Wall clock time and date at job start Mon Mar 30 2020 04:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31471 * 120.14625 * 2 1 4 4 C 1.33392 * 122.41549 * 179.97438 * 3 2 1 5 5 C 1.39982 * 119.70027 * 180.02562 * 4 3 2 6 6 C 1.38846 * 118.53982 * 179.97438 * 5 4 3 7 7 N 1.38015 * 119.98217 * 179.97438 * 6 5 4 8 8 N 1.33981 * 120.03392 * 0.02562 * 6 5 4 9 9 C 1.30399 * 121.58529 * 359.97438 * 8 6 5 10 10 N 1.35955 * 121.45410 * 359.97438 * 9 8 6 11 11 C 1.35060 * 119.93472 * 180.28510 * 10 9 8 12 12 O 1.21773 * 120.99000 * 0.02769 * 11 10 9 13 13 C 1.41167 * 120.14448 * 179.97438 * 2 1 3 14 14 C 1.40516 * 121.06635 * 0.02680 * 13 2 1 15 15 H 1.07994 * 120.00121 * 327.59420 * 14 13 2 16 16 C 1.39805 * 120.00107 * 147.59224 * 14 13 2 17 17 N 1.31032 * 120.00113 * 330.99983 * 16 14 13 18 18 Si 1.86800 * 119.99840 * 150.99520 * 16 14 13 19 19 H 1.48506 * 109.46965 * 180.02562 * 18 16 14 20 20 H 1.48500 * 109.47096 * 300.00003 * 18 16 14 21 21 H 1.48503 * 109.47307 * 60.00301 * 18 16 14 22 22 H 1.09000 * 109.47172 * 270.02227 * 1 2 3 23 23 H 1.08993 * 109.47208 * 30.02848 * 1 2 3 24 24 H 1.09002 * 109.47258 * 150.02782 * 1 2 3 25 25 H 1.08004 * 120.72632 * 359.97438 * 5 4 3 26 26 H 0.96996 * 120.00233 * 0.02562 * 7 6 5 27 27 H 0.97002 * 120.00195 * 179.97438 * 7 6 5 28 28 H 1.07998 * 119.27132 * 180.02562 * 9 8 6 29 29 H 0.97003 * 119.99649 * 355.29588 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1672 1.1369 0.0000 4 6 3.5001 1.1897 0.0005 5 6 4.1450 2.4321 0.0010 6 6 5.5332 2.4590 0.0021 7 7 6.1996 3.6676 0.0021 8 7 6.2261 1.3123 0.0021 9 6 5.6286 0.1532 0.0016 10 7 4.2726 0.0541 0.0016 11 6 3.6858 -1.1623 0.0069 12 8 4.3536 -2.1806 0.0122 13 6 2.2159 -1.2208 0.0005 14 6 1.5392 -2.4522 0.0005 15 1 0.5869 -2.5451 0.5014 16 6 2.0986 -3.5573 -0.6479 17 7 2.8838 -3.3818 -1.6821 18 14 1.7268 -5.2839 -0.0397 19 1 2.4366 -6.2722 -0.8912 20 1 2.1849 -5.4230 1.3660 21 1 0.2639 -5.5294 -0.1103 22 1 -0.3633 0.0004 1.0277 23 1 -0.3633 0.8897 -0.5142 24 1 -0.3634 -0.8902 -0.5134 25 1 3.5751 3.3496 0.0006 26 1 5.6982 4.4979 0.0017 27 1 7.1694 3.6867 0.0032 28 1 6.2240 -0.7478 0.0020 29 1 3.0226 -2.4910 -2.0400 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261097486.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:07:27 Heat of formation + Delta-G solvation = 17.026385 kcal Electronic energy + Delta-G solvation = -17576.937905 eV Core-core repulsion = 14692.622918 eV Total energy + Delta-G solvation = -2884.314987 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.04876 -39.89519 -38.26072 -36.87840 -35.45850 -33.86041 -32.87642 -30.40439 -29.48774 -27.08021 -25.11556 -24.40752 -23.30416 -20.92337 -19.34329 -19.29142 -19.05040 -17.40478 -17.28303 -16.58595 -16.04743 -15.81106 -15.58333 -15.20284 -14.85983 -14.41235 -14.36827 -14.07749 -13.55527 -13.11177 -12.91731 -12.76252 -12.35719 -12.14638 -11.94011 -11.64862 -11.22029 -10.72152 -10.54420 -10.38299 -9.80342 -9.34283 -8.51087 -6.07681 -0.44618 -0.11783 1.38547 1.45850 1.53540 1.59568 1.79010 2.03587 2.31723 2.43760 2.75641 3.30098 3.32769 3.49662 3.88853 4.15190 4.38742 4.56181 4.73216 4.81393 4.96674 5.06526 5.21172 5.30423 5.54109 5.62551 5.73859 5.87372 6.23010 6.31339 6.43163 6.64169 7.01884 7.16217 7.53651 7.89521 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.033621 B = 0.008006 C = 0.006689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.607865 B = 3496.696911 C = 4185.274624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 C -0.047 4.047 3 N -0.493 5.493 4 C 0.233 3.767 5 C -0.247 4.247 6 C 0.360 3.640 7 N -0.821 5.821 8 N -0.529 5.529 9 C 0.369 3.631 10 N -0.475 5.475 11 C 0.474 3.526 12 O -0.552 6.552 13 C -0.092 4.092 14 C -0.465 4.465 15 H 0.102 0.898 16 C 0.001 3.999 17 N -0.764 5.764 18 Si 1.117 2.883 19 H -0.275 1.275 20 H -0.272 1.272 21 H -0.242 1.242 22 H 0.060 0.940 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.161 0.839 26 H 0.423 0.577 27 H 0.412 0.588 28 H 0.218 0.782 29 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.534 7.543 2.397 8.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.176 4.176 3 N -0.213 5.213 4 C -0.008 4.008 5 C -0.280 4.280 6 C 0.137 3.863 7 N -0.364 5.364 8 N -0.250 5.250 9 C 0.083 3.917 10 N -0.193 5.193 11 C 0.274 3.726 12 O -0.432 6.432 13 C -0.101 4.101 14 C -0.493 4.493 15 H 0.120 0.880 16 C -0.219 4.219 17 N -0.383 5.383 18 Si 0.933 3.067 19 H -0.200 1.200 20 H -0.197 1.197 21 H -0.165 1.165 22 H 0.078 0.922 23 H 0.081 0.919 24 H 0.082 0.918 25 H 0.178 0.822 26 H 0.256 0.744 27 H 0.243 0.757 28 H 0.234 0.766 29 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.484 6.266 2.067 7.461 hybrid contribution -0.295 1.331 0.200 1.377 sum 3.189 7.597 2.267 8.545 Atomic orbital electron populations 1.20061 0.87973 1.01603 1.01142 1.21152 0.97072 0.86221 1.13128 1.67359 1.03679 1.29717 1.20497 1.19500 0.87311 0.85433 1.08549 1.20495 0.92082 0.95498 1.19876 1.18058 0.88239 0.86725 0.93274 1.41602 1.10160 1.02802 1.81837 1.67671 1.37694 0.96843 1.22829 1.25080 0.81433 0.97658 0.87489 1.44898 1.08704 1.09795 1.55893 1.19726 0.90902 0.81347 0.80612 1.90759 1.66457 1.33118 1.52874 1.20487 0.88679 0.96531 1.04408 1.20433 1.06680 0.93962 1.28187 0.88006 1.28499 0.91071 1.10082 0.92289 1.70587 1.24352 1.27163 1.16226 0.83024 0.78713 0.68432 0.76538 1.19970 1.19691 1.16511 0.92168 0.91915 0.91771 0.82195 0.74407 0.75694 0.76601 0.91901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -2.06 9.65 71.23 0.69 -1.37 15 2 C -0.05 -2.31 6.89 43.33 0.30 -2.01 15 3 N -0.49 -23.56 10.16 -179.18 -1.82 -25.38 15 4 C 0.23 10.48 7.33 133.53 0.98 11.46 15 5 C -0.25 -8.85 9.90 22.84 0.23 -8.63 15 6 C 0.36 11.14 7.77 132.85 1.03 12.17 15 7 N -0.82 -16.25 9.02 -55.35 -0.50 -16.75 15 8 N -0.53 -17.96 10.40 -195.83 -2.04 -20.00 15 9 C 0.37 14.31 11.33 180.00 2.04 16.35 15 10 N -0.48 -21.96 2.77 -475.67 -1.32 -23.28 15 11 C 0.47 25.14 6.66 86.53 0.58 25.71 15 12 O -0.55 -30.96 13.85 -4.58 -0.06 -31.03 15 13 C -0.09 -4.91 5.22 -19.67 -0.10 -5.01 15 14 C -0.46 -24.15 7.82 23.20 0.18 -23.97 15 15 H 0.10 4.91 7.33 -2.91 -0.02 4.88 15 16 C 0.00 0.06 4.33 85.19 0.37 0.43 15 17 N -0.76 -42.32 12.04 21.81 0.26 -42.06 15 18 Si 1.12 43.46 30.02 68.60 2.06 45.52 15 19 H -0.27 -10.73 7.11 99.48 0.71 -10.02 15 20 H -0.27 -10.42 7.11 99.48 0.71 -9.71 15 21 H -0.24 -8.06 7.11 99.48 0.71 -7.36 15 22 H 0.06 2.25 8.14 -2.39 -0.02 2.23 15 23 H 0.06 2.34 8.14 -2.39 -0.02 2.32 15 24 H 0.06 2.60 6.97 -2.39 -0.02 2.59 15 25 H 0.16 4.94 8.06 -2.91 -0.02 4.92 15 26 H 0.42 5.97 8.82 -92.71 -0.82 5.16 15 27 H 0.41 6.67 8.95 -92.71 -0.83 5.84 15 28 H 0.22 7.73 7.35 -2.91 -0.02 7.70 15 29 H 0.27 15.79 7.20 -92.71 -0.67 15.12 15 Total: -1.00 -66.72 257.45 2.55 -64.16 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: -0.32 Total: 23.67 kcal Atomic # 6 Polarization: 18.84 SS G_CDS: 6.29 Total: 25.13 kcal Atomic # 7 Polarization: -122.05 SS G_CDS: -5.41 Total: -127.47 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -0.06 Total: -31.03 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.06 Total: 45.52 kcal Total: -66.72 2.55 -64.16 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261097486.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.191 kcal (2) G-P(sol) polarization free energy of solvation -66.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds