Wall clock time and date at job start Mon Mar 30 2020 03:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31334 * 1 3 3 Si 1.86806 * 119.99492 * 2 1 4 4 H 1.48499 * 109.46774 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46751 * 300.00316 * 3 2 1 6 6 H 1.48497 * 109.46887 * 60.00385 * 3 2 1 7 7 C 1.38943 * 120.00447 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99804 * 179.97438 * 7 2 1 9 9 N 1.37168 * 119.99706 * 359.97438 * 7 2 1 10 10 N 1.40075 * 126.03142 * 0.02562 * 9 7 2 11 11 C 1.31896 * 108.27050 * 179.74120 * 10 9 7 12 12 C 1.48228 * 125.88704 * 180.02562 * 11 10 9 13 13 C 1.39503 * 120.10395 * 184.97382 * 12 11 10 14 14 C 1.37985 * 119.97469 * 179.97438 * 13 12 11 15 15 C 1.38285 * 120.19692 * 359.97438 * 14 13 12 16 16 C 1.38823 * 120.20339 * 359.97438 * 15 14 13 17 17 O 1.35904 * 119.98897 * 180.02562 * 16 15 14 18 18 C 1.38508 * 120.01980 * 359.78757 * 16 15 14 19 19 C 1.40991 * 108.22670 * 359.97438 * 11 10 9 20 20 C 1.35609 * 107.86918 * 359.97438 * 19 11 10 21 21 O 1.35683 * 126.15484 * 180.02562 * 20 19 11 22 22 H 0.97000 * 120.00437 * 359.97438 * 1 2 3 23 23 H 1.07988 * 120.00985 * 359.95131 * 13 12 11 24 24 H 1.08006 * 119.90184 * 180.02562 * 14 13 12 25 25 H 1.08002 * 119.89615 * 180.02562 * 15 14 13 26 26 H 0.96692 * 114.00240 * 89.99391 * 17 16 15 27 27 H 1.07997 * 120.09332 * 180.23451 * 18 16 15 28 28 H 1.07997 * 126.06719 * 180.02562 * 19 11 10 29 29 H 0.96698 * 114.00186 * 269.98091 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3133 0.0000 0.0000 3 14 2.2472 1.6179 0.0000 4 1 3.7072 1.3466 -0.0006 5 1 1.8883 2.3965 -1.2125 6 1 1.8884 2.3964 1.2125 7 6 2.0081 -1.2032 -0.0005 8 1 3.0881 -1.2031 -0.0010 9 7 1.3223 -2.3912 -0.0005 10 7 -0.0707 -2.5384 -0.0005 11 6 -0.3502 -3.8274 -0.0062 12 6 -1.7080 -4.4219 -0.0088 13 6 -1.8667 -5.8044 0.0898 14 6 -3.1319 -6.3550 0.0877 15 6 -4.2448 -5.5403 -0.0114 16 6 -4.0960 -4.1635 -0.1088 17 8 -5.1928 -3.3669 -0.2054 18 6 -2.8303 -3.6012 -0.1025 19 6 0.8650 -4.5422 -0.0106 20 6 1.8781 -3.6406 -0.0079 21 8 3.2044 -3.9269 -0.0112 22 1 -0.4851 0.8400 0.0004 23 1 -0.9996 -6.4434 0.1673 24 1 -3.2534 -7.4255 0.1645 25 1 -5.2329 -5.9764 -0.0121 26 1 -5.5403 -3.0709 0.6470 27 1 -2.7133 -2.5300 -0.1744 28 1 0.9705 -5.6170 -0.0160 29 1 3.5902 -4.0136 0.8713 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261181552.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:59 Heat of formation + Delta-G solvation = 17.465610 kcal Electronic energy + Delta-G solvation = -16828.311329 eV Core-core repulsion = 13911.722637 eV Total energy + Delta-G solvation = -2916.588692 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.079 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.85598 -38.95990 -36.41285 -35.86035 -33.76743 -31.48833 -29.77389 -29.03564 -27.61519 -25.16278 -22.64558 -22.05798 -20.07700 -19.60943 -18.22265 -17.54072 -16.41524 -15.87149 -15.28696 -14.89027 -14.73373 -14.46759 -13.65461 -13.29688 -13.08456 -12.90316 -12.54427 -12.02444 -11.89290 -11.62411 -11.28909 -11.10105 -10.98401 -10.72628 -10.28168 -10.02977 -9.77994 -8.86010 -8.83028 -8.26576 -7.59151 -7.29446 -6.71882 -4.39521 1.58466 1.78940 2.84079 2.99171 3.05467 3.30304 3.67871 3.71388 4.29438 4.48556 4.69648 4.85320 5.15298 5.32085 5.50072 5.71839 5.86747 6.01684 6.23152 6.29267 6.58966 6.75394 6.84026 6.89494 6.96035 7.11569 7.22608 7.33573 7.60674 7.96011 8.00778 8.18502 8.54629 9.23663 9.44952 10.23469 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.024704 B = 0.006961 C = 0.005448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.144759 B = 4021.532370 C = 5138.242337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.045 3.955 3 Si 0.937 3.063 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.312 4.312 8 H 0.121 0.879 9 N -0.144 5.144 10 N -0.231 5.231 11 C -0.004 4.004 12 C 0.052 3.948 13 C -0.127 4.127 14 C -0.106 4.106 15 C -0.168 4.168 16 C 0.099 3.901 17 O -0.502 6.502 18 C -0.131 4.131 19 C -0.275 4.275 20 C 0.125 3.875 21 O -0.467 6.467 22 H 0.277 0.723 23 H 0.124 0.876 24 H 0.121 0.879 25 H 0.119 0.881 26 H 0.384 0.616 27 H 0.138 0.862 28 H 0.126 0.874 29 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.548 -5.507 3.189 7.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.173 4.173 3 Si 0.761 3.239 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.447 4.447 8 H 0.139 0.861 9 N 0.079 4.921 10 N -0.068 5.068 11 C -0.153 4.153 12 C 0.050 3.950 13 C -0.147 4.147 14 C -0.125 4.125 15 C -0.187 4.187 16 C 0.055 3.945 17 O -0.312 6.312 18 C -0.150 4.150 19 C -0.308 4.308 20 C -0.043 4.043 21 O -0.268 6.268 22 H 0.088 0.912 23 H 0.142 0.858 24 H 0.139 0.861 25 H 0.137 0.863 26 H 0.239 0.761 27 H 0.156 0.844 28 H 0.144 0.856 29 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -4.090 -4.320 1.961 6.264 hybrid contribution 0.855 0.048 0.990 1.309 sum -3.234 -4.273 2.951 6.118 Atomic orbital electron populations 1.70210 1.06222 1.28332 1.34212 1.25693 0.95773 1.00483 0.95315 0.85710 0.79771 0.79806 0.78641 1.18519 1.19682 1.19737 1.20087 0.92183 0.80754 1.51625 0.86136 1.45535 1.04086 1.03988 1.38481 1.78629 0.88283 1.13321 1.26570 1.20162 0.91454 0.92641 1.11049 1.17811 0.89877 0.91909 0.95370 1.21128 0.97205 0.94147 1.02197 1.20787 0.91974 0.99139 1.00551 1.21245 0.99008 0.93015 1.05472 1.18376 0.85964 0.89027 1.01098 1.84808 1.43811 1.68251 1.34283 1.21635 0.90758 1.01569 1.01072 1.20357 0.90743 0.97768 1.21908 1.18563 0.83237 0.85356 1.17143 1.84860 1.19070 1.90832 1.32020 0.91202 0.85802 0.86116 0.86317 0.76067 0.84395 0.85613 0.78054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -20.52 11.81 55.49 0.66 -19.87 15 2 C 0.05 1.14 5.50 -17.50 -0.10 1.05 15 3 Si 0.94 18.61 29.55 -169.99 -5.02 13.58 15 4 H -0.26 -4.99 7.11 56.52 0.40 -4.59 15 5 H -0.27 -5.37 7.11 56.52 0.40 -4.97 15 6 H -0.27 -5.30 7.11 56.52 0.40 -4.90 15 7 C -0.31 -8.26 10.17 -14.90 -0.15 -8.42 15 8 H 0.12 2.95 7.83 -52.49 -0.41 2.54 15 9 N -0.14 -3.94 3.74 -11.72 -0.04 -3.99 15 10 N -0.23 -6.43 10.06 33.45 0.34 -6.10 15 11 C 0.00 -0.11 6.98 -82.69 -0.58 -0.68 15 12 C 0.05 1.11 5.88 -104.91 -0.62 0.49 15 13 C -0.13 -2.22 9.57 -39.20 -0.38 -2.59 15 14 C -0.11 -1.58 10.03 -39.66 -0.40 -1.98 15 15 C -0.17 -2.56 9.98 -39.35 -0.39 -2.95 15 16 C 0.10 1.73 6.70 -39.27 -0.26 1.46 15 17 O -0.50 -7.78 13.50 -19.44 -0.26 -8.05 15 18 C -0.13 -2.68 9.63 -39.07 -0.38 -3.06 15 19 C -0.28 -6.46 10.19 -39.48 -0.40 -6.86 15 20 C 0.12 3.10 7.94 -16.30 -0.13 2.97 15 21 O -0.47 -9.91 13.55 -18.75 -0.25 -10.17 15 22 H 0.28 6.78 8.31 -40.82 -0.34 6.44 15 23 H 0.12 1.96 7.04 -52.49 -0.37 1.59 15 24 H 0.12 1.39 8.06 -52.48 -0.42 0.96 15 25 H 0.12 1.50 8.06 -52.49 -0.42 1.07 15 26 H 0.38 3.99 9.06 45.56 0.41 4.40 15 27 H 0.14 3.12 7.85 -52.49 -0.41 2.71 15 28 H 0.13 2.54 7.34 -52.49 -0.39 2.16 15 29 H 0.37 5.83 9.06 45.56 0.41 6.24 15 LS Contribution 268.70 15.07 4.05 4.05 Total: -1.00 -32.39 268.70 -5.05 -37.44 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -0.73 Total: 13.66 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: -3.78 Total: -20.57 kcal Atomic # 7 Polarization: -30.90 SS G_CDS: 0.95 Total: -29.95 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.52 Total: -18.21 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.02 Total: 13.58 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -32.39 -5.05 -37.44 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261181552.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.904 kcal (2) G-P(sol) polarization free energy of solvation -32.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds