Wall clock time and date at job start Mon Mar 30 2020 03:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35763 * 116.99852 * 2 1 4 4 N 1.36263 * 125.97121 * 359.97438 * 3 2 1 5 5 H 0.97007 * 125.89139 * 0.05377 * 4 3 2 6 6 N 1.40067 * 108.22217 * 180.02562 * 4 3 2 7 7 C 1.32924 * 108.07725 * 359.97438 * 6 4 3 8 8 C 1.41385 * 126.08361 * 179.97438 * 7 6 4 9 9 H 1.08002 * 120.00221 * 180.02562 * 8 7 6 10 10 C 1.39839 * 120.00045 * 359.74914 * 8 7 6 11 11 N 1.30904 * 119.99752 * 0.27895 * 10 8 7 12 12 Si 1.86803 * 120.00011 * 180.27329 * 10 8 7 13 13 H 1.48498 * 109.46867 * 90.00505 * 12 10 8 14 14 H 1.48494 * 109.46953 * 210.00458 * 12 10 8 15 15 H 1.48499 * 109.47135 * 330.00703 * 12 10 8 16 16 C 1.35329 * 125.97094 * 180.32025 * 3 2 1 17 17 Br 1.89101 * 126.09331 * 359.97368 * 16 3 2 18 18 H 1.08996 * 109.46704 * 299.99339 * 1 2 3 19 19 H 1.08999 * 109.46915 * 59.99277 * 1 2 3 20 20 H 1.08998 * 109.46736 * 179.97438 * 1 2 3 21 21 H 0.97005 * 119.99728 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0454 1.2097 0.0000 4 7 1.4261 2.4235 -0.0005 5 1 0.4676 2.5729 -0.0002 6 7 2.4122 3.4182 -0.0009 7 6 3.6000 2.8216 -0.0001 8 6 4.8570 3.4689 -0.0007 9 1 5.7653 2.8846 -0.0003 10 6 4.9242 4.8656 -0.0075 11 7 3.8232 5.5738 -0.0079 12 14 6.5849 5.7208 -0.0160 13 1 7.0212 5.9408 -1.4183 14 1 6.4718 7.0286 0.6782 15 1 7.5820 4.8727 0.6853 16 6 3.3821 1.4207 -0.0061 17 35 4.7208 0.0851 -0.0155 18 1 -0.3632 0.5137 0.8900 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 3.8699 6.5428 -0.0123 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261057091.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:04 Heat of formation + Delta-G solvation = 7.512369 kcal Electronic energy + Delta-G solvation = -10785.787150 eV Core-core repulsion = 8516.073224 eV Total energy + Delta-G solvation = -2269.713927 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 245.974 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.53959 -38.82984 -35.30353 -32.69008 -31.18717 -29.56486 -27.77463 -27.25524 -22.38523 -21.20275 -19.71188 -18.20312 -16.97006 -16.77333 -16.00312 -15.67860 -14.61517 -14.59500 -13.82013 -13.06688 -12.88863 -12.77798 -12.55140 -12.18687 -11.85374 -11.65754 -11.13851 -11.01827 -10.34009 -9.72200 -8.73726 -8.39064 -6.45574 1.23417 1.31871 1.45073 1.47792 1.62133 2.07612 2.26093 2.33810 2.75653 3.52949 4.19922 4.25960 4.58887 4.59917 4.91726 5.22479 5.39942 5.85299 6.36717 6.79603 6.92249 7.15489 7.72043 8.59546 Molecular weight = 245.97amu Principal moments of inertia in cm(-1) A = 0.029771 B = 0.011338 C = 0.008247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.291841 B = 2469.015654 C = 3394.154837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.307 6.307 3 C 0.297 3.703 4 N -0.529 5.529 5 H 0.432 0.568 6 N -0.355 5.355 7 C 0.224 3.776 8 C -0.465 4.465 9 H 0.091 0.909 10 C 0.027 3.973 11 N -0.807 5.807 12 Si 0.986 3.014 13 H -0.264 1.264 14 H -0.271 1.271 15 H -0.255 1.255 16 C -0.315 4.315 17 Br -0.038 7.038 18 H 0.062 0.938 19 H 0.062 0.938 20 H 0.137 0.863 21 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.906 -8.506 -0.012 8.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.214 6.214 3 C 0.124 3.876 4 N -0.248 5.248 5 H 0.276 0.724 6 N -0.190 5.190 7 C 0.071 3.929 8 C -0.504 4.504 9 H 0.109 0.891 10 C -0.190 4.190 11 N -0.435 5.435 12 Si 0.807 3.193 13 H -0.189 1.189 14 H -0.196 1.196 15 H -0.179 1.179 16 C -0.407 4.407 17 Br 0.043 6.957 18 H 0.081 0.919 19 H 0.081 0.919 20 H 0.155 0.845 21 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.109 -8.060 -0.013 8.639 hybrid contribution -0.236 0.116 -0.010 0.263 sum -3.345 -7.944 -0.023 8.619 Atomic orbital electron populations 1.23426 0.76024 1.06839 1.02126 1.86265 1.23699 1.21680 1.89726 1.19098 0.90391 0.80128 0.97945 1.47049 1.09657 1.02550 1.65557 0.72375 1.78992 0.94766 1.04727 1.40551 1.19400 0.94016 0.87545 0.91960 1.19062 0.91065 0.91933 1.48324 0.89113 1.26777 1.01887 0.98063 0.92262 1.70047 1.30496 1.07425 1.35502 0.85139 0.77352 0.77542 0.79287 1.18899 1.19612 1.17908 1.20748 0.89480 0.93848 1.36619 1.96177 1.51672 1.49010 1.98792 0.91907 0.91918 0.84506 0.91143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 10.30 113.37 1.17 1.40 14 2 O -0.31 -10.91 10.54 -90.90 -0.96 -11.86 14 3 C 0.30 13.10 7.77 83.33 0.65 13.75 14 4 N -0.53 -23.55 7.14 -168.25 -1.20 -24.75 14 5 H 0.43 15.31 8.30 -213.33 -1.77 13.54 14 6 N -0.35 -19.91 10.95 -51.85 -0.57 -20.47 14 7 C 0.22 12.71 6.76 40.63 0.27 12.98 14 8 C -0.46 -26.17 9.21 23.43 0.22 -25.96 14 9 H 0.09 4.88 7.63 -2.91 -0.02 4.86 14 10 C 0.03 1.44 5.49 85.22 0.47 1.91 14 11 N -0.81 -45.32 11.94 21.81 0.26 -45.06 14 12 Si 0.99 40.28 29.56 68.60 2.03 42.31 14 13 H -0.26 -10.41 7.11 99.48 0.71 -9.70 14 14 H -0.27 -10.59 7.11 99.48 0.71 -9.88 14 15 H -0.26 -10.07 7.11 99.48 0.71 -9.36 14 16 C -0.32 -15.77 6.58 22.47 0.15 -15.63 14 17 Br -0.04 -1.63 33.65 -20.37 -0.69 -2.31 14 18 H 0.06 1.29 8.14 -2.39 -0.02 1.27 14 19 H 0.06 1.28 8.14 -2.39 -0.02 1.27 14 20 H 0.14 2.11 8.14 -2.39 -0.02 2.09 14 21 H 0.28 14.25 8.30 -92.70 -0.77 13.48 14 Total: -1.00 -67.43 219.86 1.30 -66.13 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -0.50 Total: 7.56 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: 2.92 Total: -11.55 kcal Atomic # 7 Polarization: -88.78 SS G_CDS: -1.51 Total: -90.28 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -0.96 Total: -11.86 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.31 kcal Atomic # 35 Polarization: -1.63 SS G_CDS: -0.69 Total: -2.31 kcal Total: -67.43 1.30 -66.13 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261057091.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.647 kcal (2) G-P(sol) polarization free energy of solvation -67.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds