Wall clock time and date at job start Mon Mar 30 2020 03:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35550 * 117.00351 * 2 1 4 4 N 1.32702 * 120.39950 * 0.26337 * 3 2 1 5 5 C 1.32783 * 121.15288 * 180.28355 * 4 3 2 6 6 S 1.76199 * 119.01433 * 179.71650 * 5 4 3 7 7 N 1.32104 * 121.97498 * 359.43822 * 5 4 3 8 8 C 1.34170 * 120.66665 * 0.28021 * 7 5 4 9 9 C 1.41447 * 120.60447 * 179.97438 * 8 7 5 10 10 H 1.07999 * 120.00083 * 179.97438 * 9 8 7 11 11 C 1.40073 * 119.99981 * 359.97438 * 9 8 7 12 12 N 1.30693 * 120.00028 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 119.99993 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47280 * 89.99617 * 13 11 9 15 15 H 1.48498 * 109.47277 * 209.99766 * 13 11 9 16 16 H 1.48503 * 109.47009 * 330.00095 * 13 11 9 17 17 C 1.39446 * 120.40523 * 179.97438 * 3 2 1 18 18 Cl 1.73600 * 120.89110 * 359.97438 * 17 3 2 19 19 H 1.09004 * 109.46708 * 60.00349 * 1 2 3 20 20 H 1.09002 * 109.46930 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47278 * 300.00577 * 1 2 3 22 22 H 1.40995 * 100.00352 * 269.73083 * 6 5 4 23 23 H 0.97004 * 120.00381 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2077 0.0000 4 7 1.3296 2.3257 0.0053 5 6 1.9169 3.5166 -0.0003 6 16 0.9129 4.9646 -0.0004 7 7 3.2313 3.6484 -0.0002 8 6 4.0274 2.5684 -0.0001 9 6 5.4346 2.7111 -0.0006 10 1 6.0662 1.8350 -0.0001 11 6 6.0091 3.9886 -0.0018 12 7 5.2448 5.0487 -0.0029 13 14 7.8675 4.1770 -0.0031 14 1 8.3591 4.2260 -1.4036 15 1 8.2382 5.4336 0.6958 16 1 8.4827 3.0210 0.6971 17 6 3.4365 1.2905 0.0005 18 17 4.4146 -0.1438 0.0019 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 0.7734 5.1657 -1.3890 23 1 5.6425 5.9335 -0.0040 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261095175.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:28 Heat of formation + Delta-G solvation = -19.674420 kcal Electronic energy + Delta-G solvation = -13522.556204 eV Core-core repulsion = 10908.843926 eV Total energy + Delta-G solvation = -2613.712278 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 245.997 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.27788 -39.05730 -37.07441 -35.97282 -33.23293 -32.01456 -29.09848 -27.53326 -24.88642 -23.76709 -20.49376 -19.23428 -18.36309 -17.43019 -17.03763 -16.92022 -16.40055 -15.70045 -15.26675 -14.89999 -14.46570 -13.26837 -13.12227 -13.05306 -12.95370 -12.78874 -12.36435 -12.11926 -12.00172 -11.69419 -11.44664 -11.20040 -10.48755 -9.76342 -9.52366 -9.07070 -8.57905 -6.95048 0.03071 0.54179 0.80548 1.41740 1.46480 1.57419 1.61984 1.73738 2.14557 2.27069 2.63787 3.50024 3.70402 4.32862 4.47532 4.52308 4.67855 4.74894 4.88067 5.06697 5.89812 6.08663 6.35308 6.52943 6.65386 7.64975 8.16843 Molecular weight = 246.00amu Principal moments of inertia in cm(-1) A = 0.020724 B = 0.010910 C = 0.007186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.797797 B = 2565.949758 C = 3895.285374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.313 6.313 3 C 0.357 3.643 4 N -0.630 5.630 5 C 0.310 3.690 6 S -0.052 6.052 7 N -0.492 5.492 8 C 0.243 3.757 9 C -0.396 4.396 10 H 0.109 0.891 11 C 0.021 3.979 12 N -0.718 5.718 13 Si 0.994 3.006 14 H -0.258 1.258 15 H -0.261 1.261 16 H -0.252 1.252 17 C -0.269 4.269 18 Cl -0.069 7.069 19 H 0.051 0.949 20 H 0.127 0.873 21 H 0.052 0.948 22 H 0.111 0.889 23 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.860 -2.018 -0.764 2.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.220 6.220 3 C 0.173 3.827 4 N -0.372 5.372 5 C -0.072 4.072 6 S 0.101 5.899 7 N -0.218 5.218 8 C 0.115 3.885 9 C -0.428 4.428 10 H 0.127 0.873 11 C -0.205 4.205 12 N -0.337 5.337 13 Si 0.812 3.188 14 H -0.183 1.183 15 H -0.185 1.185 16 H -0.176 1.176 17 C -0.305 4.305 18 Cl -0.041 7.041 19 H 0.070 0.930 20 H 0.145 0.855 21 H 0.071 0.929 22 H 0.075 0.925 23 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.733 -0.668 -0.514 2.860 hybrid contribution 1.282 -1.426 -0.934 2.133 sum -1.451 -2.094 -1.448 2.930 Atomic orbital electron populations 1.23002 0.76163 1.04292 1.01953 1.86210 1.24188 1.23763 1.87826 1.19674 0.87762 0.85470 0.89774 1.68447 1.39277 0.97266 1.32190 1.24082 0.91976 0.93670 0.97436 1.85947 1.63065 1.28001 1.12895 1.70078 1.02046 1.30684 1.18955 1.18940 0.95161 0.84416 0.89941 1.20288 0.89600 0.95410 1.37456 0.87339 1.27181 1.06401 0.94412 0.92554 1.70117 1.39874 1.00113 1.23622 0.85010 0.74164 0.79658 0.79970 1.18265 1.18463 1.17582 1.21561 0.88756 0.89681 1.30493 1.98180 1.70876 1.37272 1.97783 0.93050 0.85508 0.92886 0.92503 0.89419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.25 10.41 113.37 1.18 2.43 14 2 O -0.31 -12.94 10.04 -88.56 -0.89 -13.83 14 3 C 0.36 17.15 7.53 84.85 0.64 17.79 14 4 N -0.63 -30.17 9.31 -309.44 -2.88 -33.05 14 5 C 0.31 15.30 7.91 180.49 1.43 16.73 14 6 S -0.05 -2.04 26.14 -56.49 -1.48 -3.52 14 7 N -0.49 -26.48 7.99 -190.05 -1.52 -28.00 14 8 C 0.24 13.00 6.58 40.20 0.26 13.27 14 9 C -0.40 -19.91 8.88 23.51 0.21 -19.71 14 10 H 0.11 5.15 6.77 -2.91 -0.02 5.13 14 11 C 0.02 0.99 5.50 85.31 0.47 1.46 14 12 N -0.72 -34.93 11.52 21.84 0.25 -34.68 14 13 Si 0.99 34.15 29.56 68.60 2.03 36.18 14 14 H -0.26 -8.58 7.11 99.48 0.71 -7.87 14 15 H -0.26 -8.45 7.11 99.48 0.71 -7.74 14 16 H -0.25 -8.47 7.11 99.48 0.71 -7.77 14 17 C -0.27 -13.52 6.45 23.19 0.15 -13.37 14 18 Cl -0.07 -3.01 27.20 -2.72 -0.07 -3.08 14 19 H 0.05 1.59 8.12 -2.38 -0.02 1.57 14 20 H 0.13 2.81 8.14 -2.39 -0.02 2.79 14 21 H 0.05 1.65 8.11 -2.39 -0.02 1.63 14 22 H 0.11 3.88 9.55 73.80 0.70 4.58 14 23 H 0.29 12.67 8.29 -92.71 -0.77 11.90 14 Total: -1.00 -58.91 245.30 1.76 -57.15 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: 1.98 Total: 4.22 kcal Atomic # 6 Polarization: 14.26 SS G_CDS: 4.34 Total: 18.60 kcal Atomic # 7 Polarization: -91.58 SS G_CDS: -4.15 Total: -95.72 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: -0.89 Total: -13.83 kcal Atomic # 14 Polarization: 34.15 SS G_CDS: 2.03 Total: 36.18 kcal Atomic # 16 Polarization: -2.04 SS G_CDS: -1.48 Total: -3.52 kcal Atomic # 17 Polarization: -3.01 SS G_CDS: -0.07 Total: -3.08 kcal Total: -58.91 1.76 -57.15 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261095175.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.475 kcal (2) G-P(sol) polarization free energy of solvation -58.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds