Wall clock time and date at job start Mon Mar 30 2020 03:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31430 * 1 3 3 Si 1.86806 * 120.00014 * 2 1 4 4 H 1.48500 * 109.47446 * 270.00130 * 3 2 1 5 5 H 1.48506 * 109.46893 * 30.00019 * 3 2 1 6 6 H 1.48503 * 109.47322 * 149.99883 * 3 2 1 7 7 C 1.38846 * 120.00348 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00280 * 179.97438 * 7 2 1 9 9 N 1.37056 * 119.99692 * 359.97438 * 7 2 1 10 10 N 1.40277 * 126.63451 * 359.97438 * 9 7 2 11 11 C 1.29498 * 107.83810 * 180.02562 * 10 9 7 12 12 C 1.50703 * 125.36954 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47064 * 359.97438 * 12 11 10 14 14 C 1.38233 * 120.00099 * 269.72899 * 13 12 11 15 15 C 1.38239 * 119.99655 * 179.76882 * 14 13 12 16 16 C 1.38230 * 120.00228 * 0.50243 * 15 14 13 17 17 C 1.38238 * 119.99995 * 359.75228 * 16 15 14 18 18 C 1.38238 * 120.00072 * 359.97438 * 17 16 15 19 19 O 1.34688 * 109.26312 * 0.22246 * 11 10 9 20 20 C 1.34407 * 108.87170 * 359.62934 * 19 11 10 21 21 O 1.21627 * 126.35423 * 180.16417 * 20 19 11 22 22 H 0.97004 * 119.99662 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47152 * 239.99716 * 12 11 10 24 24 H 1.09001 * 109.46980 * 119.99817 * 12 11 10 25 25 H 1.08003 * 119.99927 * 359.97438 * 14 13 12 26 26 H 1.08000 * 119.99431 * 180.23215 * 15 14 13 27 27 H 1.07997 * 120.00220 * 179.73036 * 16 15 14 28 28 H 1.08002 * 119.99952 * 179.97438 * 17 16 15 29 29 H 1.07991 * 120.00062 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4958 2.0465 -1.4000 5 1 1.4457 2.6527 0.7001 6 1 3.5459 1.4403 0.7001 7 6 2.0086 -1.2024 -0.0005 8 1 3.0886 -1.2024 -0.0010 9 7 1.3233 -2.3893 -0.0005 10 7 -0.0700 -2.5514 0.0005 11 6 -0.3217 -3.8217 0.0006 12 6 -1.6966 -4.4387 0.0022 13 6 -2.7366 -3.3480 0.0041 14 6 -3.2160 -2.8523 1.2021 15 6 -4.1665 -1.8485 1.2038 16 6 -4.6451 -1.3477 0.0076 17 6 -4.1694 -1.8471 -1.1905 18 6 -3.2148 -2.8470 -1.1922 19 8 0.8393 -4.5046 0.0047 20 6 1.8588 -3.6289 -0.0010 21 8 3.0440 -3.9022 -0.0023 22 1 -0.4850 0.8401 0.0004 23 1 -1.8167 -5.0564 0.8922 24 1 -1.8188 -5.0561 -0.8877 25 1 -2.8456 -3.2469 2.1368 26 1 -4.5383 -1.4586 2.1398 27 1 -5.3908 -0.5665 0.0089 28 1 -4.5436 -1.4561 -2.1251 29 1 -2.8436 -3.2374 -2.1281 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261130862.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:48 Heat of formation + Delta-G solvation = 23.959794 kcal Electronic energy + Delta-G solvation = -17302.352285 eV Core-core repulsion = 14386.045202 eV Total energy + Delta-G solvation = -2916.307083 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.94964 -38.85324 -36.42543 -35.19381 -33.41584 -32.30282 -30.51778 -29.71170 -27.35701 -25.10693 -22.41798 -22.22687 -21.16652 -20.33433 -18.42331 -16.49740 -16.37736 -15.66289 -15.16169 -14.93984 -14.79905 -14.68131 -14.03747 -13.55156 -13.10420 -12.73991 -12.66515 -12.11394 -11.79403 -11.76551 -11.33210 -10.90864 -10.88206 -10.75527 -10.65621 -10.54246 -10.22004 -9.30701 -9.07339 -8.49884 -8.37375 -7.88081 -6.48943 -4.18641 1.68481 1.82193 2.86227 3.06312 3.09248 3.16342 3.36658 3.65821 3.84900 4.16680 4.36113 4.97097 5.04442 5.15810 5.32424 5.42473 5.59913 5.69018 5.78509 5.93452 5.99018 6.26209 6.37121 6.40494 6.80247 6.85439 6.86056 6.96253 7.26514 7.37958 7.88580 8.31899 8.74575 9.16716 9.47775 10.51167 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.018390 B = 0.009628 C = 0.006786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.238317 B = 2907.576474 C = 4125.320936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.045 3.955 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.315 4.315 8 H 0.123 0.877 9 N -0.253 5.253 10 N -0.171 5.171 11 C 0.101 3.899 12 C 0.032 3.968 13 C -0.066 4.066 14 C -0.093 4.093 15 C -0.119 4.119 16 C -0.119 4.119 17 C -0.119 4.119 18 C -0.093 4.093 19 O -0.284 6.284 20 C 0.515 3.485 21 O -0.547 6.547 22 H 0.272 0.728 23 H 0.095 0.905 24 H 0.095 0.905 25 H 0.117 0.883 26 H 0.116 0.884 27 H 0.114 0.886 28 H 0.116 0.884 29 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.294 -2.118 0.015 11.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.168 4.168 3 Si 0.759 3.241 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.443 4.443 8 H 0.141 0.859 9 N -0.069 5.069 10 N -0.006 5.006 11 C -0.120 4.120 12 C -0.007 4.007 13 C -0.066 4.066 14 C -0.112 4.112 15 C -0.137 4.137 16 C -0.137 4.137 17 C -0.137 4.137 18 C -0.111 4.111 19 O -0.181 6.181 20 C 0.271 3.729 21 O -0.438 6.438 22 H 0.082 0.918 23 H 0.113 0.887 24 H 0.113 0.887 25 H 0.135 0.865 26 H 0.134 0.866 27 H 0.132 0.868 28 H 0.134 0.866 29 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.138 -1.496 0.022 11.238 hybrid contribution 0.831 0.315 -0.007 0.888 sum -10.308 -1.181 0.015 10.375 Atomic orbital electron populations 1.70169 1.05545 1.27698 1.39596 1.25481 0.95872 0.99721 0.95690 0.85805 0.79421 0.79955 0.78875 1.19749 1.20278 1.18871 1.19631 0.91611 0.78810 1.54221 0.85937 1.45702 1.00909 1.05815 1.54476 1.78046 0.94919 1.11939 1.15698 1.25915 0.88211 0.87759 1.10078 1.18688 0.82471 0.95198 1.04348 1.19242 0.96043 0.97562 0.93733 1.20896 0.96380 0.96676 0.97202 1.20972 0.97888 0.97079 0.97767 1.21019 1.00285 0.99605 0.92782 1.20976 0.97860 0.97135 0.97750 1.20894 0.96320 0.96670 0.97227 1.84830 1.16020 1.38400 1.78809 1.19204 0.84812 0.80612 0.88256 1.90948 1.09054 1.80958 1.62861 0.91772 0.88677 0.88667 0.86511 0.86625 0.86777 0.86622 0.86510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.52 11.86 55.49 0.66 -20.86 15 2 C 0.04 1.18 5.50 -17.50 -0.10 1.08 15 3 Si 0.94 19.84 29.55 -169.99 -5.02 14.81 15 4 H -0.27 -5.68 7.11 56.52 0.40 -5.28 15 5 H -0.28 -5.75 7.11 56.52 0.40 -5.34 15 6 H -0.26 -5.53 7.11 56.52 0.40 -5.13 15 7 C -0.32 -8.88 10.14 -14.99 -0.15 -9.03 15 8 H 0.12 3.39 7.83 -52.49 -0.41 2.97 15 9 N -0.25 -7.15 3.71 -15.40 -0.06 -7.21 15 10 N -0.17 -4.39 9.67 32.49 0.31 -4.08 15 11 C 0.10 2.21 8.09 -13.26 -0.11 2.10 15 12 C 0.03 0.50 5.97 -29.03 -0.17 0.32 15 13 C -0.07 -1.06 4.58 -104.62 -0.48 -1.54 15 14 C -0.09 -1.46 9.70 -39.58 -0.38 -1.84 15 15 C -0.12 -1.73 10.05 -39.58 -0.40 -2.13 15 16 C -0.12 -1.67 10.05 -39.58 -0.40 -2.07 15 17 C -0.12 -1.73 10.05 -39.58 -0.40 -2.13 15 18 C -0.09 -1.45 9.70 -39.58 -0.38 -1.84 15 19 O -0.28 -6.92 10.71 -19.83 -0.21 -7.14 15 20 C 0.51 14.40 9.19 54.17 0.50 14.90 15 21 O -0.55 -16.33 17.89 -18.94 -0.34 -16.67 15 22 H 0.27 6.82 8.31 -40.82 -0.34 6.48 15 23 H 0.09 1.23 8.08 -51.93 -0.42 0.81 15 24 H 0.10 1.23 8.09 -51.93 -0.42 0.81 15 25 H 0.12 1.67 8.06 -52.48 -0.42 1.25 15 26 H 0.12 1.41 8.06 -52.49 -0.42 0.99 15 27 H 0.11 1.31 8.06 -52.49 -0.42 0.89 15 28 H 0.12 1.41 8.06 -52.49 -0.42 0.99 15 29 H 0.12 1.67 8.06 -52.49 -0.42 1.25 15 LS Contribution 270.31 15.07 4.07 4.07 Total: -1.00 -32.98 270.31 -5.56 -38.53 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -2.50 Total: 0.69 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -2.47 Total: -2.16 kcal Atomic # 7 Polarization: -33.06 SS G_CDS: 0.91 Total: -32.15 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.55 Total: -23.81 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -32.98 -5.56 -38.53 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261130862.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.494 kcal (2) G-P(sol) polarization free energy of solvation -32.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds