120.00221 * 180.02562 * 8 7 6 10 10 C 1.39839 * 120.00045 * 359.74914 * 8 7 6 11 11 N 1.30904 * 119.99752 * 0.27895 * 10 8 7 12 12 Si 1.86803 * 120.00011 * 180.27329 * 10 8 7 13 13 H 1.48498 * 109.46867 * 90.00505 * 12 10 8 14 14 H 1.48494 * 109.46953 * 210.00458 * 12 10 8 15 15 H 1.48499 * 109.47135 * 330.00703 * 12 10 8 16 16 C 1.35329 * 125.97094 * 180.32025 * 3 2 1 17 17 Br 1.89101 * 126.09331 * 359.97368 * 16 3 2 18 18 H 1.08996 * 109.46704 * 299.99339 * 1 2 3 19 19 H 1.08999 * 109.46915 * 59.99277 * 1 2 3 20 20 H 1.08998 * 109.46736 * 179.97438 * 1 2 3 21 21 H 0.97005 * 119.99728 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 7 1.4261 2.4235 -0.0005 5 1 0.4676 2.5729 -0.0002 6 7 2.4122 3.4182 -0.0009 7 6 3.6000 2.8216 -0.0001 8 6 4.8570 3.4689 -0.0007 9 1 5.7653 2.8846 -0.0003 10 6 4.9242 4.8656 -0.0075 11 7 3.8232 5.5738 -0.0079 12 14 6.5849 5.7208 -0.0160 13 1 7.0212 5.9408 -1.4183 14 1 6.4718 7.0286 0.6782 15 1 7.5820 4.8727 0.6853 16 6 3.3821 1.4207 -0.0061 17 35 4.7208 0.0851 -0.0155 18 1 -0.3632 0.5137 0.8900 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 3.8699 6.5428 -0.0123 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261057091.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:04 Heat of formation + Delta-G solvation = 30.905538 kcal Electronic energy + Delta-G solvation = -10784.772747 eV Core-core repulsion = 8516.073224 eV Total energy + Delta-G solvation = -2268.699523 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 245.974 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -39.78635 -37.23183 -33.34036 -30.87298 -29.31827 -28.06801 -25.91655 -25.61922 -20.52865 -19.40113 -18.04317 -16.21367 -15.54890 -15.04925 -14.48887 -13.90832 -12.96956 -12.80077 -12.25097 -11.63996 -11.19324 -11.07142 -10.76672 -10.58289 -10.11126 -9.89377 -9.27018 -9.18910 -8.46162 -7.78909 -6.92123 -6.43112 -4.40259 3.01545 3.10441 3.15762 3.22647 3.27841 3.58818 4.13010 4.21547 4.38516 5.17769 5.23825 5.51812 5.56170 6.46552 6.59178 7.00568 7.34483 7.62745 8.35710 8.66077 8.80697 9.09042 9.67830 10.53631 Molecular weight = 245.97amu Principal moments of inertia in cm(-1) A = 0.029771 B = 0.011338 C = 0.008247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.291841 B = 2469.015654 C = 3394.154837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.301 6.301 3 C 0.274 3.726 4 N -0.539 5.539 5 H 0.415 0.585 6 N -0.315 5.315 7 C 0.250 3.750 8 C -0.434 4.434 9 H 0.090 0.910 10 C 0.072 3.928 11 N -0.770 5.770 12 Si 0.910 3.090 13 H -0.271 1.271 14 H -0.280 1.280 15 H -0.262 1.262 16 C -0.273 4.273 17 Br -0.062 7.062 18 H 0.050 0.950 19 H 0.050 0.950 20 H 0.100 0.900 21 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.835 -7.921 -0.009 8.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.208 6.208 3 C 0.102 3.898 4 N -0.255 5.255 5 H 0.256 0.744 6 N -0.150 5.150 7 C 0.097 3.903 8 C -0.473 4.473 9 H 0.108 0.892 10 C -0.148 4.148 11 N -0.397 5.397 12 Si 0.735 3.265 13 H -0.197 1.197 14 H -0.205 1.205 15 H -0.186 1.186 16 C -0.365 4.365 17 Br 0.020 6.980 18 H 0.069 0.931 19 H 0.069 0.931 20 H 0.118 0.882 21 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.998 -7.446 -0.010 8.027 hybrid contribution -0.088 0.079 -0.011 0.119 sum -3.086 -7.367 -0.020 7.988 Atomic orbital electron populations 1.22933 0.79468 1.03909 1.00899 1.86242 1.20266 1.23982 1.90338 1.19178 0.90742 0.79144 1.00699 1.47224 1.09206 1.02999 1.66048 0.74385 1.79150 0.93782 1.02564 1.39520 1.19048 0.93743 0.85816 0.91689 1.18734 0.90767 0.90836 1.47000 0.89210 1.25844 0.97830 0.97792 0.93348 1.69948 1.28105 1.06890 1.34785 0.86272 0.82515 0.78704 0.78979 1.19663 1.20540 1.18556 1.20542 0.87543 0.93886 1.34559 1.96223 1.52407 1.50659 1.98737 0.93146 0.93150 0.88185 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.30 101.05 1.04 1.35 14 2 O -0.30 -5.68 10.54 -19.00 -0.20 -5.88 14 3 C 0.27 6.17 7.77 -16.62 -0.13 6.04 14 4 N -0.54 -12.16 7.14 30.46 0.22 -11.94 14 5 H 0.42 7.61 8.30 -182.62 -1.52 6.09 14 6 N -0.32 -8.74 10.95 32.26 0.35 -8.39 14 7 C 0.25 6.99 6.76 -84.85 -0.57 6.42 14 8 C -0.43 -12.06 9.21 -37.79 -0.35 -12.40 14 9 H 0.09 2.39 7.63 -52.49 -0.40 1.99 14 10 C 0.07 1.92 5.49 -17.35 -0.10 1.82 14 11 N -0.77 -21.37 11.94 55.54 0.66 -20.71 14 12 Si 0.91 19.68 29.56 -169.99 -5.02 14.66 14 13 H -0.27 -5.77 7.11 56.52 0.40 -5.37 14 14 H -0.28 -5.92 7.11 56.52 0.40 -5.52 14 15 H -0.26 -5.55 7.11 56.52 0.40 -5.15 14 16 C -0.27 -6.85 6.58 -39.27 -0.26 -7.10 14 17 Br -0.06 -1.34 33.65 -68.01 -2.29 -3.63 14 18 H 0.05 0.60 8.14 -51.93 -0.42 0.17 14 19 H 0.05 0.59 8.14 -51.93 -0.42 0.17 14 20 H 0.10 0.98 8.14 -51.93 -0.42 0.56 14 21 H 0.27 6.92 8.30 -40.82 -0.34 6.58 14 LS Contribution 219.86 15.07 3.31 3.31 Total: -1.00 -31.28 219.86 -5.65 -36.93 By element: Atomic # 1 Polarization: 1.85 SS G_CDS: -2.32 Total: -0.47 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -0.36 Total: -3.88 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 1.23 Total: -41.04 kcal Atomic # 8 Polarization: -5.68 SS G_CDS: -0.20 Total: -5.88 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Atomic # 35 Polarization: -1.34 SS G_CDS: -2.29 Total: -3.63 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -31.28 -5.65 -36.93 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261057091.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.831 kcal (2) G-P(sol) polarization free energy of solvation -31.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds