Wall clock time and date at job start Mon Mar 30 2020 03:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81001 * 1 3 3 C 1.76197 * 100.00204 * 2 1 4 4 N 1.33003 * 120.44395 * 359.97438 * 3 2 1 5 5 C 1.32511 * 121.13356 * 179.97438 * 4 3 2 6 6 O 1.35465 * 118.95920 * 180.02562 * 5 4 3 7 7 N 1.31875 * 122.07546 * 0.28772 * 5 4 3 8 8 C 1.34271 * 120.75250 * 359.43915 * 7 5 4 9 9 C 1.41437 * 120.60725 * 180.27543 * 8 7 5 10 10 H 1.07996 * 119.99750 * 180.26966 * 9 8 7 11 11 C 1.40070 * 119.99598 * 0.26737 * 9 8 7 12 12 N 1.30706 * 120.00344 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99941 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46798 * 90.00312 * 13 11 9 15 15 H 1.48499 * 109.47147 * 210.00389 * 13 11 9 16 16 H 1.48500 * 109.46978 * 330.00291 * 13 11 9 17 17 C 1.39765 * 120.44805 * 179.97438 * 3 2 1 18 18 Cl 1.73595 * 120.93229 * 0.04043 * 17 3 2 19 19 H 1.08996 * 109.47124 * 180.02562 * 1 2 3 20 20 H 1.09007 * 109.46617 * 299.99757 * 1 2 3 21 21 H 1.08999 * 109.47457 * 60.00076 * 1 2 3 22 22 H 0.96696 * 113.99993 * 90.00478 * 6 5 4 23 23 H 0.97000 * 120.00280 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 1.1039 2.5980 -0.0005 5 6 1.3183 3.9057 0.0000 6 8 0.2548 4.7447 0.0000 7 7 2.5343 4.4159 -0.0046 8 6 3.6139 3.6176 0.0013 9 6 4.9167 4.1682 0.0022 10 1 5.7781 3.5168 0.0025 11 6 5.0895 5.5582 0.0026 12 7 4.0468 6.3464 0.0026 13 14 6.8101 6.2855 0.0045 14 1 7.2674 6.4784 -1.3951 15 1 6.7932 7.5948 0.7048 16 1 7.7374 5.3612 0.7053 17 6 3.4256 2.2234 0.0005 18 17 4.7819 1.1399 0.0002 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8901 21 1 -0.3634 0.5138 -0.8900 22 1 -0.0542 4.9881 0.8833 23 1 4.1665 7.3090 0.0033 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261071918.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:29 Heat of formation + Delta-G solvation = -9.839543 kcal Electronic energy + Delta-G solvation = -13449.520523 eV Core-core repulsion = 10836.234718 eV Total energy + Delta-G solvation = -2613.285805 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 245.997 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.27159 -36.37062 -35.23713 -34.26084 -31.79279 -29.66154 -28.46172 -26.71948 -22.98815 -22.11521 -18.83304 -17.47501 -16.60892 -15.68579 -15.27535 -14.81184 -14.57523 -13.56760 -13.29026 -13.17884 -12.61141 -12.13829 -11.53629 -11.49767 -11.33449 -10.86273 -10.81228 -10.49740 -10.29151 -10.19830 -9.88628 -9.76656 -9.17446 -8.19297 -7.70097 -7.03365 -6.75232 -5.07689 2.10554 2.20748 2.44070 2.77706 2.93946 2.97320 3.01322 3.37638 3.71465 4.27198 4.61801 5.36001 5.51649 5.64477 5.92322 6.17586 6.22292 6.58671 6.74717 7.01220 7.74915 7.91883 8.30640 8.36719 8.64206 9.67532 9.90164 Molecular weight = 246.00amu Principal moments of inertia in cm(-1) A = 0.028004 B = 0.009456 C = 0.007101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.600455 B = 2960.489603 C = 3942.402346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 S -0.088 6.088 3 C 0.193 3.807 4 N -0.627 5.627 5 C 0.495 3.505 6 O -0.472 6.472 7 N -0.510 5.510 8 C 0.288 3.712 9 C -0.383 4.383 10 H 0.104 0.896 11 C 0.062 3.938 12 N -0.689 5.689 13 Si 0.918 3.082 14 H -0.264 1.264 15 H -0.272 1.272 16 H -0.255 1.255 17 C -0.218 4.218 18 Cl -0.080 7.080 19 H 0.088 0.912 20 H 0.082 0.918 21 H 0.083 0.917 22 H 0.393 0.607 23 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.993 -4.222 1.693 4.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 S 0.148 5.852 3 C -0.058 4.058 4 N -0.366 5.366 5 C 0.185 3.815 6 O -0.273 6.273 7 N -0.242 5.242 8 C 0.160 3.840 9 C -0.416 4.416 10 H 0.122 0.878 11 C -0.168 4.168 12 N -0.309 5.309 13 Si 0.741 3.259 14 H -0.188 1.188 15 H -0.197 1.197 16 H -0.179 1.179 17 C -0.262 4.262 18 Cl -0.052 7.052 19 H 0.107 0.893 20 H 0.101 0.899 21 H 0.102 0.898 22 H 0.248 0.752 23 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.062 -4.460 1.077 4.709 hybrid contribution 0.351 0.978 0.463 1.137 sum -0.711 -3.482 1.541 3.873 Atomic orbital electron populations 1.23275 0.95515 1.04498 1.06569 1.85504 1.06331 1.00891 1.92431 1.22264 0.89512 0.96890 0.97084 1.67840 1.33291 1.03806 1.31635 1.20368 0.85948 0.83408 0.91780 1.84615 1.45568 1.64209 1.32942 1.69090 0.96176 1.36909 1.21989 1.18252 0.92609 0.84451 0.88668 1.19956 0.91783 0.92131 1.37759 0.87779 1.26271 0.99587 0.97428 0.93495 1.70091 1.31302 1.05368 1.24151 0.86121 0.81030 0.78982 0.79801 1.18843 1.19674 1.17882 1.21934 0.86478 0.92374 1.25400 1.98210 1.45635 1.63827 1.97549 0.89295 0.89925 0.89837 0.75163 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 9.68 101.05 0.98 -1.03 14 2 S -0.09 -1.66 21.77 -107.50 -2.34 -4.00 14 3 C 0.19 4.51 7.01 -16.47 -0.12 4.39 14 4 N -0.63 -15.02 9.30 -13.54 -0.13 -15.14 14 5 C 0.50 12.38 8.69 -91.47 -0.80 11.59 14 6 O -0.47 -10.24 13.64 -18.09 -0.25 -10.49 14 7 N -0.51 -13.76 8.06 -12.72 -0.10 -13.86 14 8 C 0.29 7.61 6.58 -84.66 -0.56 7.06 14 9 C -0.38 -9.63 8.88 -37.68 -0.33 -9.96 14 10 H 0.10 2.46 6.77 -52.49 -0.36 2.10 14 11 C 0.06 1.45 5.50 -17.34 -0.10 1.36 14 12 N -0.69 -17.12 11.52 55.55 0.64 -16.48 14 13 Si 0.92 17.21 29.56 -169.99 -5.02 12.18 14 14 H -0.26 -4.90 7.11 56.52 0.40 -4.50 14 15 H -0.27 -4.95 7.11 56.52 0.40 -4.55 14 16 H -0.26 -4.70 7.11 56.52 0.40 -4.30 14 17 C -0.22 -5.33 6.45 -38.09 -0.25 -5.58 14 18 Cl -0.08 -1.71 26.59 -51.86 -1.38 -3.09 14 19 H 0.09 1.08 8.14 -51.92 -0.42 0.66 14 20 H 0.08 1.31 8.14 -51.91 -0.42 0.89 14 21 H 0.08 1.36 8.13 -51.92 -0.42 0.94 14 22 H 0.39 6.37 9.06 45.56 0.41 6.78 14 23 H 0.28 6.27 8.29 -40.82 -0.34 5.93 14 LS Contribution 243.07 15.07 3.66 3.66 Total: -1.00 -29.00 243.07 -6.43 -35.43 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -0.34 Total: 3.95 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: -1.17 Total: 7.83 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: 0.41 Total: -45.48 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: -0.25 Total: -10.49 kcal Atomic # 14 Polarization: 17.21 SS G_CDS: -5.02 Total: 12.18 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.34 Total: -4.00 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -1.38 Total: -3.09 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -29.00 -6.43 -35.43 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261071918.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.589 kcal (2) G-P(sol) polarization free energy of solvation -29.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds