Wall clock time and date at job start Mon Mar 30 2020 03:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31430 * 1 3 3 Si 1.86806 * 120.00014 * 2 1 4 4 H 1.48500 * 109.47446 * 270.00130 * 3 2 1 5 5 H 1.48506 * 109.46893 * 30.00019 * 3 2 1 6 6 H 1.48503 * 109.47322 * 149.99883 * 3 2 1 7 7 C 1.38846 * 120.00348 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00280 * 179.97438 * 7 2 1 9 9 N 1.37056 * 119.99692 * 359.97438 * 7 2 1 10 10 N 1.40277 * 126.63451 * 359.97438 * 9 7 2 11 11 C 1.29498 * 107.83810 * 180.02562 * 10 9 7 12 12 C 1.50703 * 125.36954 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47064 * 359.97438 * 12 11 10 14 14 C 1.38233 * 120.00099 * 269.72899 * 13 12 11 15 15 C 1.38239 * 119.99655 * 179.76882 * 14 13 12 16 16 C 1.38230 * 120.00228 * 0.50243 * 15 14 13 17 17 C 1.38238 * 119.99995 * 359.75228 * 16 15 14 18 18 C 1.38238 * 120.00072 * 359.97438 * 17 16 15 19 19 O 1.34688 * 109.26312 * 0.22246 * 11 10 9 20 20 C 1.34407 * 108.87170 * 359.62934 * 19 11 10 21 21 O 1.21627 * 126.35423 * 180.16417 * 20 19 11 22 22 H 0.97004 * 119.99662 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47152 * 239.99716 * 12 11 10 24 24 H 1.09001 * 109.46980 * 119.99817 * 12 11 10 25 25 H 1.08003 * 119.99927 * 359.97438 * 14 13 12 26 26 H 1.08000 * 119.99431 * 180.23215 * 15 14 13 27 27 H 1.07997 * 120.00220 * 179.73036 * 16 15 14 28 28 H 1.08002 * 119.99952 * 179.97438 * 17 16 15 29 29 H 1.07991 * 120.00062 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4958 2.0465 -1.4000 5 1 1.4457 2.6527 0.7001 6 1 3.5459 1.4403 0.7001 7 6 2.0086 -1.2024 -0.0005 8 1 3.0886 -1.2024 -0.0010 9 7 1.3233 -2.3893 -0.0005 10 7 -0.0700 -2.5514 0.0005 11 6 -0.3217 -3.8217 0.0006 12 6 -1.6966 -4.4387 0.0022 13 6 -2.7366 -3.3480 0.0041 14 6 -3.2160 -2.8523 1.2021 15 6 -4.1665 -1.8485 1.2038 16 6 -4.6451 -1.3477 0.0076 17 6 -4.1694 -1.8471 -1.1905 18 6 -3.2148 -2.8470 -1.1922 19 8 0.8393 -4.5046 0.0047 20 6 1.8588 -3.6289 -0.0010 21 8 3.0440 -3.9022 -0.0023 22 1 -0.4850 0.8401 0.0004 23 1 -1.8167 -5.0564 0.8922 24 1 -1.8188 -5.0561 -0.8877 25 1 -2.8456 -3.2469 2.1368 26 1 -4.5383 -1.4586 2.1398 27 1 -5.3908 -0.5665 0.0089 28 1 -4.5436 -1.4561 -2.1251 29 1 -2.8436 -3.2374 -2.1281 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261130862.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:48 Heat of formation + Delta-G solvation = 2.374963 kcal Electronic energy + Delta-G solvation = -17303.288274 eV Core-core repulsion = 14386.045202 eV Total energy + Delta-G solvation = -2917.243071 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.94692 -40.00845 -38.52118 -37.21910 -34.93571 -34.18193 -31.63703 -31.49133 -28.89607 -27.00608 -24.23533 -23.35782 -22.97231 -21.78207 -20.41926 -18.37491 -17.85855 -17.51368 -17.08955 -16.72278 -16.11987 -16.01046 -15.73982 -15.26308 -14.42724 -14.12168 -13.90615 -13.70971 -13.67463 -13.26682 -13.03197 -12.86695 -12.61235 -12.31245 -12.07507 -11.92941 -11.77612 -11.40414 -11.00990 -9.91397 -9.63253 -9.54025 -8.47820 -6.30217 0.48802 0.68208 1.05596 1.25186 1.27071 1.46079 1.59405 1.66529 2.14966 2.40837 3.00771 3.08802 3.56084 4.04598 4.09263 4.25506 4.32880 4.38743 4.46869 4.60805 4.76919 4.89107 4.97373 5.20754 5.28900 5.28966 5.68160 5.74414 5.79217 5.84697 6.24978 6.28016 6.70159 7.12130 7.41968 8.53037 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.018390 B = 0.009628 C = 0.006786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.238317 B = 2907.576474 C = 4125.320936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.011 3.989 3 Si 1.010 2.990 4 H -0.263 1.263 5 H -0.264 1.264 6 H -0.262 1.262 7 C -0.359 4.359 8 H 0.113 0.887 9 N -0.267 5.267 10 N -0.207 5.207 11 C 0.137 3.863 12 C 0.030 3.970 13 C -0.084 4.084 14 C -0.110 4.110 15 C -0.129 4.129 16 C -0.122 4.122 17 C -0.129 4.129 18 C -0.109 4.109 19 O -0.279 6.279 20 C 0.492 3.508 21 O -0.584 6.584 22 H 0.279 0.721 23 H 0.130 0.870 24 H 0.130 0.870 25 H 0.124 0.876 26 H 0.136 0.864 27 H 0.140 0.860 28 H 0.136 0.864 29 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.012 -1.273 0.015 13.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.200 4.200 3 Si 0.830 3.170 4 H -0.188 1.188 5 H -0.188 1.188 6 H -0.186 1.186 7 C -0.486 4.486 8 H 0.130 0.870 9 N -0.082 5.082 10 N -0.041 5.041 11 C -0.084 4.084 12 C -0.008 4.008 13 C -0.085 4.085 14 C -0.128 4.128 15 C -0.147 4.147 16 C -0.140 4.140 17 C -0.147 4.147 18 C -0.127 4.127 19 O -0.175 6.175 20 C 0.249 3.751 21 O -0.478 6.478 22 H 0.089 0.911 23 H 0.148 0.852 24 H 0.148 0.852 25 H 0.142 0.858 26 H 0.154 0.846 27 H 0.158 0.842 28 H 0.154 0.846 29 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.896 -0.647 0.021 12.913 hybrid contribution 1.140 -0.012 -0.009 1.140 sum -11.757 -0.659 0.012 11.775 Atomic orbital electron populations 1.70261 1.06851 1.29055 1.38852 1.26447 0.96849 1.02602 0.94105 0.84723 0.78078 0.74934 0.79299 1.18829 1.18801 1.18645 1.19892 0.91808 0.79867 1.56997 0.86986 1.45868 1.02046 1.05754 1.54522 1.78043 0.93561 1.13846 1.18602 1.27475 0.89430 0.87096 1.04422 1.19198 0.78288 0.95593 1.07704 1.19347 0.96596 0.98337 0.94186 1.21156 0.96925 0.97219 0.97471 1.21315 0.97615 0.96778 0.99025 1.21400 1.00389 0.99791 0.92442 1.21317 0.97580 0.96825 0.99006 1.21154 0.96879 0.97220 0.97495 1.84833 1.16290 1.37841 1.78572 1.19312 0.85062 0.81116 0.89658 1.90880 1.10437 1.81607 1.64925 0.91125 0.85207 0.85191 0.85813 0.84634 0.84241 0.84626 0.85833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.83 11.86 21.64 0.26 -43.57 15 2 C 0.01 0.56 5.50 84.90 0.47 1.02 15 3 Si 1.01 40.23 29.55 68.60 2.03 42.25 15 4 H -0.26 -10.10 7.11 99.48 0.71 -9.39 15 5 H -0.26 -9.84 7.11 99.48 0.71 -9.14 15 6 H -0.26 -10.29 7.11 99.48 0.71 -9.58 15 7 C -0.36 -20.77 10.14 84.02 0.85 -19.92 15 8 H 0.11 6.46 7.83 -2.91 -0.02 6.44 15 9 N -0.27 -15.45 3.71 -432.84 -1.60 -17.05 15 10 N -0.21 -10.68 9.67 -165.88 -1.60 -12.28 15 11 C 0.14 5.90 8.09 88.45 0.72 6.61 15 12 C 0.03 0.87 5.97 29.10 0.17 1.04 15 13 C -0.08 -2.56 4.58 -19.86 -0.09 -2.65 15 14 C -0.11 -3.23 9.70 22.27 0.22 -3.01 15 15 C -0.13 -3.49 10.05 22.27 0.22 -3.26 15 16 C -0.12 -3.14 10.05 22.27 0.22 -2.92 15 17 C -0.13 -3.48 10.05 22.27 0.22 -3.26 15 18 C -0.11 -3.23 9.70 22.27 0.22 -3.01 15 19 O -0.28 -13.60 10.71 15.83 0.17 -13.43 15 20 C 0.49 28.29 9.19 129.75 1.19 29.48 15 21 O -0.58 -36.21 17.89 19.01 0.34 -35.87 15 22 H 0.28 13.70 8.31 -92.71 -0.77 12.93 15 23 H 0.13 2.90 8.08 -2.39 -0.02 2.88 15 24 H 0.13 2.90 8.09 -2.39 -0.02 2.88 15 25 H 0.12 3.33 8.06 -2.91 -0.02 3.31 15 26 H 0.14 2.99 8.06 -2.91 -0.02 2.96 15 27 H 0.14 2.78 8.06 -2.91 -0.02 2.75 15 28 H 0.14 2.99 8.06 -2.91 -0.02 2.96 15 29 H 0.12 3.34 8.06 -2.92 -0.02 3.31 15 Total: -1.00 -72.67 270.31 5.17 -67.50 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: 1.17 Total: 12.32 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: 4.41 Total: 0.13 kcal Atomic # 7 Polarization: -69.95 SS G_CDS: -2.95 Total: -72.91 kcal Atomic # 8 Polarization: -49.81 SS G_CDS: 0.51 Total: -49.30 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.25 kcal Total: -72.67 5.17 -67.50 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261130862.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.874 kcal (2) G-P(sol) polarization free energy of solvation -72.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds