Wall clock time and date at job start Mon Mar 30 2020 03:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.39283 * 119.53940 * 269.72510 * 10 9 7 12 12 C 1.36165 * 120.90812 * 179.71224 * 11 10 9 13 13 C 1.40458 * 119.75024 * 0.55969 * 12 11 10 14 14 N 1.34048 * 120.90674 * 179.68045 * 13 12 11 15 15 C 1.31555 * 119.77492 * 180.02562 * 14 13 12 16 16 O 1.35590 * 119.76481 * 180.02562 * 15 14 13 17 17 C 1.41176 * 120.47020 * 0.02562 * 15 14 13 18 18 O 1.35592 * 119.76184 * 179.97438 * 17 15 14 19 19 N 1.31547 * 120.47318 * 0.02562 * 17 15 14 20 20 C 1.34044 * 119.78087 * 359.97438 * 19 17 15 21 21 C 1.36166 * 119.54255 * 89.99921 * 10 9 7 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 24 24 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 25 25 H 1.08001 * 119.54500 * 0.02562 * 11 10 9 26 26 H 1.08000 * 120.12457 * 180.27854 * 12 11 10 27 27 H 0.96704 * 114.00168 * 269.98362 * 16 15 14 28 28 H 0.96697 * 114.00079 * 270.01960 * 18 17 15 29 29 H 1.07994 * 120.12725 * 359.97438 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.6721 -4.1650 -1.2244 12 6 3.5611 -5.1958 -1.2615 13 6 4.0327 -5.7529 -0.0615 14 7 4.9031 -6.7723 -0.0710 15 6 5.3299 -7.2775 1.0663 16 8 6.2107 -8.3083 1.0565 17 6 4.8774 -6.7540 2.2968 18 8 5.3263 -7.2860 3.4604 19 7 4.0225 -5.7545 2.3226 20 6 3.5781 -5.2287 1.1724 21 6 2.6664 -4.1602 1.1720 22 1 -0.4850 0.8401 -0.0004 23 1 0.6242 -2.5609 0.8844 24 1 0.6244 -2.5529 -0.8956 25 1 2.3086 -3.7417 -2.1491 26 1 3.8987 -5.5865 -2.2100 27 1 5.7947 -9.1812 1.0510 28 1 4.7849 -8.0141 3.7947 29 1 2.3123 -3.7496 2.1060 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261064306.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:31 Heat of formation + Delta-G solvation = -18.349999 kcal Electronic energy + Delta-G solvation = -16628.813722 eV Core-core repulsion = 13710.671949 eV Total energy + Delta-G solvation = -2918.141773 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.40008 -38.76974 -37.44107 -36.42539 -34.18615 -33.18361 -30.84188 -29.80666 -27.29464 -24.74589 -23.97378 -22.45493 -21.62404 -19.32626 -18.99487 -18.33977 -16.67853 -16.44690 -16.41095 -15.14957 -14.77206 -14.64411 -13.97173 -13.88569 -13.54844 -12.50519 -12.33829 -12.13538 -11.78514 -11.62573 -11.53285 -11.41410 -11.11782 -11.02260 -10.70894 -10.61495 -9.81359 -9.57127 -8.98790 -8.53460 -8.40168 -7.98844 -6.16186 -4.21368 0.36365 0.61781 2.15184 2.83632 3.18466 3.26981 3.31393 3.35166 3.52214 4.17821 4.27234 4.38299 4.58249 4.82773 5.19281 5.28379 5.39022 5.49010 5.75723 6.04415 6.18874 6.35376 6.55251 6.80546 6.91956 7.06908 7.35955 7.39726 7.41815 7.55432 7.76050 7.78537 8.13305 8.82985 9.43664 10.93496 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.038239 B = 0.005088 C = 0.004870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.065567 B = 5501.722069 C = 5748.000872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.058 0.942 9 C 0.045 3.955 10 C -0.007 4.007 11 C -0.076 4.076 12 C -0.096 4.096 13 C 0.077 3.923 14 N -0.430 5.430 15 C 0.260 3.740 16 O -0.467 6.467 17 C 0.273 3.727 18 O -0.468 6.468 19 N -0.433 5.433 20 C 0.104 3.896 21 C -0.102 4.102 22 H 0.265 0.735 23 H 0.036 0.964 24 H 0.037 0.963 25 H 0.139 0.861 26 H 0.136 0.864 27 H 0.397 0.603 28 H 0.398 0.602 29 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.357 -14.876 1.139 15.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.558 4.558 8 H 0.077 0.923 9 C 0.008 3.992 10 C -0.009 4.009 11 C -0.096 4.096 12 C -0.116 4.116 13 C -0.047 4.047 14 N -0.156 5.156 15 C 0.061 3.939 16 O -0.272 6.272 17 C 0.073 3.927 18 O -0.272 6.272 19 N -0.159 5.159 20 C -0.019 4.019 21 C -0.121 4.121 22 H 0.074 0.926 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.157 0.843 26 H 0.154 0.846 27 H 0.254 0.746 28 H 0.256 0.744 29 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.027 -13.868 1.073 15.159 hybrid contribution 0.000 0.122 0.195 0.230 sum 6.028 -13.746 1.268 15.063 Atomic orbital electron populations 1.69933 1.06043 1.27238 1.49702 1.24989 0.94910 0.99336 0.94802 0.86559 0.79542 0.82534 0.78878 1.20060 1.21125 1.20047 1.20963 0.93081 0.89554 1.52168 0.92325 1.18495 0.92352 0.89087 0.99256 1.20666 0.94795 0.94231 0.91206 1.21188 0.95061 0.94019 0.99306 1.20711 0.97865 0.96930 0.96062 1.19223 0.96007 0.94704 0.94757 1.68071 1.08265 1.10287 1.28942 1.20321 0.92704 0.92879 0.88042 1.84850 1.31043 1.15724 1.95590 1.20397 0.93025 0.93290 0.85989 1.84840 1.52156 1.53502 1.36745 1.68158 1.09220 1.08108 1.30389 1.19373 0.97977 0.97459 0.87102 1.20692 0.97054 0.94426 0.99954 0.92564 0.94545 0.94487 0.84325 0.84582 0.74622 0.74437 0.84156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.13 13.29 55.43 0.74 -24.39 15 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 3 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 15 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 15 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 7 C -0.52 -13.74 9.09 -34.44 -0.31 -14.05 15 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 15 9 C 0.04 1.06 5.07 -29.03 -0.15 0.91 15 10 C -0.01 -0.14 5.03 -104.98 -0.53 -0.66 15 11 C -0.08 -1.29 9.59 -39.94 -0.38 -1.67 15 12 C -0.10 -1.53 9.98 -39.49 -0.39 -1.92 15 13 C 0.08 1.33 6.59 -84.80 -0.56 0.78 15 14 N -0.43 -7.07 10.48 -10.72 -0.11 -7.18 15 15 C 0.26 3.80 7.79 -16.56 -0.13 3.67 15 16 O -0.47 -5.38 13.35 -32.78 -0.44 -5.82 15 17 C 0.27 4.09 7.79 -16.56 -0.13 3.97 15 18 O -0.47 -5.61 13.35 -32.78 -0.44 -6.05 15 19 N -0.43 -7.62 10.48 -10.73 -0.11 -7.74 15 20 C 0.10 1.91 6.59 -84.80 -0.56 1.35 15 21 C -0.10 -1.96 9.58 -39.49 -0.38 -2.34 15 22 H 0.26 7.09 8.31 -40.82 -0.34 6.75 15 23 H 0.04 0.90 8.07 -51.93 -0.42 0.48 15 24 H 0.04 0.89 8.08 -51.93 -0.42 0.47 15 25 H 0.14 2.13 8.06 -52.49 -0.42 1.71 15 26 H 0.14 1.81 8.06 -52.49 -0.42 1.39 15 27 H 0.40 2.16 9.06 45.56 0.41 2.58 15 28 H 0.40 2.35 9.06 45.56 0.41 2.76 15 29 H 0.14 2.70 8.06 -52.49 -0.42 2.27 15 LS Contribution 268.84 15.07 4.05 4.05 Total: -1.00 -32.38 268.84 -5.77 -38.15 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: -0.82 Total: 1.50 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -3.62 Total: -8.40 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 0.51 Total: -39.30 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: -0.88 Total: -11.87 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -32.38 -5.77 -38.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261064306.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.798 kcal (2) G-P(sol) polarization free energy of solvation -32.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds